Wall clock time and date at job start Tue Mar 31 2020 11:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35423 * 117.00243 * 2 1 4 4 N 1.32240 * 119.80100 * 0.30927 * 3 2 1 5 5 C 1.31880 * 121.80126 * 180.31808 * 4 3 2 6 6 C 1.38351 * 121.18577 * 359.65548 * 5 4 3 7 7 C 1.38340 * 119.46101 * 0.02562 * 6 5 4 8 8 C 1.39994 * 118.34553 * 359.97438 * 7 6 5 9 9 C 1.47517 * 120.59610 * 180.02562 * 8 7 6 10 10 O 1.21592 * 120.00307 * 180.02562 * 9 8 7 11 11 N 1.34778 * 119.99958 * 0.02562 * 9 8 7 12 12 C 1.46499 * 119.99921 * 179.97438 * 11 9 8 13 13 H 1.09001 * 110.68413 * 37.01000 * 12 11 9 14 14 C 1.54850 * 110.62873 * 159.99823 * 12 11 9 15 15 C 1.55847 * 103.44660 * 118.48627 * 14 12 11 16 16 H 1.09001 * 115.55794 * 158.81469 * 15 14 12 17 17 C 1.55842 * 105.06702 * 288.18113 * 15 14 12 18 18 C 1.55867 * 103.53327 * 72.42567 * 17 15 14 19 19 C 1.55848 * 110.62795 * 274.02519 * 12 11 9 20 20 H 1.08999 * 115.56400 * 82.69735 * 19 12 11 21 21 N 1.50241 * 101.04854 * 32.94457 * 15 14 12 22 22 C 1.36931 * 130.84272 * 126.01479 * 21 15 14 23 23 H 1.08003 * 120.00334 * 180.02562 * 22 21 15 24 24 C 1.38817 * 119.99756 * 0.02562 * 22 21 15 25 25 N 1.31617 * 119.99987 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99748 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47278 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47136 * 120.00344 * 26 24 22 29 29 H 1.48503 * 109.46855 * 240.00342 * 26 24 22 30 30 H 1.09001 * 109.46814 * 300.00309 * 1 2 3 31 31 H 1.08998 * 109.47151 * 60.00027 * 1 2 3 32 32 H 1.08995 * 109.47213 * 180.02562 * 1 2 3 33 33 H 1.08001 * 119.40780 * 179.68096 * 5 4 3 34 34 H 1.08004 * 120.27296 * 180.02562 * 6 5 4 35 35 H 1.07998 * 120.82999 * 179.97438 * 7 6 5 36 36 H 0.96993 * 119.99991 * 0.02562 * 11 9 8 37 37 H 1.09001 * 110.62667 * 0.02562 * 14 12 11 38 38 H 1.08996 * 110.63188 * 236.97735 * 14 12 11 39 39 H 1.09003 * 110.62706 * 190.31386 * 17 15 14 40 40 H 1.09004 * 110.62337 * 313.16999 * 17 15 14 41 41 H 1.09004 * 110.10177 * 241.14317 * 18 17 15 42 42 H 1.08992 * 111.60510 * 117.80573 * 18 17 15 43 43 H 0.97002 * 119.99939 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2066 0.0000 4 7 1.3198 2.3132 0.0062 5 6 1.8772 3.5084 0.0002 6 6 3.2526 3.6574 -0.0058 7 6 4.0588 2.5332 -0.0060 8 6 3.4450 1.2751 0.0004 9 6 4.2569 0.0435 0.0010 10 8 3.7125 -1.0437 0.0062 11 7 5.6023 0.1233 -0.0041 12 6 6.4087 -1.0998 -0.0029 13 1 5.9385 -1.8715 -0.6125 14 6 7.8441 -0.8074 -0.5048 15 6 8.7379 -1.1803 0.7162 16 1 9.7815 -1.3956 0.4867 17 6 8.4836 -0.0544 1.7633 18 6 7.0449 -0.3562 2.2813 19 6 6.6307 -1.6097 1.4529 20 1 5.8183 -2.2032 1.8724 21 7 7.9514 -2.3123 1.3138 22 6 8.3234 -3.5908 1.6331 23 1 7.6031 -4.2718 2.0618 24 6 9.6266 -4.0117 1.4056 25 7 10.5045 -3.1817 0.8835 26 14 10.1340 -5.7561 1.8404 27 1 8.9703 -6.4832 2.4082 28 1 10.6045 -6.4543 0.6172 29 1 11.2305 -5.7177 2.8412 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.2486 4.3866 0.0004 34 1 3.6934 4.6434 -0.0102 35 1 5.1350 2.6239 -0.0110 36 1 6.0367 0.9905 -0.0078 37 1 7.9562 0.2478 -0.7542 38 1 8.0859 -1.4340 -1.3632 39 1 9.1987 -0.1237 2.5831 40 1 8.5358 0.9271 1.2920 41 1 6.3845 0.4832 2.0636 42 1 7.0415 -0.5824 3.3475 43 1 11.4152 -3.4757 0.7249 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095959536.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:26 Heat of formation + Delta-G solvation = 0.157008 kcal Electronic energy + Delta-G solvation = -26992.909622 eV Core-core repulsion = 23232.456367 eV Total energy + Delta-G solvation = -3760.453255 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.99015 -41.12222 -39.45847 -38.87321 -35.50552 -34.36827 -33.46303 -31.83331 -30.96296 -30.68028 -29.21610 -28.14264 -26.30444 -25.39250 -23.92373 -22.89073 -22.10560 -21.21418 -20.23371 -19.50424 -19.00060 -18.36739 -18.04248 -17.12280 -16.88719 -16.67374 -16.39954 -15.93224 -15.82695 -15.51481 -15.28369 -15.06723 -14.31510 -14.21511 -14.03441 -13.83511 -13.53032 -13.43066 -13.21654 -12.87390 -12.80072 -12.70374 -12.57073 -12.35789 -12.19046 -11.98553 -11.89468 -11.55442 -11.24094 -11.08897 -11.01944 -10.99651 -10.78849 -10.57592 -10.01149 -9.51354 -8.85127 -7.79896 -5.18765 -0.30114 0.27601 1.45718 1.46486 1.56214 1.92526 2.09051 2.15852 2.50088 2.84697 3.29216 3.33947 3.52549 3.74202 3.82682 3.97315 4.02866 4.11448 4.16216 4.29147 4.38742 4.39477 4.40010 4.47728 4.55983 4.62249 4.70221 4.72308 4.81170 4.93646 4.98669 5.06821 5.12189 5.15837 5.23440 5.33026 5.45427 5.47588 5.55858 5.76108 5.89694 6.23886 6.28655 6.61397 6.79163 7.06379 7.32928 7.68967 8.55264 9.27123 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024026 B = 0.003312 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.109248 B = 8451.476154 C = 9220.137893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.306 6.306 3 C 0.344 3.656 4 N -0.561 5.561 5 C 0.161 3.839 6 C -0.203 4.203 7 C -0.003 4.003 8 C -0.232 4.232 9 C 0.556 3.444 10 O -0.570 6.570 11 N -0.692 5.692 12 C 0.149 3.851 13 H 0.049 0.951 14 C -0.125 4.125 15 C 0.138 3.862 16 H 0.123 0.877 17 C -0.123 4.123 18 C -0.115 4.115 19 C 0.117 3.883 20 H 0.058 0.942 21 N -0.619 5.619 22 C -0.225 4.225 23 H 0.068 0.932 24 C -0.062 4.062 25 N -0.942 5.942 26 Si 0.975 3.025 27 H -0.276 1.276 28 H -0.291 1.291 29 H -0.290 1.290 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.107 0.893 33 H 0.202 0.798 34 H 0.188 0.812 35 H 0.175 0.825 36 H 0.412 0.588 37 H 0.101 0.899 38 H 0.046 0.954 39 H 0.034 0.966 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.041 0.959 43 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.512 20.725 -3.092 25.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.211 6.211 3 C 0.165 3.835 4 N -0.286 5.286 5 C 0.005 3.995 6 C -0.222 4.222 7 C -0.029 4.029 8 C -0.238 4.238 9 C 0.344 3.656 10 O -0.450 6.450 11 N -0.345 5.345 12 C 0.042 3.958 13 H 0.068 0.932 14 C -0.164 4.164 15 C 0.032 3.968 16 H 0.140 0.860 17 C -0.162 4.162 18 C -0.154 4.154 19 C 0.009 3.991 20 H 0.076 0.924 21 N -0.341 5.341 22 C -0.354 4.354 23 H 0.086 0.914 24 C -0.254 4.254 25 N -0.592 5.592 26 Si 0.804 3.196 27 H -0.201 1.201 28 H -0.218 1.218 29 H -0.217 1.217 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.126 0.874 33 H 0.219 0.781 34 H 0.205 0.795 35 H 0.192 0.808 36 H 0.251 0.749 37 H 0.119 0.881 38 H 0.065 0.935 39 H 0.053 0.947 40 H 0.112 0.888 41 H 0.103 0.897 42 H 0.060 0.940 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -15.505 19.298 -3.055 24.943 hybrid contribution 1.045 -1.214 0.290 1.628 sum -14.460 18.084 -2.765 23.319 Atomic orbital electron populations 1.23081 0.76211 1.04194 1.02617 1.86512 1.24000 1.24598 1.86002 1.20140 0.88739 0.85401 0.89189 1.67530 1.40670 0.99191 1.21174 1.23463 0.94556 0.93599 0.87918 1.22407 0.94079 1.01080 1.04680 1.22079 1.02459 0.89286 0.89057 1.20047 0.91293 0.95360 1.17115 1.18286 0.82513 0.88662 0.76156 1.90809 1.72556 1.30654 1.50936 1.45771 1.04857 1.09635 1.74281 1.22056 0.90962 0.85761 0.96996 0.93241 1.23138 0.93064 1.01507 0.98735 1.23720 0.97980 0.84707 0.90398 0.86003 1.23117 0.95324 0.98963 0.98802 1.22950 0.97152 0.97350 0.97989 1.23307 0.88158 0.92741 0.94857 0.92350 1.46761 1.06578 1.08879 1.71928 1.19316 0.94884 0.87588 1.33590 0.91433 1.25380 0.95939 1.01677 1.02440 1.69657 1.03679 1.34953 1.50895 0.85055 0.77630 0.79889 0.77030 1.20124 1.21819 1.21651 0.91808 0.91696 0.87426 0.78127 0.79514 0.80804 0.74902 0.88060 0.93468 0.94657 0.88824 0.89691 0.93996 0.94081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.38 113.37 1.18 1.91 16 2 O -0.31 -9.64 8.58 -66.37 -0.57 -10.21 16 3 C 0.34 9.46 7.51 85.13 0.64 10.10 16 4 N -0.56 -11.92 9.21 -308.00 -2.84 -14.75 16 5 C 0.16 1.99 11.17 84.71 0.95 2.93 16 6 C -0.20 -1.90 10.09 22.32 0.23 -1.67 16 7 C 0.00 -0.05 9.64 22.72 0.22 0.17 16 8 C -0.23 -5.89 5.90 -19.91 -0.12 -6.01 16 9 C 0.56 18.29 7.77 86.69 0.67 18.96 16 10 O -0.57 -24.71 14.92 16.81 0.25 -24.46 16 11 N -0.69 -19.68 3.62 -438.08 -1.58 -21.27 16 12 C 0.15 5.66 3.08 46.61 0.14 5.80 16 13 H 0.05 2.22 7.70 -2.39 -0.02 2.20 16 14 C -0.12 -4.55 6.20 32.21 0.20 -4.35 16 15 C 0.14 6.14 4.72 46.23 0.22 6.36 16 16 H 0.12 6.34 5.52 -2.39 -0.01 6.33 16 17 C -0.12 -4.40 6.46 32.57 0.21 -4.19 16 18 C -0.12 -4.10 6.42 32.57 0.21 -3.89 16 19 C 0.12 5.11 5.30 46.23 0.24 5.36 16 20 H 0.06 2.79 8.14 -2.39 -0.02 2.77 16 21 N -0.62 -32.01 2.98 -615.21 -1.83 -33.84 16 22 C -0.22 -13.00 10.59 84.04 0.89 -12.11 16 23 H 0.07 3.92 7.83 -2.91 -0.02 3.89 16 24 C -0.06 -3.51 5.50 84.86 0.47 -3.04 16 25 N -0.94 -54.83 10.47 21.65 0.23 -54.60 16 26 Si 0.97 46.81 29.55 68.60 2.03 48.83 16 27 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 28 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 29 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 30 H 0.06 1.25 8.10 -2.39 -0.02 1.24 16 31 H 0.06 1.25 8.11 -2.39 -0.02 1.24 16 32 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.20 0.79 8.06 -2.91 -0.02 0.77 16 34 H 0.19 0.17 8.06 -2.91 -0.02 0.15 16 35 H 0.17 1.35 6.51 -2.91 -0.02 1.33 16 36 H 0.41 8.06 6.15 -92.71 -0.57 7.49 16 37 H 0.10 2.70 7.34 -2.39 -0.02 2.68 16 38 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.09 2.46 7.82 -2.39 -0.02 2.45 16 41 H 0.08 2.40 6.55 -2.38 -0.02 2.38 16 42 H 0.04 1.57 8.14 -2.39 -0.02 1.56 16 43 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 Total: -1.00 -79.92 348.13 2.50 -77.42 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: 0.47 Total: 16.55 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: 6.34 Total: 16.33 kcal Atomic # 7 Polarization: -118.43 SS G_CDS: -6.03 Total: -124.46 kcal Atomic # 8 Polarization: -34.36 SS G_CDS: -0.32 Total: -34.68 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.83 kcal Total: -79.92 2.50 -77.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095959536.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.580 kcal (2) G-P(sol) polarization free energy of solvation -79.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds