Wall clock time and date at job start Tue Mar 31 2020 11:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35697 * 119.44202 * 2 1 4 4 C 1.35270 * 120.99966 * 180.02562 * 3 2 1 5 5 C 1.41139 * 119.87024 * 359.97438 * 4 3 2 6 6 C 1.48466 * 120.53885 * 179.97438 * 5 4 3 7 7 O 1.21473 * 119.99760 * 179.97438 * 6 5 4 8 8 N 1.34771 * 119.99958 * 359.97438 * 6 5 4 9 9 C 1.46494 * 119.99887 * 180.02562 * 8 6 5 10 10 H 1.08998 * 110.69144 * 32.01164 * 9 8 6 11 11 C 1.54855 * 110.62847 * 269.02452 * 9 8 6 12 12 C 1.56304 * 103.40860 * 241.38947 * 11 9 8 13 13 H 1.08991 * 115.71916 * 158.93443 * 12 11 9 14 14 C 1.55847 * 105.07834 * 288.42552 * 12 11 9 15 15 C 1.54218 * 103.56830 * 71.68773 * 14 12 11 16 16 C 1.55843 * 103.56317 * 0.02562 * 15 14 12 17 17 H 1.09003 * 116.13060 * 159.06782 * 16 15 14 18 18 N 1.50236 * 101.05340 * 32.84706 * 16 15 14 19 19 C 1.36941 * 130.83651 * 125.99271 * 18 16 15 20 20 H 1.07997 * 119.99783 * 342.74631 * 19 18 16 21 21 C 1.38806 * 119.99862 * 162.74191 * 19 18 16 22 22 N 1.31626 * 120.00127 * 337.98637 * 21 19 18 23 23 Si 1.86801 * 120.00093 * 157.97919 * 21 19 18 24 24 H 1.48501 * 109.47198 * 180.02562 * 23 21 19 25 25 H 1.48501 * 109.46714 * 60.00384 * 23 21 19 26 26 H 1.48494 * 109.47197 * 300.00670 * 23 21 19 27 27 C 1.38299 * 118.92484 * 0.24969 * 5 4 3 28 28 C 1.34602 * 119.44203 * 180.02562 * 2 1 3 29 29 O 1.22012 * 119.96010 * 0.02562 * 28 2 1 30 30 H 1.09001 * 109.47170 * 89.99846 * 1 2 3 31 31 H 1.08998 * 109.46818 * 210.00031 * 1 2 3 32 32 H 1.08999 * 109.46790 * 329.99493 * 1 2 3 33 33 H 1.08005 * 119.49929 * 0.02562 * 3 2 1 34 34 H 1.08005 * 120.06044 * 179.97438 * 4 3 2 35 35 H 0.97008 * 119.99797 * 359.97438 * 8 6 5 36 36 H 1.08999 * 110.62274 * 359.97438 * 11 9 8 37 37 H 1.08997 * 110.63159 * 123.01755 * 11 9 8 38 38 H 1.09004 * 110.62907 * 190.09447 * 14 12 11 39 39 H 1.09006 * 110.62362 * 312.95036 * 14 12 11 40 40 H 1.09002 * 110.64963 * 241.43899 * 15 14 12 41 41 H 1.08996 * 110.49962 * 118.49541 * 15 14 12 42 42 H 0.97000 * 119.99592 * 353.96341 * 22 21 19 43 43 H 1.08004 * 120.49391 * 179.73259 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1320 1.1817 0.0000 4 6 3.4842 1.2185 -0.0005 5 6 4.2202 0.0142 -0.0005 6 6 5.7046 0.0372 -0.0017 7 8 6.3282 -1.0053 -0.0012 8 7 6.3603 1.2147 -0.0032 9 6 7.8251 1.2374 -0.0049 10 1 8.2229 0.3784 -0.5453 11 6 8.3718 1.2715 1.4435 12 6 9.1602 2.6199 1.5016 13 1 9.3287 3.0267 2.4987 14 6 10.4323 2.3836 0.6329 15 6 9.8846 2.3479 -0.8083 16 6 8.3530 2.5679 -0.6229 17 1 7.8104 2.9283 -1.4969 18 7 8.3350 3.4707 0.5779 19 6 7.7513 4.6946 0.7693 20 1 7.4373 5.2819 -0.0808 21 6 7.5631 5.1800 2.0560 22 7 7.5267 4.3475 3.0749 23 14 7.3617 7.0150 2.3418 24 1 7.1770 7.2728 3.7926 25 1 6.1742 7.5046 1.5965 26 1 8.5742 7.7265 1.8636 27 6 3.5361 -1.1878 -0.0053 28 6 2.1267 -1.1722 -0.0005 29 8 1.5056 -2.2224 -0.0015 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5139 33 1 1.5748 2.1069 0.0004 34 1 3.9996 2.1676 -0.0009 35 1 5.8623 2.0471 -0.0040 36 1 7.5531 1.2720 2.1630 37 1 9.0407 0.4295 1.6215 38 1 11.1375 3.2061 0.7529 39 1 10.9030 1.4350 0.8914 40 1 10.0807 1.3802 -1.2702 41 1 10.3186 3.1526 -1.4017 42 1 7.5433 3.3901 2.9196 43 1 4.0738 -2.1244 -0.0097 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097356736.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:36 Heat of formation + Delta-G solvation = 13.613426 kcal Electronic energy + Delta-G solvation = -26895.134518 eV Core-core repulsion = 23135.264777 eV Total energy + Delta-G solvation = -3759.869741 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.48275 -39.97098 -38.62736 -36.99791 -34.60489 -33.99389 -32.82561 -30.06045 -29.29690 -29.10850 -28.44842 -27.44962 -24.52649 -23.95236 -23.48637 -21.58196 -20.11249 -19.97810 -18.93059 -18.03787 -17.68438 -17.53162 -16.94188 -16.25867 -15.83155 -15.74060 -14.85246 -14.57090 -14.30331 -14.24213 -13.79901 -13.76777 -13.45623 -13.37823 -13.16644 -12.83509 -12.47866 -12.00930 -11.96835 -11.80925 -11.62765 -11.44926 -10.84536 -10.74235 -10.68353 -10.49536 -10.40634 -10.17884 -10.15264 -9.93583 -9.85272 -9.47913 -9.40045 -8.80323 -8.55430 -8.15502 -7.10940 -6.19563 -3.26334 0.35849 1.53834 2.41674 2.91150 3.32453 3.39911 3.46067 3.62877 3.68958 4.33158 4.41989 4.43262 4.67867 4.87854 4.88814 4.94388 5.01356 5.14161 5.23764 5.30725 5.41915 5.47303 5.62861 5.67708 5.78428 5.84721 5.91755 5.93725 6.04094 6.07710 6.15980 6.22860 6.27352 6.40752 6.48716 6.58546 6.73636 6.82015 6.82920 7.00836 7.15530 7.45985 7.78475 7.82346 8.27307 8.40060 8.84789 9.65985 10.35290 11.16761 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013841 B = 0.004026 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.463020 B = 6953.187322 C = 8450.099679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.497 5.497 3 C 0.129 3.871 4 C -0.208 4.208 5 C -0.026 4.026 6 C 0.547 3.453 7 O -0.537 6.537 8 N -0.692 5.692 9 C 0.126 3.874 10 H 0.084 0.916 11 C -0.140 4.140 12 C 0.140 3.860 13 H 0.109 0.891 14 C -0.134 4.134 15 C -0.125 4.125 16 C 0.127 3.873 17 H 0.091 0.909 18 N -0.594 5.594 19 C -0.322 4.322 20 H 0.065 0.935 21 C -0.025 4.025 22 N -0.922 5.922 23 Si 1.067 2.933 24 H -0.285 1.285 25 H -0.294 1.294 26 H -0.294 1.294 27 C -0.177 4.177 28 C 0.512 3.488 29 O -0.549 6.549 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.169 0.831 34 H 0.153 0.847 35 H 0.406 0.594 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.060 0.940 42 H 0.271 0.729 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.543 -3.457 -7.090 11.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.209 5.209 3 C 0.002 3.998 4 C -0.231 4.231 5 C -0.033 4.033 6 C 0.333 3.667 7 O -0.415 6.415 8 N -0.342 5.342 9 C 0.020 3.980 10 H 0.102 0.898 11 C -0.181 4.181 12 C 0.033 3.967 13 H 0.127 0.873 14 C -0.173 4.173 15 C -0.165 4.165 16 C 0.019 3.981 17 H 0.109 0.891 18 N -0.317 5.317 19 C -0.450 4.450 20 H 0.083 0.917 21 C -0.227 4.227 22 N -0.563 5.563 23 Si 0.897 3.103 24 H -0.211 1.211 25 H -0.221 1.221 26 H -0.222 1.222 27 C -0.200 4.200 28 C 0.314 3.686 29 O -0.432 6.432 30 H 0.095 0.905 31 H 0.112 0.888 32 H 0.105 0.895 33 H 0.186 0.814 34 H 0.170 0.830 35 H 0.242 0.758 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -8.791 -3.453 -5.883 11.128 hybrid contribution -0.057 -0.558 -1.171 1.298 sum -8.848 -4.011 -7.054 12.006 Atomic orbital electron populations 1.22182 0.77095 1.05102 1.03928 1.45376 1.09423 1.06821 1.59253 1.21841 0.93561 0.89336 0.95033 1.20795 0.92642 0.98894 1.10737 1.20617 0.94137 0.93822 0.94687 1.18300 0.86523 0.84419 0.77484 1.90742 1.68414 1.32278 1.50116 1.45933 1.08219 1.07882 1.72148 1.22680 0.77975 0.99620 0.97755 0.89777 1.23510 1.00120 0.98603 0.95842 1.23145 0.88997 0.88925 0.95629 0.87339 1.22839 0.98611 0.99831 0.96065 1.22750 0.96747 0.99928 0.97068 1.23216 0.94286 0.88565 0.92058 0.89087 1.46564 1.57472 1.17965 1.09674 1.19706 1.38809 0.91935 0.94501 0.91691 1.25714 0.99042 1.06301 0.91604 1.70778 1.48292 1.04608 1.32652 0.83487 0.75992 0.74904 0.75954 1.21093 1.22126 1.22177 1.22690 0.92081 0.99705 1.05534 1.17082 0.88911 0.82849 0.79755 1.90948 1.69406 1.29755 1.53101 0.90521 0.88753 0.89482 0.81405 0.82984 0.75788 0.91686 0.92209 0.92473 0.92714 0.92564 0.92115 0.91674 0.82066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.41 10.34 59.85 0.62 1.03 16 2 N -0.50 -5.24 2.98 -127.13 -0.38 -5.62 16 3 C 0.13 1.14 10.25 -16.90 -0.17 0.97 16 4 C -0.21 -2.34 9.50 -39.54 -0.38 -2.72 16 5 C -0.03 -0.37 5.91 -104.56 -0.62 -0.99 16 6 C 0.55 9.27 7.80 -12.05 -0.09 9.18 16 7 O -0.54 -10.65 16.04 5.39 0.09 -10.57 16 8 N -0.69 -11.56 5.03 -52.11 -0.26 -11.82 16 9 C 0.13 2.24 2.80 -65.40 -0.18 2.06 16 10 H 0.08 1.49 7.23 -51.93 -0.38 1.12 16 11 C -0.14 -2.72 6.11 -23.98 -0.15 -2.86 16 12 C 0.14 2.96 3.84 -62.53 -0.24 2.72 16 13 H 0.11 2.61 6.54 -51.93 -0.34 2.27 16 14 C -0.13 -2.40 6.41 -24.57 -0.16 -2.56 16 15 C -0.13 -2.08 6.41 -24.58 -0.16 -2.24 16 16 C 0.13 2.33 5.06 -62.77 -0.32 2.01 16 17 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 18 N -0.59 -13.27 2.83 -145.48 -0.41 -13.68 16 19 C -0.32 -8.11 10.42 -15.06 -0.16 -8.26 16 20 H 0.07 1.62 7.92 -52.49 -0.42 1.21 16 21 C -0.03 -0.66 5.34 -17.43 -0.09 -0.75 16 22 N -0.92 -25.73 12.67 55.49 0.70 -25.03 16 23 Si 1.07 23.59 29.97 -169.99 -5.10 18.50 16 24 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 27 C -0.18 -2.62 9.61 -38.53 -0.37 -2.99 16 28 C 0.51 7.38 7.42 -15.31 -0.11 7.26 16 29 O -0.55 -9.46 16.62 4.91 0.08 -9.38 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.78 7.37 -51.93 -0.38 0.40 16 32 H 0.09 0.35 8.00 -51.93 -0.42 -0.07 16 33 H 0.17 0.81 8.02 -52.48 -0.42 0.39 16 34 H 0.15 1.59 6.50 -52.48 -0.34 1.25 16 35 H 0.41 6.54 6.76 -40.82 -0.28 6.26 16 36 H 0.06 1.39 7.57 -51.93 -0.39 1.00 16 37 H 0.06 1.07 7.83 -51.93 -0.41 0.66 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.05 0.87 7.83 -51.93 -0.41 0.46 16 40 H 0.06 0.82 7.82 -51.93 -0.41 0.42 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.27 7.51 5.67 -40.82 -0.23 7.27 16 43 H 0.16 2.50 7.69 -52.48 -0.40 2.10 16 LS Contribution 350.01 15.07 5.27 5.27 Total: -1.00 -32.92 350.01 -8.28 -41.20 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -5.70 Total: 9.26 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -2.58 Total: 1.86 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: -0.35 Total: -56.15 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: 0.17 Total: -19.95 kcal Atomic # 14 Polarization: 23.59 SS G_CDS: -5.10 Total: 18.50 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.92 -8.28 -41.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097356736.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.816 kcal (2) G-P(sol) polarization free energy of solvation -32.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds