Wall clock time and date at job start Tue Mar 31 2020 11:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35697 * 119.44202 * 2 1 4 4 C 1.35270 * 120.99966 * 180.02562 * 3 2 1 5 5 C 1.41139 * 119.87024 * 359.97438 * 4 3 2 6 6 C 1.48466 * 120.53885 * 179.97438 * 5 4 3 7 7 O 1.21473 * 119.99760 * 179.97438 * 6 5 4 8 8 N 1.34771 * 119.99958 * 359.97438 * 6 5 4 9 9 C 1.46494 * 119.99887 * 180.02562 * 8 6 5 10 10 H 1.08998 * 110.69144 * 32.01164 * 9 8 6 11 11 C 1.54855 * 110.62847 * 269.02452 * 9 8 6 12 12 C 1.56304 * 103.40860 * 241.38947 * 11 9 8 13 13 H 1.08991 * 115.71916 * 158.93443 * 12 11 9 14 14 C 1.55847 * 105.07834 * 288.42552 * 12 11 9 15 15 C 1.54218 * 103.56830 * 71.68773 * 14 12 11 16 16 C 1.55843 * 103.56317 * 0.02562 * 15 14 12 17 17 H 1.09003 * 116.13060 * 159.06782 * 16 15 14 18 18 N 1.50236 * 101.05340 * 32.84706 * 16 15 14 19 19 C 1.36941 * 130.83651 * 125.99271 * 18 16 15 20 20 H 1.07997 * 119.99783 * 342.74631 * 19 18 16 21 21 C 1.38806 * 119.99862 * 162.74191 * 19 18 16 22 22 N 1.31626 * 120.00127 * 337.98637 * 21 19 18 23 23 Si 1.86801 * 120.00093 * 157.97919 * 21 19 18 24 24 H 1.48501 * 109.47198 * 180.02562 * 23 21 19 25 25 H 1.48501 * 109.46714 * 60.00384 * 23 21 19 26 26 H 1.48494 * 109.47197 * 300.00670 * 23 21 19 27 27 C 1.38299 * 118.92484 * 0.24969 * 5 4 3 28 28 C 1.34602 * 119.44203 * 180.02562 * 2 1 3 29 29 O 1.22012 * 119.96010 * 0.02562 * 28 2 1 30 30 H 1.09001 * 109.47170 * 89.99846 * 1 2 3 31 31 H 1.08998 * 109.46818 * 210.00031 * 1 2 3 32 32 H 1.08999 * 109.46790 * 329.99493 * 1 2 3 33 33 H 1.08005 * 119.49929 * 0.02562 * 3 2 1 34 34 H 1.08005 * 120.06044 * 179.97438 * 4 3 2 35 35 H 0.97008 * 119.99797 * 359.97438 * 8 6 5 36 36 H 1.08999 * 110.62274 * 359.97438 * 11 9 8 37 37 H 1.08997 * 110.63159 * 123.01755 * 11 9 8 38 38 H 1.09004 * 110.62907 * 190.09447 * 14 12 11 39 39 H 1.09006 * 110.62362 * 312.95036 * 14 12 11 40 40 H 1.09002 * 110.64963 * 241.43899 * 15 14 12 41 41 H 1.08996 * 110.49962 * 118.49541 * 15 14 12 42 42 H 0.97000 * 119.99592 * 353.96341 * 22 21 19 43 43 H 1.08004 * 120.49391 * 179.73259 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1320 1.1817 0.0000 4 6 3.4842 1.2185 -0.0005 5 6 4.2202 0.0142 -0.0005 6 6 5.7046 0.0372 -0.0017 7 8 6.3282 -1.0053 -0.0012 8 7 6.3603 1.2147 -0.0032 9 6 7.8251 1.2374 -0.0049 10 1 8.2229 0.3784 -0.5453 11 6 8.3718 1.2715 1.4435 12 6 9.1602 2.6199 1.5016 13 1 9.3287 3.0267 2.4987 14 6 10.4323 2.3836 0.6329 15 6 9.8846 2.3479 -0.8083 16 6 8.3530 2.5679 -0.6229 17 1 7.8104 2.9283 -1.4969 18 7 8.3350 3.4707 0.5779 19 6 7.7513 4.6946 0.7693 20 1 7.4373 5.2819 -0.0808 21 6 7.5631 5.1800 2.0560 22 7 7.5267 4.3475 3.0749 23 14 7.3617 7.0150 2.3418 24 1 7.1770 7.2728 3.7926 25 1 6.1742 7.5046 1.5965 26 1 8.5742 7.7265 1.8636 27 6 3.5361 -1.1878 -0.0053 28 6 2.1267 -1.1722 -0.0005 29 8 1.5056 -2.2224 -0.0015 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5139 33 1 1.5748 2.1069 0.0004 34 1 3.9996 2.1676 -0.0009 35 1 5.8623 2.0471 -0.0040 36 1 7.5531 1.2720 2.1630 37 1 9.0407 0.4295 1.6215 38 1 11.1375 3.2061 0.7529 39 1 10.9030 1.4350 0.8914 40 1 10.0807 1.3802 -1.2702 41 1 10.3186 3.1526 -1.4017 42 1 7.5433 3.3901 2.9196 43 1 4.0738 -2.1244 -0.0097 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097356736.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:30 Heat of formation + Delta-G solvation = -7.745090 kcal Electronic energy + Delta-G solvation = -26896.060693 eV Core-core repulsion = 23135.264777 eV Total energy + Delta-G solvation = -3760.795916 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 5.31 seconds Orbital eigenvalues (eV) -42.49551 -41.42631 -40.07419 -38.08232 -35.69203 -35.42540 -34.60442 -31.04244 -30.87771 -30.65413 -29.81268 -28.51497 -25.97425 -25.38707 -24.48814 -22.94136 -21.64019 -21.45142 -20.43768 -19.46528 -19.15387 -18.57443 -17.96358 -17.21766 -17.17021 -16.87819 -16.50492 -15.94150 -15.69970 -15.51731 -15.34440 -15.24454 -14.86523 -14.28262 -14.17905 -14.04975 -13.51167 -13.46938 -13.28624 -13.00399 -12.93293 -12.76005 -12.54859 -12.37061 -12.16455 -11.95881 -11.90338 -11.68800 -11.52841 -11.32230 -11.20898 -11.17020 -10.84036 -10.57935 -10.08426 -9.13680 -8.95042 -8.19563 -5.21456 -0.70902 0.56880 1.56685 1.63804 1.66611 1.71588 1.88741 2.00652 2.57928 2.67819 3.23118 3.39079 3.44370 3.61099 3.65458 3.85923 3.94813 4.02100 4.09377 4.14065 4.29106 4.36557 4.39221 4.44556 4.49203 4.53559 4.66070 4.69485 4.79001 4.80697 4.87733 4.91829 5.05699 5.06260 5.08067 5.27868 5.33771 5.37838 5.48122 5.59074 5.70202 5.87269 6.34830 6.44836 6.76536 6.90108 7.03706 7.74644 8.51252 9.18606 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013841 B = 0.004026 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.463020 B = 6953.187322 C = 8450.099679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.488 5.488 3 C 0.165 3.835 4 C -0.228 4.228 5 C -0.019 4.019 6 C 0.546 3.454 7 O -0.571 6.571 8 N -0.687 5.687 9 C 0.134 3.866 10 H 0.092 0.908 11 C -0.132 4.132 12 C 0.131 3.869 13 H 0.071 0.929 14 C -0.127 4.127 15 C -0.116 4.116 16 C 0.129 3.871 17 H 0.104 0.896 18 N -0.614 5.614 19 C -0.315 4.315 20 H 0.067 0.933 21 C -0.077 4.077 22 N -0.958 5.958 23 Si 1.112 2.888 24 H -0.301 1.301 25 H -0.271 1.271 26 H -0.289 1.289 27 C -0.208 4.208 28 C 0.505 3.495 29 O -0.591 6.591 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.130 0.870 33 H 0.227 0.773 34 H 0.164 0.836 35 H 0.410 0.590 36 H 0.035 0.965 37 H 0.073 0.927 38 H 0.049 0.951 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.066 0.934 42 H 0.260 0.740 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.762 -1.608 -8.816 13.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.197 5.197 3 C 0.038 3.962 4 C -0.250 4.250 5 C -0.027 4.027 6 C 0.333 3.667 7 O -0.451 6.451 8 N -0.336 5.336 9 C 0.027 3.973 10 H 0.110 0.890 11 C -0.172 4.172 12 C 0.024 3.976 13 H 0.089 0.911 14 C -0.166 4.166 15 C -0.156 4.156 16 C 0.022 3.978 17 H 0.122 0.878 18 N -0.337 5.337 19 C -0.444 4.444 20 H 0.085 0.915 21 C -0.272 4.272 22 N -0.602 5.602 23 Si 0.939 3.061 24 H -0.228 1.228 25 H -0.196 1.196 26 H -0.216 1.216 27 C -0.232 4.232 28 C 0.308 3.692 29 O -0.478 6.478 30 H 0.112 0.888 31 H 0.096 0.904 32 H 0.148 0.852 33 H 0.243 0.757 34 H 0.181 0.819 35 H 0.247 0.753 36 H 0.054 0.946 37 H 0.091 0.909 38 H 0.068 0.932 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.085 0.915 42 H 0.071 0.929 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -10.023 -1.587 -7.654 12.710 hybrid contribution 0.302 -1.094 -0.656 1.311 sum -9.721 -2.681 -8.309 13.066 Atomic orbital electron populations 1.22545 0.74407 1.06455 1.05539 1.45546 1.11174 1.06229 1.56703 1.22659 0.93009 0.90282 0.90294 1.20942 0.93815 0.97874 1.12353 1.20507 0.92540 0.94989 0.94622 1.18712 0.87735 0.83802 0.76473 1.90716 1.69462 1.33356 1.51610 1.45873 1.07888 1.08053 1.71828 1.22579 0.78617 0.99670 0.96426 0.89012 1.23398 0.99300 0.98229 0.96314 1.23081 0.90947 0.89153 0.94400 0.91132 1.22776 0.96864 1.00730 0.96203 1.22715 0.94878 1.01773 0.96227 1.23410 0.95797 0.87560 0.91000 0.87808 1.46728 1.57774 1.18026 1.11216 1.19943 1.37189 0.92927 0.94318 0.91508 1.26817 0.99586 1.08978 0.91867 1.70863 1.51531 1.04239 1.33545 0.82852 0.76909 0.71316 0.75042 1.22789 1.19622 1.21640 1.22481 0.92809 0.99247 1.08652 1.16979 0.88613 0.83619 0.79974 1.90915 1.69945 1.31349 1.55562 0.88770 0.90403 0.85182 0.75654 0.81891 0.75318 0.94563 0.90868 0.93224 0.90439 0.89715 0.91525 0.92856 0.84230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.53 10.34 127.77 1.32 1.85 16 2 N -0.49 -9.00 2.98 -674.31 -2.01 -11.01 16 3 C 0.17 2.25 10.25 83.41 0.86 3.10 16 4 C -0.23 -4.61 9.50 22.30 0.21 -4.40 16 5 C -0.02 -0.55 5.91 -19.82 -0.12 -0.67 16 6 C 0.55 18.67 7.80 86.97 0.68 19.35 16 7 O -0.57 -23.21 16.04 -3.63 -0.06 -23.27 16 8 N -0.69 -22.59 5.03 -437.09 -2.20 -24.79 16 9 C 0.13 4.62 2.80 46.63 0.13 4.75 16 10 H 0.09 3.09 7.23 -2.39 -0.02 3.08 16 11 C -0.13 -5.14 6.11 32.38 0.20 -4.94 16 12 C 0.13 5.57 3.84 46.39 0.18 5.75 16 13 H 0.07 3.55 6.54 -2.39 -0.02 3.53 16 14 C -0.13 -4.33 6.41 31.99 0.21 -4.13 16 15 C -0.12 -3.55 6.41 31.99 0.21 -3.34 16 16 C 0.13 4.49 5.06 46.25 0.23 4.72 16 17 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 18 N -0.61 -27.07 2.83 -614.20 -1.74 -28.81 16 19 C -0.32 -15.68 10.42 84.03 0.88 -14.80 16 20 H 0.07 3.24 7.92 -2.91 -0.02 3.21 16 21 C -0.08 -4.01 5.34 84.86 0.45 -3.56 16 22 N -0.96 -54.76 12.67 21.65 0.27 -54.48 16 23 Si 1.11 47.39 29.97 68.60 2.06 49.45 16 24 H -0.30 -13.52 7.11 99.48 0.71 -12.81 16 25 H -0.27 -10.37 7.11 99.48 0.71 -9.67 16 26 H -0.29 -11.95 7.11 99.48 0.71 -11.24 16 27 C -0.21 -6.44 9.61 22.95 0.22 -6.22 16 28 C 0.51 14.59 7.42 84.93 0.63 15.22 16 29 O -0.59 -21.04 16.62 -5.36 -0.09 -21.13 16 30 H 0.09 0.74 8.14 -2.39 -0.02 0.73 16 31 H 0.08 1.16 7.37 -2.39 -0.02 1.15 16 32 H 0.13 0.31 8.00 -2.39 -0.02 0.29 16 33 H 0.23 0.55 8.02 -2.91 -0.02 0.53 16 34 H 0.16 2.98 6.50 -2.91 -0.02 2.96 16 35 H 0.41 12.82 6.76 -92.70 -0.63 12.19 16 36 H 0.04 1.60 7.57 -2.39 -0.02 1.58 16 37 H 0.07 2.60 7.83 -2.39 -0.02 2.58 16 38 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.08 2.29 7.83 -2.38 -0.02 2.27 16 40 H 0.08 2.14 7.82 -2.39 -0.02 2.13 16 41 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.26 14.97 5.67 -92.71 -0.53 14.44 16 43 H 0.14 4.78 7.69 -2.91 -0.02 4.75 16 Total: -1.00 -75.82 350.01 3.18 -72.64 By element: Atomic # 1 Polarization: 28.06 SS G_CDS: 0.66 Total: 28.71 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: 6.28 Total: 12.69 kcal Atomic # 7 Polarization: -113.42 SS G_CDS: -5.67 Total: -119.10 kcal Atomic # 8 Polarization: -44.25 SS G_CDS: -0.15 Total: -44.40 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.06 Total: 49.45 kcal Total: -75.82 3.18 -72.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097356736.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.897 kcal (2) G-P(sol) polarization free energy of solvation -75.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.31 seconds