Wall clock time and date at job start Tue Mar 31 2020 11:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35494 * 117.00114 * 2 1 4 4 C 1.39177 * 119.52478 * 179.97438 * 3 2 1 5 5 C 1.37954 * 119.26135 * 179.97438 * 4 3 2 6 6 C 1.40277 * 118.35971 * 359.97438 * 5 4 3 7 7 C 1.47614 * 120.49875 * 179.97438 * 6 5 4 8 8 O 1.21575 * 120.00357 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99911 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99772 * 179.97438 * 9 7 6 11 11 H 1.09003 * 110.56154 * 36.44956 * 10 9 7 12 12 C 1.54853 * 110.62775 * 273.54469 * 10 9 7 13 13 C 1.55844 * 103.44651 * 241.50846 * 12 10 9 14 14 H 1.09007 * 115.55911 * 158.81164 * 13 12 10 15 15 C 1.55840 * 105.06644 * 287.42432 * 13 12 10 16 16 C 1.56681 * 102.59883 * 72.30594 * 15 13 12 17 17 C 1.55848 * 110.62501 * 159.52406 * 10 9 7 18 18 H 1.09006 * 115.56107 * 319.67485 * 17 10 9 19 19 N 1.50235 * 101.05063 * 32.94323 * 13 12 10 20 20 C 1.36938 * 130.84049 * 126.04679 * 19 13 12 21 21 H 1.08001 * 120.00087 * 351.59563 * 20 19 13 22 22 C 1.38815 * 119.99917 * 171.59028 * 20 19 13 23 23 N 1.31620 * 119.99715 * 157.92761 * 22 20 19 24 24 Si 1.86797 * 119.99962 * 337.92748 * 22 20 19 25 25 H 1.48497 * 109.47309 * 93.14895 * 24 22 20 26 26 H 1.48503 * 109.47128 * 213.14770 * 24 22 20 27 27 H 1.48503 * 109.47357 * 333.14565 * 24 22 20 28 28 C 1.39523 * 119.00506 * 0.02562 * 6 5 4 29 29 N 1.31674 * 120.62539 * 359.73423 * 28 6 5 30 30 H 1.08996 * 109.47234 * 300.00089 * 1 2 3 31 31 H 1.09003 * 109.47383 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46868 * 60.00386 * 1 2 3 33 33 H 1.07999 * 120.36307 * 359.95325 * 4 3 2 34 34 H 1.08001 * 120.81639 * 179.97438 * 5 4 3 35 35 H 0.97003 * 120.00471 * 0.02562 * 9 7 6 36 36 H 1.08999 * 110.62880 * 0.02562 * 12 10 9 37 37 H 1.09004 * 110.62456 * 123.02217 * 12 10 9 38 38 H 1.09007 * 110.62678 * 190.31167 * 15 13 12 39 39 H 1.08997 * 110.63144 * 313.33654 * 15 13 12 40 40 H 1.09004 * 110.35654 * 241.21680 * 16 15 13 41 41 H 1.09001 * 110.89064 * 118.36163 * 16 15 13 42 42 H 0.96996 * 119.99548 * 179.97438 * 23 22 20 43 43 H 1.07994 * 119.68798 * 180.02562 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 3.4346 1.2685 0.0005 5 6 4.0553 2.5006 0.0000 6 6 3.2526 3.6510 -0.0016 7 6 3.8671 4.9932 -0.0017 8 8 5.0774 5.1077 -0.0008 9 7 3.0863 6.0918 -0.0028 10 6 3.6961 7.4238 -0.0023 11 1 4.6026 7.4300 -0.6076 12 6 4.0031 7.8827 1.4445 13 6 3.1335 9.1654 1.6099 14 1 2.9108 9.4533 2.6375 15 6 3.8443 10.2508 0.7466 16 6 3.5263 9.7866 -0.7157 17 6 2.6828 8.4917 -0.5138 18 1 2.0632 8.1862 -1.3570 19 7 1.9476 8.8218 0.7541 20 6 0.6087 8.8126 1.0411 21 1 0.2734 8.9528 2.0581 22 6 -0.3177 8.6231 0.0248 23 7 -1.5259 8.1851 0.3090 24 14 0.1504 8.9898 -1.7460 25 1 0.6449 7.7488 -2.3944 26 1 -1.0399 9.4909 -2.4791 27 1 1.2183 10.0214 -1.7723 28 6 1.8648 3.5077 -0.0021 29 7 1.3140 2.3117 -0.0063 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8901 33 1 4.0210 0.3616 0.0017 34 1 5.1325 2.5774 0.0008 35 1 2.1206 6.0005 -0.0031 36 1 3.7019 7.1191 2.1616 37 1 5.0613 8.1192 1.5559 38 1 3.4165 11.2349 0.9384 39 1 4.9171 10.2531 0.9395 40 1 4.4489 9.5641 -1.2520 41 1 2.9479 10.5428 -1.2465 42 1 -2.1734 8.0531 -0.4011 43 1 1.2363 4.3859 -0.0038 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097484650.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:36 Heat of formation + Delta-G solvation = 24.451766 kcal Electronic energy + Delta-G solvation = -26960.836613 eV Core-core repulsion = 23201.436857 eV Total energy + Delta-G solvation = -3759.399755 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.91227 -39.95770 -38.75891 -37.57896 -34.01538 -32.65550 -32.61822 -31.15545 -29.68875 -29.25318 -28.34769 -27.30899 -24.34984 -24.01988 -23.37019 -21.73388 -20.33176 -20.20198 -19.01054 -18.62110 -17.66155 -17.28066 -17.11248 -16.20428 -16.08242 -15.28405 -14.92700 -14.67127 -14.40577 -14.28231 -13.85688 -13.67362 -13.48998 -13.28757 -13.09768 -12.90077 -12.61255 -12.31937 -12.02904 -11.62117 -11.48604 -11.30736 -11.17690 -11.08018 -10.91619 -10.40453 -10.35076 -10.14507 -10.09285 -9.85957 -9.69323 -9.43301 -9.34654 -8.97402 -8.78603 -8.53130 -7.33422 -6.00580 -3.26171 0.67337 1.08195 2.87338 2.97914 3.20278 3.38948 3.41462 3.45209 3.82368 4.10592 4.43718 4.58277 4.71901 4.79480 4.90822 4.99815 5.08683 5.16933 5.18153 5.25753 5.34637 5.46485 5.48927 5.57285 5.64533 5.69299 5.76822 5.86488 5.87809 6.00098 6.01974 6.16401 6.18261 6.19777 6.38969 6.45498 6.61745 6.70306 6.81941 6.96727 6.98946 7.28809 7.63106 7.85527 8.22872 8.45917 8.63972 9.55946 10.16150 11.15429 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014010 B = 0.004415 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.053524 B = 6340.387132 C = 7673.247476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.306 6.306 3 C 0.337 3.663 4 C -0.201 4.201 5 C 0.015 3.985 6 C -0.223 4.223 7 C 0.565 3.435 8 O -0.550 6.550 9 N -0.703 5.703 10 C 0.133 3.867 11 H 0.086 0.914 12 C -0.136 4.136 13 C 0.140 3.860 14 H 0.095 0.905 15 C -0.133 4.133 16 C -0.133 4.133 17 C 0.114 3.886 18 H 0.095 0.905 19 N -0.605 5.605 20 C -0.224 4.224 21 H 0.099 0.901 22 C 0.016 3.984 23 N -0.910 5.910 24 Si 0.864 3.136 25 H -0.290 1.290 26 H -0.303 1.303 27 H -0.260 1.260 28 C 0.184 3.816 29 N -0.540 5.540 30 H 0.063 0.937 31 H 0.096 0.904 32 H 0.062 0.938 33 H 0.147 0.853 34 H 0.154 0.846 35 H 0.406 0.594 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.069 0.931 42 H 0.263 0.737 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.133 -10.440 -1.021 13.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.213 6.213 3 C 0.158 3.842 4 C -0.221 4.221 5 C -0.011 4.011 6 C -0.229 4.229 7 C 0.352 3.648 8 O -0.429 6.429 9 N -0.352 5.352 10 C 0.026 3.974 11 H 0.104 0.896 12 C -0.176 4.176 13 C 0.033 3.967 14 H 0.113 0.887 15 C -0.173 4.173 16 C -0.173 4.173 17 C 0.007 3.993 18 H 0.113 0.887 19 N -0.327 5.327 20 C -0.351 4.351 21 H 0.116 0.884 22 C -0.181 4.181 23 N -0.554 5.554 24 Si 0.696 3.304 25 H -0.219 1.219 26 H -0.232 1.232 27 H -0.185 1.185 28 C 0.026 3.974 29 N -0.263 5.263 30 H 0.081 0.919 31 H 0.115 0.885 32 H 0.081 0.919 33 H 0.165 0.835 34 H 0.171 0.829 35 H 0.242 0.758 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 8.765 -10.730 -1.019 13.892 hybrid contribution 0.082 0.370 -1.128 1.190 sum 8.848 -10.360 -2.147 13.792 Atomic orbital electron populations 1.22932 0.76754 1.03029 1.03067 1.86190 1.23366 1.24571 1.87141 1.20128 0.89505 0.84850 0.89721 1.21009 0.91780 0.99507 1.09847 1.21494 1.01165 0.89668 0.88734 1.20909 0.95000 0.95117 1.11864 1.17852 0.86625 0.83765 0.76584 1.90729 1.13718 1.87116 1.51378 1.45975 1.10645 1.05556 1.73064 1.22551 0.96357 0.80996 0.97453 0.89608 1.23362 0.98963 0.99153 0.96168 1.22946 0.86563 0.92237 0.94972 0.88681 1.23301 0.98860 0.99448 0.95660 1.23348 0.98790 0.98157 0.96993 1.23378 0.91589 0.92972 0.91361 0.88737 1.46910 1.01447 1.77298 1.07092 1.18668 0.77598 1.43587 0.95203 0.88366 1.24707 0.95352 1.00980 0.97100 1.69823 1.05713 1.47342 1.32533 0.87225 0.77058 0.79080 0.86997 1.21900 1.23191 1.18520 1.22831 0.91832 0.94113 0.88577 1.67368 1.40448 0.98591 1.19884 0.91859 0.88540 0.91938 0.83536 0.82873 0.75758 0.91605 0.91672 0.92111 0.92101 0.92274 0.91259 0.92742 0.81441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.37 101.05 1.05 1.41 16 2 O -0.31 -3.67 10.46 -18.18 -0.19 -3.86 16 3 C 0.34 4.47 7.49 -16.96 -0.13 4.34 16 4 C -0.20 -2.32 10.02 -39.34 -0.39 -2.72 16 5 C 0.02 0.19 9.70 -38.92 -0.38 -0.19 16 6 C -0.22 -3.28 5.89 -104.83 -0.62 -3.90 16 7 C 0.57 9.52 7.77 -12.43 -0.10 9.42 16 8 O -0.55 -10.35 16.13 5.30 0.09 -10.26 16 9 N -0.70 -12.22 5.05 -52.41 -0.26 -12.48 16 10 C 0.13 2.35 2.73 -65.43 -0.18 2.17 16 11 H 0.09 1.48 7.36 -51.93 -0.38 1.10 16 12 C -0.14 -2.29 6.22 -24.24 -0.15 -2.44 16 13 C 0.14 2.51 5.43 -62.81 -0.34 2.17 16 14 H 0.10 1.64 8.14 -51.92 -0.42 1.21 16 15 C -0.13 -2.13 6.58 -23.23 -0.15 -2.28 16 16 C -0.13 -2.30 6.26 -23.22 -0.15 -2.45 16 17 C 0.11 2.25 3.14 -62.80 -0.20 2.05 16 18 H 0.10 2.03 3.47 -51.93 -0.18 1.85 16 19 N -0.60 -13.16 2.85 -145.81 -0.42 -13.57 16 20 C -0.22 -5.83 10.94 -15.06 -0.16 -5.99 16 21 H 0.10 2.75 8.06 -52.49 -0.42 2.32 16 22 C 0.02 0.44 5.49 -17.43 -0.10 0.35 16 23 N -0.91 -26.48 13.97 55.49 0.78 -25.70 16 24 Si 0.86 20.79 24.62 -169.99 -4.19 16.60 16 25 H -0.29 -6.79 6.76 56.52 0.38 -6.41 16 26 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 27 H -0.26 -5.94 4.83 56.52 0.27 -5.67 16 28 C 0.18 2.72 10.71 -17.14 -0.18 2.54 16 29 N -0.54 -7.93 9.18 -12.96 -0.12 -8.05 16 30 H 0.06 0.64 8.10 -51.93 -0.42 0.21 16 31 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 33 H 0.15 1.30 8.06 -52.49 -0.42 0.87 16 34 H 0.15 1.73 7.73 -52.49 -0.41 1.32 16 35 H 0.41 7.24 6.67 -40.82 -0.27 6.97 16 36 H 0.07 1.17 7.98 -51.93 -0.41 0.75 16 37 H 0.06 0.98 7.80 -51.93 -0.40 0.58 16 38 H 0.06 0.98 8.14 -51.92 -0.42 0.55 16 39 H 0.06 0.82 7.80 -51.93 -0.41 0.42 16 40 H 0.06 0.88 7.82 -51.93 -0.41 0.47 16 41 H 0.07 1.28 6.58 -51.93 -0.34 0.94 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.17 2.46 6.41 -52.49 -0.34 2.13 16 LS Contribution 344.39 15.07 5.19 5.19 Total: -1.00 -30.78 344.39 -7.09 -37.86 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -5.79 Total: 9.81 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: -2.17 Total: 4.47 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: -0.02 Total: -59.81 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.10 Total: -14.13 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.19 Total: 16.60 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.78 -7.09 -37.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097484650.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.316 kcal (2) G-P(sol) polarization free energy of solvation -30.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds