Wall clock time and date at job start Tue Mar 31 2020 11:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35494 * 117.00114 * 2 1 4 4 C 1.39177 * 119.52478 * 179.97438 * 3 2 1 5 5 C 1.37954 * 119.26135 * 179.97438 * 4 3 2 6 6 C 1.40277 * 118.35971 * 359.97438 * 5 4 3 7 7 C 1.47614 * 120.49875 * 179.97438 * 6 5 4 8 8 O 1.21575 * 120.00357 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99911 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99772 * 179.97438 * 9 7 6 11 11 H 1.09003 * 110.56154 * 36.44956 * 10 9 7 12 12 C 1.54853 * 110.62775 * 273.54469 * 10 9 7 13 13 C 1.55844 * 103.44651 * 241.50846 * 12 10 9 14 14 H 1.09007 * 115.55911 * 158.81164 * 13 12 10 15 15 C 1.55840 * 105.06644 * 287.42432 * 13 12 10 16 16 C 1.56681 * 102.59883 * 72.30594 * 15 13 12 17 17 C 1.55848 * 110.62501 * 159.52406 * 10 9 7 18 18 H 1.09006 * 115.56107 * 319.67485 * 17 10 9 19 19 N 1.50235 * 101.05063 * 32.94323 * 13 12 10 20 20 C 1.36938 * 130.84049 * 126.04679 * 19 13 12 21 21 H 1.08001 * 120.00087 * 351.59563 * 20 19 13 22 22 C 1.38815 * 119.99917 * 171.59028 * 20 19 13 23 23 N 1.31620 * 119.99715 * 157.92761 * 22 20 19 24 24 Si 1.86797 * 119.99962 * 337.92748 * 22 20 19 25 25 H 1.48497 * 109.47309 * 93.14895 * 24 22 20 26 26 H 1.48503 * 109.47128 * 213.14770 * 24 22 20 27 27 H 1.48503 * 109.47357 * 333.14565 * 24 22 20 28 28 C 1.39523 * 119.00506 * 0.02562 * 6 5 4 29 29 N 1.31674 * 120.62539 * 359.73423 * 28 6 5 30 30 H 1.08996 * 109.47234 * 300.00089 * 1 2 3 31 31 H 1.09003 * 109.47383 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46868 * 60.00386 * 1 2 3 33 33 H 1.07999 * 120.36307 * 359.95325 * 4 3 2 34 34 H 1.08001 * 120.81639 * 179.97438 * 5 4 3 35 35 H 0.97003 * 120.00471 * 0.02562 * 9 7 6 36 36 H 1.08999 * 110.62880 * 0.02562 * 12 10 9 37 37 H 1.09004 * 110.62456 * 123.02217 * 12 10 9 38 38 H 1.09007 * 110.62678 * 190.31167 * 15 13 12 39 39 H 1.08997 * 110.63144 * 313.33654 * 15 13 12 40 40 H 1.09004 * 110.35654 * 241.21680 * 16 15 13 41 41 H 1.09001 * 110.89064 * 118.36163 * 16 15 13 42 42 H 0.96996 * 119.99548 * 179.97438 * 23 22 20 43 43 H 1.07994 * 119.68798 * 180.02562 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 3.4346 1.2685 0.0005 5 6 4.0553 2.5006 0.0000 6 6 3.2526 3.6510 -0.0016 7 6 3.8671 4.9932 -0.0017 8 8 5.0774 5.1077 -0.0008 9 7 3.0863 6.0918 -0.0028 10 6 3.6961 7.4238 -0.0023 11 1 4.6026 7.4300 -0.6076 12 6 4.0031 7.8827 1.4445 13 6 3.1335 9.1654 1.6099 14 1 2.9108 9.4533 2.6375 15 6 3.8443 10.2508 0.7466 16 6 3.5263 9.7866 -0.7157 17 6 2.6828 8.4917 -0.5138 18 1 2.0632 8.1862 -1.3570 19 7 1.9476 8.8218 0.7541 20 6 0.6087 8.8126 1.0411 21 1 0.2734 8.9528 2.0581 22 6 -0.3177 8.6231 0.0248 23 7 -1.5259 8.1851 0.3090 24 14 0.1504 8.9898 -1.7460 25 1 0.6449 7.7488 -2.3944 26 1 -1.0399 9.4909 -2.4791 27 1 1.2183 10.0214 -1.7723 28 6 1.8648 3.5077 -0.0021 29 7 1.3140 2.3117 -0.0063 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8901 33 1 4.0210 0.3616 0.0017 34 1 5.1325 2.5774 0.0008 35 1 2.1206 6.0005 -0.0031 36 1 3.7019 7.1191 2.1616 37 1 5.0613 8.1192 1.5559 38 1 3.4165 11.2349 0.9384 39 1 4.9171 10.2531 0.9395 40 1 4.4489 9.5641 -1.2520 41 1 2.9479 10.5428 -1.2465 42 1 -2.1734 8.0531 -0.4011 43 1 1.2363 4.3859 -0.0038 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097484650.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:35 Heat of formation + Delta-G solvation = 2.032116 kcal Electronic energy + Delta-G solvation = -26961.808802 eV Core-core repulsion = 23201.436857 eV Total energy + Delta-G solvation = -3760.371944 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.02151 -41.30372 -40.03332 -38.66460 -35.41606 -34.59341 -33.67831 -32.27000 -31.46745 -30.66235 -29.62833 -28.25029 -25.94554 -25.38380 -24.41855 -22.99459 -21.97374 -21.49517 -20.45923 -19.63687 -19.04099 -18.80535 -18.40366 -17.55194 -17.15348 -16.81458 -16.15957 -15.90245 -15.67509 -15.42869 -15.31532 -15.16783 -14.91394 -14.53493 -14.34760 -14.16522 -13.91038 -13.82597 -13.26223 -12.97096 -12.83961 -12.81502 -12.80579 -12.37604 -12.25123 -11.95908 -11.84878 -11.55264 -11.36266 -11.20497 -11.12521 -10.98261 -10.88798 -10.68732 -10.11532 -9.67961 -9.19990 -8.09863 -5.29792 -0.42776 0.06803 1.26380 1.41953 1.48382 1.75375 1.95853 2.14963 2.43851 2.69734 2.95521 3.05959 3.19744 3.59273 3.72983 3.76697 3.82989 3.91491 4.01618 4.07843 4.26692 4.32052 4.38810 4.41129 4.48163 4.53872 4.55259 4.62931 4.65478 4.73027 4.76128 4.81439 4.98823 5.09383 5.13273 5.20374 5.24652 5.34916 5.42095 5.58168 5.63672 6.01732 6.15337 6.46784 6.57937 6.65045 7.10800 7.52225 8.25457 9.09907 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014010 B = 0.004415 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.053524 B = 6340.387132 C = 7673.247476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.307 6.307 3 C 0.328 3.672 4 C -0.186 4.186 5 C 0.019 3.981 6 C -0.235 4.235 7 C 0.570 3.430 8 O -0.569 6.569 9 N -0.709 5.709 10 C 0.137 3.863 11 H 0.099 0.901 12 C -0.125 4.125 13 C 0.133 3.867 14 H 0.097 0.903 15 C -0.121 4.121 16 C -0.131 4.131 17 C 0.104 3.896 18 H 0.076 0.924 19 N -0.625 5.625 20 C -0.201 4.201 21 H 0.066 0.934 22 C -0.039 4.039 23 N -0.959 5.959 24 Si 0.921 3.079 25 H -0.284 1.284 26 H -0.323 1.323 27 H -0.239 1.239 28 C 0.176 3.824 29 N -0.558 5.558 30 H 0.054 0.946 31 H 0.130 0.870 32 H 0.055 0.945 33 H 0.181 0.819 34 H 0.170 0.830 35 H 0.401 0.599 36 H 0.051 0.949 37 H 0.093 0.907 38 H 0.058 0.942 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.056 0.944 42 H 0.257 0.743 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.268 -11.221 -1.569 16.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.213 6.213 3 C 0.149 3.851 4 C -0.206 4.206 5 C -0.006 4.006 6 C -0.240 4.240 7 C 0.358 3.642 8 O -0.450 6.450 9 N -0.358 5.358 10 C 0.031 3.969 11 H 0.117 0.883 12 C -0.165 4.165 13 C 0.027 3.973 14 H 0.115 0.885 15 C -0.160 4.160 16 C -0.171 4.171 17 C -0.002 4.002 18 H 0.093 0.907 19 N -0.349 5.349 20 C -0.329 4.329 21 H 0.084 0.916 22 C -0.233 4.233 23 N -0.608 5.608 24 Si 0.753 3.247 25 H -0.213 1.213 26 H -0.253 1.253 27 H -0.163 1.163 28 C 0.018 3.982 29 N -0.282 5.282 30 H 0.073 0.927 31 H 0.148 0.852 32 H 0.074 0.926 33 H 0.198 0.802 34 H 0.188 0.812 35 H 0.237 0.763 36 H 0.070 0.930 37 H 0.112 0.888 38 H 0.077 0.923 39 H 0.116 0.884 40 H 0.109 0.891 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 11.974 -11.502 -1.565 16.677 hybrid contribution -0.875 0.509 -0.846 1.319 sum 11.100 -10.993 -2.411 15.807 Atomic orbital electron populations 1.23132 0.75619 1.05050 1.02326 1.86202 1.24485 1.23768 1.86826 1.20486 0.90399 0.84821 0.89416 1.21336 0.91201 1.00356 1.07731 1.21709 1.01801 0.89194 0.87896 1.20806 0.95015 0.94831 1.13395 1.18047 0.86284 0.84194 0.75711 1.90706 1.14326 1.87463 1.52475 1.46057 1.10474 1.05950 1.73279 1.22537 0.95929 0.80499 0.97985 0.88334 1.23291 1.00209 0.97915 0.95130 1.23211 0.85253 0.93744 0.95082 0.88535 1.23253 1.00724 0.98168 0.93858 1.23350 0.99450 0.96128 0.98129 1.23527 0.91792 0.95071 0.89851 0.90653 1.46961 1.00781 1.77921 1.09196 1.18524 0.79925 1.40741 0.93698 0.91591 1.25208 0.95421 1.02144 1.00501 1.69955 1.07152 1.50338 1.33328 0.86310 0.76312 0.79484 0.82590 1.21263 1.25315 1.16330 1.22680 0.91983 0.94075 0.89433 1.67320 1.41286 0.98966 1.20668 0.92678 0.85169 0.92614 0.80191 0.81212 0.76330 0.93025 0.88835 0.92291 0.88449 0.89058 0.92492 0.93360 0.82519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.37 113.37 1.18 1.78 16 2 O -0.31 -6.82 10.46 -87.95 -0.92 -7.74 16 3 C 0.33 8.25 7.49 84.83 0.64 8.89 16 4 C -0.19 -3.83 10.02 22.43 0.22 -3.61 16 5 C 0.02 0.45 9.70 22.70 0.22 0.67 16 6 C -0.23 -6.73 5.89 -20.00 -0.12 -6.85 16 7 C 0.57 18.61 7.77 86.72 0.67 19.28 16 8 O -0.57 -20.30 16.13 -3.95 -0.06 -20.36 16 9 N -0.71 -24.24 5.05 -437.99 -2.21 -26.45 16 10 C 0.14 4.54 2.73 46.61 0.13 4.67 16 11 H 0.10 3.07 7.36 -2.39 -0.02 3.05 16 12 C -0.13 -3.89 6.22 32.21 0.20 -3.69 16 13 C 0.13 4.49 5.43 46.23 0.25 4.74 16 14 H 0.10 3.20 8.14 -2.38 -0.02 3.18 16 15 C -0.12 -3.41 6.58 32.86 0.22 -3.19 16 16 C -0.13 -4.09 6.26 32.87 0.21 -3.88 16 17 C 0.10 3.91 3.14 46.23 0.15 4.06 16 18 H 0.08 3.15 3.47 -2.38 -0.01 3.14 16 19 N -0.63 -26.88 2.85 -615.23 -1.76 -28.64 16 20 C -0.20 -10.71 10.94 84.03 0.92 -9.79 16 21 H 0.07 3.87 8.06 -2.91 -0.02 3.84 16 22 C -0.04 -2.19 5.49 84.86 0.47 -1.73 16 23 N -0.96 -58.45 13.97 21.65 0.30 -58.15 16 24 Si 0.92 44.09 24.62 68.60 1.69 45.78 16 25 H -0.28 -13.12 6.76 99.48 0.67 -12.44 16 26 H -0.32 -16.36 7.11 99.48 0.71 -15.66 16 27 H -0.24 -10.48 4.83 99.48 0.48 -10.00 16 28 C 0.18 5.28 10.71 85.03 0.91 6.19 16 29 N -0.56 -16.42 9.18 -307.82 -2.82 -19.24 16 30 H 0.05 1.08 8.10 -2.39 -0.02 1.07 16 31 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.06 1.08 8.10 -2.39 -0.02 1.06 16 33 H 0.18 2.46 8.06 -2.91 -0.02 2.44 16 34 H 0.17 3.35 7.73 -2.91 -0.02 3.32 16 35 H 0.40 14.61 6.67 -92.71 -0.62 14.00 16 36 H 0.05 1.75 7.98 -2.39 -0.02 1.73 16 37 H 0.09 2.41 7.80 -2.38 -0.02 2.39 16 38 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 39 H 0.10 2.09 7.80 -2.39 -0.02 2.07 16 40 H 0.09 2.28 7.82 -2.38 -0.02 2.26 16 41 H 0.06 1.92 6.58 -2.39 -0.02 1.91 16 42 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 43 H 0.16 4.91 6.41 -2.91 -0.02 4.89 16 Total: -1.00 -68.16 344.39 0.64 -67.53 By element: Atomic # 1 Polarization: 29.58 SS G_CDS: 0.17 Total: 29.75 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: 6.25 Total: 17.53 kcal Atomic # 7 Polarization: -125.99 SS G_CDS: -6.49 Total: -132.48 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -0.98 Total: -28.11 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.69 Total: 45.78 kcal Total: -68.16 0.64 -67.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097484650.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.560 kcal (2) G-P(sol) polarization free energy of solvation -68.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds