Wall clock time and date at job start Tue Mar 31 2020 11:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35745 * 117.00205 * 2 1 4 4 C 1.39217 * 120.81065 * 0.02562 * 3 2 1 5 5 C 1.38322 * 119.28419 * 179.97438 * 4 3 2 6 6 N 1.31604 * 120.97221 * 359.97438 * 5 4 3 7 7 C 1.32795 * 121.78385 * 0.02562 * 6 5 4 8 8 C 1.48188 * 119.69993 * 180.02562 * 7 6 5 9 9 O 1.21517 * 119.99904 * 179.97438 * 8 7 6 10 10 N 1.34777 * 119.99835 * 359.97092 * 8 7 6 11 11 C 1.46502 * 119.99612 * 180.02562 * 10 8 7 12 12 H 1.08996 * 110.55944 * 36.45331 * 11 10 8 13 13 C 1.54848 * 110.62877 * 273.54845 * 11 10 8 14 14 C 1.55842 * 103.44781 * 241.51189 * 13 11 10 15 15 H 1.09003 * 115.55916 * 158.80994 * 14 13 11 16 16 C 1.55839 * 105.06605 * 287.42636 * 14 13 11 17 17 C 1.56682 * 102.60129 * 72.29937 * 16 14 13 18 18 C 1.55838 * 103.60036 * 359.66547 * 17 16 14 19 19 H 1.09007 * 116.13136 * 159.38142 * 18 17 16 20 20 N 1.50238 * 101.05286 * 33.16893 * 18 17 16 21 21 C 1.36933 * 130.84244 * 126.04982 * 20 18 17 22 22 H 1.08004 * 119.99921 * 0.02562 * 21 20 18 23 23 C 1.38810 * 120.00560 * 180.02562 * 21 20 18 24 24 N 1.31624 * 119.99657 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00401 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46769 * 60.00125 * 25 23 21 27 27 H 1.48494 * 109.47169 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.47361 * 300.00524 * 25 23 21 29 29 C 1.39105 * 120.60408 * 359.97438 * 7 6 5 30 30 H 1.08999 * 109.47466 * 300.00224 * 1 2 3 31 31 H 1.08997 * 109.46714 * 59.99932 * 1 2 3 32 32 H 1.08998 * 109.47227 * 180.02562 * 1 2 3 33 33 H 1.07997 * 120.35987 * 359.95282 * 4 3 2 34 34 H 1.07996 * 119.51000 * 179.97438 * 5 4 3 35 35 H 0.96997 * 119.99757 * 0.02562 * 10 8 7 36 36 H 1.09003 * 110.62813 * 0.02562 * 13 11 10 37 37 H 1.08998 * 110.62685 * 123.02108 * 13 11 10 38 38 H 1.09001 * 110.62865 * 190.31300 * 16 14 13 39 39 H 1.09003 * 110.62243 * 313.33136 * 16 14 13 40 40 H 1.09002 * 110.35753 * 241.22091 * 17 16 14 41 41 H 1.09001 * 110.88774 * 118.36949 * 17 16 14 42 42 H 0.96999 * 120.00066 * 179.97438 * 24 23 21 43 43 H 1.08000 * 120.51143 * 179.72334 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3037 2.3877 0.0005 5 6 1.9643 3.6030 0.0011 6 7 3.2792 3.6591 0.0016 7 6 4.0261 2.5611 0.0011 8 6 5.5034 2.6781 0.0023 9 8 6.1921 1.6770 0.0023 10 7 6.0830 3.8949 0.0032 11 6 7.5434 4.0104 0.0038 12 1 7.9900 3.2227 -0.6029 13 6 8.0938 3.9632 1.4504 14 6 8.7911 5.3468 1.6183 15 1 8.9341 5.6797 2.6463 16 6 10.0850 5.2558 0.7546 17 6 9.5246 5.3100 -0.7075 18 6 7.9831 5.4163 -0.5054 19 1 7.4144 5.8103 -1.3478 20 7 7.9135 6.2170 0.7639 21 6 7.2533 7.3812 1.0532 22 1 6.6599 7.8686 0.2937 23 6 7.3464 7.9351 2.3226 24 7 8.0699 7.3413 3.2481 25 14 6.4463 9.5236 2.7170 26 1 4.9878 9.3289 2.5168 27 1 6.7054 9.9018 4.1294 28 1 6.9295 10.6026 1.8185 29 6 3.4345 1.3021 0.0006 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 0.2243 2.3532 0.0002 34 1 1.3927 4.5192 0.0011 35 1 5.5331 4.6939 0.0035 36 1 7.2802 3.8533 2.1674 37 1 8.8155 3.1537 1.5604 38 1 10.7365 6.1081 0.9478 39 1 10.6092 4.3194 0.9459 40 1 9.7793 4.3968 -1.2454 41 1 9.9037 6.1843 -1.2368 42 1 8.1354 7.7285 4.1351 43 1 4.0435 0.4102 -0.0043 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097628222.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:13 Heat of formation + Delta-G solvation = 14.690927 kcal Electronic energy + Delta-G solvation = -26599.364347 eV Core-core repulsion = 22839.541330 eV Total energy + Delta-G solvation = -3759.823017 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.92634 -39.65633 -38.66614 -37.76581 -33.79857 -32.48420 -31.74313 -31.52426 -29.05444 -28.74240 -28.05462 -27.62533 -24.45578 -23.94547 -23.51438 -21.49476 -20.12216 -19.75593 -18.83416 -18.36404 -17.42396 -16.95233 -16.32152 -16.21743 -15.89010 -15.58888 -14.87509 -14.81182 -14.62521 -14.19800 -13.94790 -13.89826 -13.44852 -13.28291 -12.93425 -12.59109 -11.99925 -11.92880 -11.78465 -11.62324 -11.19016 -11.06942 -10.90390 -10.84280 -10.47727 -10.36447 -10.10740 -10.06404 -9.83920 -9.62956 -9.40406 -9.21848 -9.13225 -9.12186 -8.91529 -8.39729 -6.90422 -5.69445 -3.08434 0.56912 1.13342 2.70533 2.92125 3.40696 3.44851 3.45991 3.55337 3.90489 4.23960 4.37828 4.45348 4.60419 4.73036 4.74052 4.94376 5.06032 5.17341 5.20449 5.40164 5.46214 5.61616 5.67726 5.73185 5.79961 5.92044 6.08627 6.11898 6.18490 6.25104 6.34236 6.46541 6.53294 6.64982 6.77989 6.87106 6.87453 6.99057 7.14131 7.36948 7.51633 7.68446 7.83406 8.09132 8.21799 8.59980 9.12038 9.75367 10.56090 11.39533 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014667 B = 0.003724 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.539232 B = 7516.654881 C = 8885.000933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.309 6.309 3 C 0.160 3.840 4 C -0.249 4.249 5 C 0.138 3.862 6 N -0.476 5.476 7 C 0.124 3.876 8 C 0.563 3.437 9 O -0.543 6.543 10 N -0.679 5.679 11 C 0.126 3.874 12 H 0.080 0.920 13 C -0.143 4.143 14 C 0.153 3.847 15 H 0.152 0.848 16 C -0.139 4.139 17 C -0.127 4.127 18 C 0.126 3.874 19 H 0.089 0.911 20 N -0.589 5.589 21 C -0.212 4.212 22 H 0.078 0.922 23 C -0.010 4.010 24 N -0.921 5.921 25 Si 0.915 3.085 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.287 1.287 29 C -0.147 4.147 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.142 0.858 34 H 0.165 0.835 35 H 0.414 0.586 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.057 0.943 42 H 0.254 0.746 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.660 -11.016 -7.204 18.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.220 6.220 3 C 0.106 3.894 4 C -0.270 4.270 5 C -0.022 4.022 6 N -0.190 5.190 7 C -0.014 4.014 8 C 0.347 3.653 9 O -0.421 6.421 10 N -0.327 5.327 11 C 0.020 3.980 12 H 0.098 0.902 13 C -0.183 4.183 14 C 0.046 3.954 15 H 0.169 0.831 16 C -0.178 4.178 17 C -0.167 4.167 18 C 0.017 3.983 19 H 0.107 0.893 20 N -0.310 5.310 21 C -0.340 4.340 22 H 0.096 0.904 23 C -0.206 4.206 24 N -0.568 5.568 25 Si 0.746 3.254 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.213 1.213 29 C -0.169 4.169 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.122 0.878 33 H 0.160 0.840 34 H 0.182 0.818 35 H 0.251 0.749 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -11.725 -10.858 -6.989 17.442 hybrid contribution -1.606 0.458 0.237 1.687 sum -13.331 -10.400 -6.752 18.206 Atomic orbital electron populations 1.23152 0.77710 1.04432 1.01708 1.86089 1.21902 1.26091 1.87932 1.19193 0.92132 0.84745 0.93317 1.22389 1.01654 0.93252 1.09676 1.22624 0.89758 0.97169 0.92623 1.67690 1.07251 1.31247 1.12839 1.21174 0.94881 0.88439 0.96876 1.17767 0.85379 0.84383 0.77779 1.90752 1.63269 1.36697 1.51416 1.45896 1.08557 1.07767 1.70528 1.22752 0.78072 0.98974 0.98242 0.90248 1.23472 1.00053 0.99705 0.95058 1.23721 0.86688 0.86170 0.98782 0.83099 1.23366 0.99454 0.99396 0.95615 1.23161 0.96558 0.99673 0.97265 1.23159 0.94533 0.89473 0.91116 0.89286 1.46503 1.54707 1.23723 1.06018 1.18961 1.22086 0.96994 0.95962 0.90399 1.24689 1.00639 0.99262 0.95991 1.69457 1.43762 1.39919 1.03710 0.86138 0.79234 0.82925 0.77101 1.21244 1.21698 1.21331 1.21396 0.91857 0.99849 1.03804 0.92241 0.92278 0.87798 0.84040 0.81755 0.74917 0.92224 0.92710 0.92606 0.93099 0.93027 0.92378 0.93563 0.82771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.84 101.05 0.99 1.14 16 2 O -0.31 -3.22 10.51 -18.94 -0.20 -3.42 16 3 C 0.16 1.89 6.73 -38.85 -0.26 1.63 16 4 C -0.25 -2.46 9.12 -39.19 -0.36 -2.82 16 5 C 0.14 1.58 11.17 -17.62 -0.20 1.38 16 6 N -0.48 -7.18 9.54 -9.87 -0.09 -7.28 16 7 C 0.12 1.99 6.75 -83.04 -0.56 1.43 16 8 C 0.56 10.46 7.81 -12.17 -0.10 10.36 16 9 O -0.54 -11.15 16.04 5.35 0.09 -11.06 16 10 N -0.68 -12.81 5.09 -52.23 -0.27 -13.07 16 11 C 0.13 2.44 2.73 -65.43 -0.18 2.26 16 12 H 0.08 1.51 7.36 -51.93 -0.38 1.13 16 13 C -0.14 -3.01 6.22 -24.24 -0.15 -3.16 16 14 C 0.15 3.54 4.67 -62.80 -0.29 3.25 16 15 H 0.15 4.00 5.52 -51.93 -0.29 3.72 16 16 C -0.14 -2.77 6.58 -23.23 -0.15 -2.92 16 17 C -0.13 -2.32 6.49 -23.23 -0.15 -2.47 16 18 C 0.13 2.50 5.04 -62.80 -0.32 2.19 16 19 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 20 N -0.59 -14.18 2.99 -145.81 -0.44 -14.61 16 21 C -0.21 -5.63 10.59 -15.06 -0.16 -5.79 16 22 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16 23 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 24 N -0.92 -26.12 10.47 55.49 0.58 -25.53 16 25 Si 0.92 21.69 29.55 -169.99 -5.02 16.67 16 26 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 29 C -0.15 -2.10 9.60 -38.89 -0.37 -2.47 16 30 H 0.06 0.28 7.71 -51.93 -0.40 -0.12 16 31 H 0.06 0.27 7.71 -51.93 -0.40 -0.13 16 32 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.14 0.91 6.45 -52.49 -0.34 0.57 16 34 H 0.17 1.38 8.06 -52.49 -0.42 0.95 16 35 H 0.41 7.94 7.95 -40.82 -0.32 7.61 16 36 H 0.06 1.38 7.98 -51.93 -0.41 0.96 16 37 H 0.05 1.07 7.80 -51.93 -0.40 0.67 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.05 0.91 7.80 -51.93 -0.41 0.50 16 40 H 0.05 0.83 7.82 -51.93 -0.41 0.42 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.15 2.20 7.64 -52.49 -0.40 1.80 16 LS Contribution 352.83 15.07 5.32 5.32 Total: -1.00 -31.40 352.83 -8.21 -39.61 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -5.82 Total: 9.76 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -2.35 Total: 3.63 kcal Atomic # 7 Polarization: -60.28 SS G_CDS: -0.22 Total: -60.50 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.11 Total: -14.48 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.40 -8.21 -39.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097628222.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.299 kcal (2) G-P(sol) polarization free energy of solvation -31.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds