Wall clock time and date at job start Tue Mar 31 2020 11:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35745 * 117.00205 * 2 1 4 4 C 1.39217 * 120.81065 * 0.02562 * 3 2 1 5 5 C 1.38322 * 119.28419 * 179.97438 * 4 3 2 6 6 N 1.31604 * 120.97221 * 359.97438 * 5 4 3 7 7 C 1.32795 * 121.78385 * 0.02562 * 6 5 4 8 8 C 1.48188 * 119.69993 * 180.02562 * 7 6 5 9 9 O 1.21517 * 119.99904 * 179.97438 * 8 7 6 10 10 N 1.34777 * 119.99835 * 359.97092 * 8 7 6 11 11 C 1.46502 * 119.99612 * 180.02562 * 10 8 7 12 12 H 1.08996 * 110.55944 * 36.45331 * 11 10 8 13 13 C 1.54848 * 110.62877 * 273.54845 * 11 10 8 14 14 C 1.55842 * 103.44781 * 241.51189 * 13 11 10 15 15 H 1.09003 * 115.55916 * 158.80994 * 14 13 11 16 16 C 1.55839 * 105.06605 * 287.42636 * 14 13 11 17 17 C 1.56682 * 102.60129 * 72.29937 * 16 14 13 18 18 C 1.55838 * 103.60036 * 359.66547 * 17 16 14 19 19 H 1.09007 * 116.13136 * 159.38142 * 18 17 16 20 20 N 1.50238 * 101.05286 * 33.16893 * 18 17 16 21 21 C 1.36933 * 130.84244 * 126.04982 * 20 18 17 22 22 H 1.08004 * 119.99921 * 0.02562 * 21 20 18 23 23 C 1.38810 * 120.00560 * 180.02562 * 21 20 18 24 24 N 1.31624 * 119.99657 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00401 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46769 * 60.00125 * 25 23 21 27 27 H 1.48494 * 109.47169 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.47361 * 300.00524 * 25 23 21 29 29 C 1.39105 * 120.60408 * 359.97438 * 7 6 5 30 30 H 1.08999 * 109.47466 * 300.00224 * 1 2 3 31 31 H 1.08997 * 109.46714 * 59.99932 * 1 2 3 32 32 H 1.08998 * 109.47227 * 180.02562 * 1 2 3 33 33 H 1.07997 * 120.35987 * 359.95282 * 4 3 2 34 34 H 1.07996 * 119.51000 * 179.97438 * 5 4 3 35 35 H 0.96997 * 119.99757 * 0.02562 * 10 8 7 36 36 H 1.09003 * 110.62813 * 0.02562 * 13 11 10 37 37 H 1.08998 * 110.62685 * 123.02108 * 13 11 10 38 38 H 1.09001 * 110.62865 * 190.31300 * 16 14 13 39 39 H 1.09003 * 110.62243 * 313.33136 * 16 14 13 40 40 H 1.09002 * 110.35753 * 241.22091 * 17 16 14 41 41 H 1.09001 * 110.88774 * 118.36949 * 17 16 14 42 42 H 0.96999 * 120.00066 * 179.97438 * 24 23 21 43 43 H 1.08000 * 120.51143 * 179.72334 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3037 2.3877 0.0005 5 6 1.9643 3.6030 0.0011 6 7 3.2792 3.6591 0.0016 7 6 4.0261 2.5611 0.0011 8 6 5.5034 2.6781 0.0023 9 8 6.1921 1.6770 0.0023 10 7 6.0830 3.8949 0.0032 11 6 7.5434 4.0104 0.0038 12 1 7.9900 3.2227 -0.6029 13 6 8.0938 3.9632 1.4504 14 6 8.7911 5.3468 1.6183 15 1 8.9341 5.6797 2.6463 16 6 10.0850 5.2558 0.7546 17 6 9.5246 5.3100 -0.7075 18 6 7.9831 5.4163 -0.5054 19 1 7.4144 5.8103 -1.3478 20 7 7.9135 6.2170 0.7639 21 6 7.2533 7.3812 1.0532 22 1 6.6599 7.8686 0.2937 23 6 7.3464 7.9351 2.3226 24 7 8.0699 7.3413 3.2481 25 14 6.4463 9.5236 2.7170 26 1 4.9878 9.3289 2.5168 27 1 6.7054 9.9018 4.1294 28 1 6.9295 10.6026 1.8185 29 6 3.4345 1.3021 0.0006 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 0.2243 2.3532 0.0002 34 1 1.3927 4.5192 0.0011 35 1 5.5331 4.6939 0.0035 36 1 7.2802 3.8533 2.1674 37 1 8.8155 3.1537 1.5604 38 1 10.7365 6.1081 0.9478 39 1 10.6092 4.3194 0.9459 40 1 9.7793 4.3968 -1.2454 41 1 9.9037 6.1843 -1.2368 42 1 8.1354 7.7285 4.1351 43 1 4.0435 0.4102 -0.0043 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097628222.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:12 Heat of formation + Delta-G solvation = -6.335256 kcal Electronic energy + Delta-G solvation = -26600.276111 eV Core-core repulsion = 22839.541330 eV Total energy + Delta-G solvation = -3760.734781 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.94882 -41.08356 -39.92808 -38.93500 -35.36682 -34.38635 -32.71540 -32.53122 -30.93911 -30.34128 -29.38175 -28.48479 -26.16763 -25.31008 -24.44642 -22.88736 -21.52141 -21.44915 -20.40115 -19.57755 -18.82298 -18.41690 -17.46984 -17.09182 -16.91161 -16.74472 -16.69575 -16.11472 -15.91113 -15.62362 -15.41747 -14.97611 -14.81191 -14.50445 -14.37544 -13.69559 -13.63985 -13.38692 -12.90399 -12.84904 -12.75975 -12.64740 -12.54313 -12.32985 -12.09225 -11.97739 -11.90967 -11.69128 -11.44790 -11.03549 -10.92507 -10.83548 -10.60355 -10.41454 -10.01491 -9.93991 -8.84717 -7.72626 -5.12538 -0.47316 0.19670 1.50474 1.52893 1.58449 1.67159 1.86144 2.35603 2.53313 2.79314 3.13343 3.40071 3.47294 3.56749 3.78709 3.95830 4.00854 4.06656 4.14816 4.29741 4.33661 4.38331 4.45770 4.47774 4.48522 4.63476 4.67955 4.71029 4.75158 4.84655 4.90091 4.91788 5.09628 5.18320 5.19911 5.33139 5.39968 5.52887 5.59209 5.71310 5.91411 6.12972 6.29570 6.47402 6.81401 7.08563 7.15129 7.75487 8.61141 9.34502 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014667 B = 0.003724 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.539232 B = 7516.654881 C = 8885.000933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.325 6.325 3 C 0.160 3.840 4 C -0.225 4.225 5 C 0.132 3.868 6 N -0.503 5.503 7 C 0.099 3.901 8 C 0.562 3.438 9 O -0.570 6.570 10 N -0.681 5.681 11 C 0.135 3.865 12 H 0.091 0.909 13 C -0.133 4.133 14 C 0.139 3.861 15 H 0.114 0.886 16 C -0.131 4.131 17 C -0.116 4.116 18 C 0.127 3.873 19 H 0.102 0.898 20 N -0.609 5.609 21 C -0.214 4.214 22 H 0.084 0.916 23 C -0.069 4.069 24 N -0.949 5.949 25 Si 0.975 3.025 26 H -0.279 1.279 27 H -0.301 1.301 28 H -0.280 1.280 29 C -0.159 4.159 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.123 0.877 33 H 0.185 0.815 34 H 0.198 0.802 35 H 0.412 0.588 36 H 0.028 0.972 37 H 0.069 0.931 38 H 0.040 0.960 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.062 0.938 42 H 0.245 0.755 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.031 -11.451 -8.876 20.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.236 6.236 3 C 0.106 3.894 4 C -0.245 4.245 5 C -0.027 4.027 6 N -0.218 5.218 7 C -0.037 4.037 8 C 0.347 3.653 9 O -0.450 6.450 10 N -0.329 5.329 11 C 0.029 3.971 12 H 0.109 0.891 13 C -0.173 4.173 14 C 0.033 3.967 15 H 0.132 0.868 16 C -0.170 4.170 17 C -0.156 4.156 18 C 0.019 3.981 19 H 0.120 0.880 20 N -0.330 5.330 21 C -0.343 4.343 22 H 0.102 0.898 23 C -0.261 4.261 24 N -0.599 5.599 25 Si 0.805 3.195 26 H -0.206 1.206 27 H -0.227 1.227 28 H -0.207 1.207 29 C -0.182 4.182 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.141 0.859 33 H 0.202 0.798 34 H 0.215 0.785 35 H 0.248 0.752 36 H 0.047 0.953 37 H 0.088 0.912 38 H 0.059 0.941 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.081 0.919 42 H 0.054 0.946 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -14.111 -11.315 -8.700 20.071 hybrid contribution -1.028 0.484 0.741 1.357 sum -15.139 -10.830 -7.959 20.245 Atomic orbital electron populations 1.23552 0.75048 1.06376 1.03188 1.86088 1.24596 1.25408 1.87528 1.19210 0.91383 0.86123 0.92664 1.22784 1.03589 0.91642 1.06498 1.23252 0.88683 0.99228 0.91534 1.67622 1.09118 1.31079 1.13992 1.20747 0.93484 0.89571 0.99925 1.18189 0.86779 0.83681 0.76631 1.90713 1.64387 1.37308 1.52640 1.45868 1.08242 1.07960 1.70855 1.22622 0.78665 0.98972 0.96858 0.89109 1.23337 0.99257 0.99099 0.95646 1.23558 0.88662 0.86827 0.97677 0.86833 1.23264 0.97679 0.99978 0.96114 1.23106 0.94727 1.01507 0.96253 1.23374 0.96009 0.88745 0.89933 0.87989 1.46689 1.54816 1.23574 1.07943 1.19318 1.21406 0.97563 0.95976 0.89789 1.25439 1.02126 1.02274 0.96235 1.69723 1.45498 1.41119 1.03559 0.85185 0.78382 0.79803 0.76161 1.20553 1.22714 1.20666 1.21353 0.93449 0.98784 1.04599 0.90838 0.90533 0.85905 0.79755 0.78519 0.75175 0.95291 0.91210 0.94139 0.90720 0.89847 0.91935 0.94586 0.83885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.84 113.37 1.12 1.21 16 2 O -0.32 -6.04 10.51 -90.70 -0.95 -6.99 16 3 C 0.16 3.50 6.73 22.74 0.15 3.65 16 4 C -0.22 -3.68 9.12 22.53 0.21 -3.47 16 5 C 0.13 2.69 11.17 84.75 0.95 3.63 16 6 N -0.50 -14.84 9.54 -185.14 -1.77 -16.61 16 7 C 0.10 3.22 6.75 41.85 0.28 3.51 16 8 C 0.56 21.32 7.81 86.89 0.68 22.00 16 9 O -0.57 -23.95 16.04 -3.77 -0.06 -24.01 16 10 N -0.68 -26.00 5.09 -437.44 -2.23 -28.22 16 11 C 0.14 5.18 2.73 46.61 0.13 5.31 16 12 H 0.09 3.31 7.36 -2.39 -0.02 3.30 16 13 C -0.13 -5.71 6.22 32.21 0.20 -5.51 16 14 C 0.14 6.59 4.67 46.22 0.22 6.80 16 15 H 0.11 6.33 5.52 -2.39 -0.01 6.32 16 16 C -0.13 -5.13 6.58 32.86 0.22 -4.91 16 17 C -0.12 -4.01 6.49 32.86 0.21 -3.80 16 18 C 0.13 4.90 5.04 46.23 0.23 5.14 16 19 H 0.10 3.67 8.14 -2.38 -0.02 3.65 16 20 N -0.61 -29.55 2.99 -615.24 -1.84 -31.39 16 21 C -0.21 -11.45 10.59 84.03 0.89 -10.56 16 22 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 23 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 24 N -0.95 -55.91 10.47 21.65 0.23 -55.69 16 25 Si 0.98 45.29 29.55 68.60 2.03 47.32 16 26 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 27 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 28 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 29 C -0.16 -4.57 9.60 22.72 0.22 -4.35 16 30 H 0.07 0.39 7.71 -2.39 -0.02 0.38 16 31 H 0.08 0.36 7.71 -2.39 -0.02 0.34 16 32 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.19 1.36 6.45 -2.91 -0.02 1.35 16 34 H 0.20 2.57 8.06 -2.91 -0.02 2.54 16 35 H 0.41 16.02 7.95 -92.71 -0.74 15.29 16 36 H 0.03 1.38 7.98 -2.39 -0.02 1.36 16 37 H 0.07 2.72 7.80 -2.39 -0.02 2.71 16 38 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.07 2.54 7.80 -2.39 -0.02 2.52 16 40 H 0.08 2.38 7.82 -2.39 -0.02 2.37 16 41 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.24 14.22 8.31 -92.71 -0.77 13.45 16 43 H 0.14 4.27 7.64 -2.91 -0.02 4.24 16 Total: -1.00 -71.12 352.83 1.87 -69.25 By element: Atomic # 1 Polarization: 30.72 SS G_CDS: 0.31 Total: 31.02 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: 6.16 Total: 15.31 kcal Atomic # 7 Polarization: -126.30 SS G_CDS: -5.61 Total: -131.90 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -1.01 Total: -31.00 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -71.12 1.87 -69.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097628222.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.916 kcal (2) G-P(sol) polarization free energy of solvation -71.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds