Wall clock time and date at job start Tue Mar 31 2020 11:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36953 * 119.70379 * 2 1 4 4 C 1.47877 * 119.75571 * 0.02562 * 3 2 1 5 5 O 1.21543 * 120.00571 * 359.81427 * 4 3 2 6 6 N 1.34776 * 119.99980 * 179.81598 * 4 3 2 7 7 C 1.46502 * 120.00165 * 179.97438 * 6 4 3 8 8 H 1.08996 * 110.56033 * 32.10286 * 7 6 4 9 9 C 1.54214 * 110.49589 * 269.09104 * 7 6 4 10 10 C 1.55845 * 103.56894 * 241.50502 * 9 7 6 11 11 H 1.09000 * 116.12950 * 159.05965 * 10 9 7 12 12 C 1.55841 * 105.06399 * 288.09153 * 10 9 7 13 13 C 1.54857 * 103.44583 * 71.82288 * 12 10 9 14 14 C 1.55852 * 110.62665 * 154.99748 * 7 6 4 15 15 H 1.09004 * 116.12393 * 319.34540 * 14 7 6 16 16 N 1.50243 * 101.04805 * 32.85440 * 10 9 7 17 17 C 1.36930 * 130.84264 * 125.99446 * 16 10 9 18 18 H 1.08002 * 120.00180 * 162.04947 * 17 16 10 19 19 C 1.38816 * 119.99949 * 342.05071 * 17 16 10 20 20 N 1.31614 * 119.99865 * 336.05071 * 19 17 16 21 21 Si 1.86800 * 119.99840 * 156.04989 * 19 17 16 22 22 H 1.48505 * 109.47030 * 180.02562 * 21 19 17 23 23 H 1.48499 * 109.47137 * 60.00209 * 21 19 17 24 24 H 1.48499 * 109.47037 * 299.99808 * 21 19 17 25 25 C 1.36291 * 120.48237 * 180.27188 * 3 2 1 26 26 C 1.40405 * 119.90996 * 359.48483 * 25 3 2 27 27 C 1.36109 * 119.41732 * 0.48874 * 26 25 3 28 28 C 1.34669 * 119.69862 * 179.97438 * 2 1 3 29 29 O 1.21963 * 119.96028 * 0.02562 * 28 2 1 30 30 H 1.09007 * 109.47106 * 59.56418 * 1 2 3 31 31 H 1.08997 * 109.47322 * 179.55971 * 1 2 3 32 32 H 1.09000 * 109.47334 * 299.56896 * 1 2 3 33 33 H 0.97003 * 119.99651 * 359.97438 * 6 4 3 34 34 H 1.09004 * 110.64657 * 122.93952 * 9 7 6 35 35 H 1.09002 * 110.49859 * 0.02562 * 9 7 6 36 36 H 1.09001 * 110.62738 * 190.31065 * 12 10 9 37 37 H 1.09000 * 110.62881 * 313.16895 * 12 10 9 38 38 H 1.08997 * 110.62618 * 118.48812 * 13 12 10 39 39 H 1.09004 * 110.62249 * 241.50986 * 13 12 10 40 40 H 0.97003 * 119.99989 * 358.30538 * 20 19 17 41 41 H 1.08006 * 120.04408 * 179.70366 * 25 3 2 42 42 H 1.07994 * 120.29325 * 180.22758 * 26 25 3 43 43 H 1.07995 * 120.24564 * 179.77661 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1436 1.1896 0.0000 4 6 1.3922 2.4632 0.0006 5 8 0.1768 2.4519 -0.0024 6 7 2.0550 3.6367 0.0043 7 6 1.3106 4.8985 0.0043 8 1 0.3701 4.7880 0.5439 9 6 1.0600 5.3776 -1.4399 10 6 1.7989 6.7482 -1.5039 11 1 2.0609 7.1063 -2.4996 12 6 0.9293 7.7175 -0.6479 13 6 1.1809 7.2402 0.8036 14 6 2.1685 6.0420 0.6251 15 1 2.7559 5.7781 1.5045 16 7 2.9516 6.4975 -0.5735 17 6 4.3009 6.6359 -0.7617 18 1 4.9624 6.6892 0.0903 19 6 4.8185 6.7075 -2.0478 20 7 4.1491 6.1907 -3.0563 21 14 6.4650 7.5375 -2.3469 22 1 6.7914 7.4823 -3.7946 23 1 7.5209 6.8355 -1.5739 24 1 6.3914 8.9549 -1.9103 25 6 3.5064 1.2081 -0.0056 26 6 4.2230 0.0007 -0.0004 27 6 3.5447 -1.1793 0.0000 28 6 2.1322 -1.1698 0.0005 29 8 1.5161 -2.2224 0.0005 30 1 -0.3634 0.5206 -0.8861 31 1 -0.3634 -1.0276 -0.0079 32 1 -0.3634 0.5071 0.8938 33 1 3.0250 3.6458 0.0070 34 1 -0.0068 5.5076 -1.6220 35 1 1.4894 4.6757 -2.1548 36 1 1.2624 8.7474 -0.7766 37 1 -0.1244 7.6206 -0.9095 38 1 1.6388 8.0333 1.3947 39 1 0.2516 6.9045 1.2639 40 1 3.3059 5.7382 -2.8977 41 1 4.0344 2.1503 -0.0104 42 1 5.3029 0.0082 -0.0011 43 1 4.0824 -2.1159 0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097817066.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:51 Heat of formation + Delta-G solvation = 18.244527 kcal Electronic energy + Delta-G solvation = -27330.590960 eV Core-core repulsion = 23570.922038 eV Total energy + Delta-G solvation = -3759.668921 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -41.60601 -40.00821 -38.72042 -36.75586 -35.02147 -33.90629 -32.90505 -30.69135 -29.23483 -28.94969 -27.85684 -27.61788 -24.92865 -24.06162 -22.73155 -21.94149 -20.49013 -20.06974 -19.04348 -17.92629 -17.73689 -17.43627 -17.02516 -16.30847 -15.93122 -15.63342 -14.89051 -14.72122 -14.54678 -14.28057 -13.88777 -13.79456 -13.43410 -13.12345 -12.80240 -12.58798 -12.53141 -12.21278 -11.97240 -11.80442 -11.70358 -11.53374 -10.88057 -10.82449 -10.74824 -10.54469 -10.28389 -10.22747 -10.17823 -9.98293 -9.89347 -9.56045 -9.49686 -8.92733 -8.62444 -8.14036 -7.14936 -6.28701 -3.30589 0.31612 1.54165 2.37434 2.82238 3.18348 3.38510 3.44090 3.56896 3.60939 4.37672 4.40377 4.47651 4.71255 4.80952 5.02437 5.09265 5.17695 5.32300 5.38250 5.42350 5.44188 5.60814 5.69794 5.70185 5.75635 5.80971 5.84916 5.86357 5.93479 6.04436 6.08053 6.16448 6.24129 6.31462 6.39875 6.50438 6.65531 6.66953 6.85731 6.93996 7.05882 7.40624 7.57689 7.87328 8.12492 8.24500 8.78938 9.61619 10.30349 11.11028 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014701 B = 0.004275 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.118137 B = 6548.344936 C = 7909.955419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.476 5.476 3 C 0.122 3.878 4 C 0.549 3.451 5 O -0.534 6.534 6 N -0.683 5.683 7 C 0.128 3.872 8 H 0.086 0.914 9 C -0.140 4.140 10 C 0.141 3.859 11 H 0.107 0.893 12 C -0.135 4.135 13 C -0.125 4.125 14 C 0.126 3.874 15 H 0.093 0.907 16 N -0.594 5.594 17 C -0.329 4.329 18 H 0.066 0.934 19 C -0.023 4.023 20 N -0.919 5.919 21 Si 1.069 2.931 22 H -0.285 1.285 23 H -0.293 1.293 24 H -0.294 1.294 25 C -0.181 4.181 26 C -0.022 4.022 27 C -0.224 4.224 28 C 0.512 3.488 29 O -0.555 6.555 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.409 0.591 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.271 0.729 41 H 0.153 0.847 42 H 0.144 0.856 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.913 -5.727 7.016 9.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.188 5.188 3 C 0.011 3.989 4 C 0.334 3.666 5 O -0.413 6.413 6 N -0.334 5.334 7 C 0.022 3.978 8 H 0.104 0.896 9 C -0.181 4.181 10 C 0.034 3.966 11 H 0.125 0.875 12 C -0.174 4.174 13 C -0.165 4.165 14 C 0.018 3.982 15 H 0.111 0.889 16 N -0.316 5.316 17 C -0.456 4.456 18 H 0.084 0.916 19 C -0.225 4.225 20 N -0.559 5.559 21 Si 0.899 3.101 22 H -0.211 1.211 23 H -0.220 1.220 24 H -0.221 1.221 25 C -0.206 4.206 26 C -0.044 4.044 27 C -0.246 4.246 28 C 0.314 3.686 29 O -0.438 6.438 30 H 0.105 0.895 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.246 0.754 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.171 0.829 42 H 0.162 0.838 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -2.887 -5.923 5.803 8.780 hybrid contribution -0.504 -0.336 1.151 1.300 sum -3.391 -6.259 6.954 9.951 Atomic orbital electron populations 1.22298 0.76049 1.04175 1.04988 1.45390 1.09967 1.05150 1.58245 1.20259 0.92482 0.86931 0.99251 1.17834 0.87177 0.83357 0.78260 1.90790 1.12885 1.87166 1.50474 1.45921 1.11249 1.04780 1.71404 1.22624 0.95099 0.82096 0.97978 0.89562 1.23321 0.99392 0.99644 0.95692 1.23011 0.86360 0.91693 0.95567 0.87535 1.22964 0.98482 0.99962 0.96009 1.22943 0.98149 0.98417 0.96994 1.23312 0.91462 0.91219 0.92234 0.88933 1.46583 1.00925 1.74679 1.09392 1.19679 0.80427 1.50936 0.94557 0.91629 1.25770 1.05155 0.99767 0.91855 1.70812 1.17348 1.34075 1.33688 0.83429 0.74512 0.76121 0.76012 1.21076 1.22003 1.22124 1.21040 0.91271 1.00524 1.07754 1.21443 1.01205 0.91340 0.90371 1.22364 0.92605 1.00260 1.09349 1.17328 0.89331 0.82518 0.79432 1.90917 1.69960 1.29121 1.53765 0.89460 0.89114 0.89614 0.75422 0.92029 0.91612 0.92402 0.92715 0.91985 0.92612 0.91701 0.82944 0.83809 0.82989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.89 8.93 59.85 0.53 1.42 16 2 N -0.48 -6.89 3.02 -122.80 -0.37 -7.26 16 3 C 0.12 1.69 6.63 -82.33 -0.55 1.14 16 4 C 0.55 8.41 7.72 -12.32 -0.10 8.32 16 5 O -0.53 -9.08 12.81 5.33 0.07 -9.01 16 6 N -0.68 -10.54 4.99 -52.65 -0.26 -10.80 16 7 C 0.13 2.11 2.79 -65.77 -0.18 1.92 16 8 H 0.09 1.39 7.24 -51.93 -0.38 1.01 16 9 C -0.14 -2.54 6.06 -24.58 -0.15 -2.69 16 10 C 0.14 2.85 3.80 -62.80 -0.24 2.61 16 11 H 0.11 2.47 6.67 -51.93 -0.35 2.13 16 12 C -0.13 -2.30 6.44 -24.24 -0.16 -2.45 16 13 C -0.13 -1.97 6.46 -23.98 -0.15 -2.13 16 14 C 0.13 2.19 5.08 -62.54 -0.32 1.87 16 15 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 16 N -0.59 -12.81 2.82 -145.54 -0.41 -13.22 16 17 C -0.33 -8.11 10.41 -15.06 -0.16 -8.27 16 18 H 0.07 1.62 7.94 -52.49 -0.42 1.20 16 19 C -0.02 -0.60 5.32 -17.43 -0.09 -0.70 16 20 N -0.92 -25.21 12.80 55.49 0.71 -24.50 16 21 Si 1.07 23.39 29.98 -169.99 -5.10 18.29 16 22 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 25 C -0.18 -2.13 9.51 -39.47 -0.38 -2.51 16 26 C -0.02 -0.23 10.08 -39.53 -0.40 -0.62 16 27 C -0.22 -2.66 10.00 -39.20 -0.39 -3.05 16 28 C 0.51 7.75 7.43 -15.16 -0.11 7.63 16 29 O -0.55 -9.94 16.39 4.95 0.08 -9.86 16 30 H 0.09 1.21 7.19 -51.93 -0.37 0.83 16 31 H 0.09 1.20 6.86 -51.93 -0.36 0.85 16 32 H 0.09 1.13 7.25 -51.93 -0.38 0.75 16 33 H 0.41 6.20 6.63 -40.82 -0.27 5.93 16 34 H 0.06 1.02 7.82 -51.93 -0.41 0.62 16 35 H 0.07 1.33 7.51 -51.93 -0.39 0.94 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.05 0.82 7.82 -51.93 -0.41 0.42 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.06 0.76 7.83 -51.93 -0.41 0.36 16 40 H 0.27 7.32 5.58 -40.82 -0.23 7.09 16 41 H 0.15 1.65 6.29 -52.48 -0.33 1.32 16 42 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 43 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 343.96 15.07 5.18 5.18 Total: -1.00 -30.40 343.96 -8.52 -38.92 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -5.59 Total: 9.75 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: -2.83 Total: 2.50 kcal Atomic # 7 Polarization: -55.45 SS G_CDS: -0.33 Total: -55.78 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: 0.15 Total: -18.87 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -5.10 Total: 18.29 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.40 -8.52 -38.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097817066.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.169 kcal (2) G-P(sol) polarization free energy of solvation -30.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds