Wall clock time and date at job start Tue Mar 31 2020 11:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36953 * 119.70379 * 2 1 4 4 C 1.47877 * 119.75571 * 0.02562 * 3 2 1 5 5 O 1.21543 * 120.00571 * 359.81427 * 4 3 2 6 6 N 1.34776 * 119.99980 * 179.81598 * 4 3 2 7 7 C 1.46502 * 120.00165 * 179.97438 * 6 4 3 8 8 H 1.08996 * 110.56033 * 32.10286 * 7 6 4 9 9 C 1.54214 * 110.49589 * 269.09104 * 7 6 4 10 10 C 1.55845 * 103.56894 * 241.50502 * 9 7 6 11 11 H 1.09000 * 116.12950 * 159.05965 * 10 9 7 12 12 C 1.55841 * 105.06399 * 288.09153 * 10 9 7 13 13 C 1.54857 * 103.44583 * 71.82288 * 12 10 9 14 14 C 1.55852 * 110.62665 * 154.99748 * 7 6 4 15 15 H 1.09004 * 116.12393 * 319.34540 * 14 7 6 16 16 N 1.50243 * 101.04805 * 32.85440 * 10 9 7 17 17 C 1.36930 * 130.84264 * 125.99446 * 16 10 9 18 18 H 1.08002 * 120.00180 * 162.04947 * 17 16 10 19 19 C 1.38816 * 119.99949 * 342.05071 * 17 16 10 20 20 N 1.31614 * 119.99865 * 336.05071 * 19 17 16 21 21 Si 1.86800 * 119.99840 * 156.04989 * 19 17 16 22 22 H 1.48505 * 109.47030 * 180.02562 * 21 19 17 23 23 H 1.48499 * 109.47137 * 60.00209 * 21 19 17 24 24 H 1.48499 * 109.47037 * 299.99808 * 21 19 17 25 25 C 1.36291 * 120.48237 * 180.27188 * 3 2 1 26 26 C 1.40405 * 119.90996 * 359.48483 * 25 3 2 27 27 C 1.36109 * 119.41732 * 0.48874 * 26 25 3 28 28 C 1.34669 * 119.69862 * 179.97438 * 2 1 3 29 29 O 1.21963 * 119.96028 * 0.02562 * 28 2 1 30 30 H 1.09007 * 109.47106 * 59.56418 * 1 2 3 31 31 H 1.08997 * 109.47322 * 179.55971 * 1 2 3 32 32 H 1.09000 * 109.47334 * 299.56896 * 1 2 3 33 33 H 0.97003 * 119.99651 * 359.97438 * 6 4 3 34 34 H 1.09004 * 110.64657 * 122.93952 * 9 7 6 35 35 H 1.09002 * 110.49859 * 0.02562 * 9 7 6 36 36 H 1.09001 * 110.62738 * 190.31065 * 12 10 9 37 37 H 1.09000 * 110.62881 * 313.16895 * 12 10 9 38 38 H 1.08997 * 110.62618 * 118.48812 * 13 12 10 39 39 H 1.09004 * 110.62249 * 241.50986 * 13 12 10 40 40 H 0.97003 * 119.99989 * 358.30538 * 20 19 17 41 41 H 1.08006 * 120.04408 * 179.70366 * 25 3 2 42 42 H 1.07994 * 120.29325 * 180.22758 * 26 25 3 43 43 H 1.07995 * 120.24564 * 179.77661 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1436 1.1896 0.0000 4 6 1.3922 2.4632 0.0006 5 8 0.1768 2.4519 -0.0024 6 7 2.0550 3.6367 0.0043 7 6 1.3106 4.8985 0.0043 8 1 0.3701 4.7880 0.5439 9 6 1.0600 5.3776 -1.4399 10 6 1.7989 6.7482 -1.5039 11 1 2.0609 7.1063 -2.4996 12 6 0.9293 7.7175 -0.6479 13 6 1.1809 7.2402 0.8036 14 6 2.1685 6.0420 0.6251 15 1 2.7559 5.7781 1.5045 16 7 2.9516 6.4975 -0.5735 17 6 4.3009 6.6359 -0.7617 18 1 4.9624 6.6892 0.0903 19 6 4.8185 6.7075 -2.0478 20 7 4.1491 6.1907 -3.0563 21 14 6.4650 7.5375 -2.3469 22 1 6.7914 7.4823 -3.7946 23 1 7.5209 6.8355 -1.5739 24 1 6.3914 8.9549 -1.9103 25 6 3.5064 1.2081 -0.0056 26 6 4.2230 0.0007 -0.0004 27 6 3.5447 -1.1793 0.0000 28 6 2.1322 -1.1698 0.0005 29 8 1.5161 -2.2224 0.0005 30 1 -0.3634 0.5206 -0.8861 31 1 -0.3634 -1.0276 -0.0079 32 1 -0.3634 0.5071 0.8938 33 1 3.0250 3.6458 0.0070 34 1 -0.0068 5.5076 -1.6220 35 1 1.4894 4.6757 -2.1548 36 1 1.2624 8.7474 -0.7766 37 1 -0.1244 7.6206 -0.9095 38 1 1.6388 8.0333 1.3947 39 1 0.2516 6.9045 1.2639 40 1 3.3059 5.7382 -2.8977 41 1 4.0344 2.1503 -0.0104 42 1 5.3029 0.0082 -0.0011 43 1 4.0824 -2.1159 0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097817066.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:47 Heat of formation + Delta-G solvation = -0.244842 kcal Electronic energy + Delta-G solvation = -27331.392719 eV Core-core repulsion = 23570.922038 eV Total energy + Delta-G solvation = -3760.470681 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 6.41 seconds Orbital eigenvalues (eV) -42.70949 -41.36430 -40.04400 -37.90923 -36.17417 -35.15093 -34.62794 -31.84037 -30.86600 -30.37435 -29.22091 -28.69958 -26.12525 -25.74132 -23.80771 -23.17916 -21.78497 -21.62524 -20.47106 -19.46119 -19.11319 -18.54090 -18.07616 -17.44793 -17.18784 -16.84776 -16.46318 -15.83621 -15.67808 -15.61208 -15.50599 -15.32046 -14.90061 -14.28334 -14.12020 -13.80933 -13.52381 -13.46299 -13.31605 -13.18621 -12.98665 -12.83910 -12.56150 -12.37406 -12.15072 -11.93233 -11.90868 -11.57923 -11.47737 -11.31922 -11.20245 -11.16559 -10.81802 -10.54011 -10.14750 -9.22252 -8.92820 -8.24818 -5.20997 -0.70486 0.52157 1.28053 1.63508 1.64525 1.70690 1.87714 2.01713 2.52328 2.66300 3.23732 3.24924 3.39740 3.49195 3.78937 3.86194 3.94975 4.06628 4.13246 4.16557 4.29268 4.34438 4.37139 4.38350 4.49510 4.53432 4.68043 4.69405 4.79791 4.81709 4.90217 4.91108 5.06897 5.08324 5.11079 5.25241 5.30067 5.34452 5.47528 5.55677 5.70844 5.82404 6.32643 6.37277 6.75533 6.89903 6.90837 7.74437 8.51619 9.17506 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014701 B = 0.004275 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.118137 B = 6548.344936 C = 7909.955419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.480 5.480 3 C 0.097 3.903 4 C 0.553 3.447 5 O -0.554 6.554 6 N -0.683 5.683 7 C 0.139 3.861 8 H 0.100 0.900 9 C -0.131 4.131 10 C 0.130 3.870 11 H 0.067 0.933 12 C -0.127 4.127 13 C -0.116 4.116 14 C 0.127 3.873 15 H 0.104 0.896 16 N -0.615 5.615 17 C -0.319 4.319 18 H 0.065 0.935 19 C -0.075 4.075 20 N -0.955 5.955 21 Si 1.112 2.888 22 H -0.301 1.301 23 H -0.272 1.272 24 H -0.289 1.289 25 C -0.161 4.161 26 C -0.007 4.007 27 C -0.224 4.224 28 C 0.497 3.503 29 O -0.595 6.595 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.410 0.590 34 H 0.077 0.923 35 H 0.037 0.963 36 H 0.047 0.953 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.086 0.914 40 H 0.262 0.738 41 H 0.165 0.835 42 H 0.186 0.814 43 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.068 -5.584 8.786 10.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.192 5.192 3 C -0.013 4.013 4 C 0.338 3.662 5 O -0.434 6.434 6 N -0.333 5.333 7 C 0.033 3.967 8 H 0.118 0.882 9 C -0.171 4.171 10 C 0.024 3.976 11 H 0.085 0.915 12 C -0.166 4.166 13 C -0.156 4.156 14 C 0.020 3.980 15 H 0.122 0.878 16 N -0.338 5.338 17 C -0.448 4.448 18 H 0.083 0.917 19 C -0.271 4.271 20 N -0.599 5.599 21 Si 0.939 3.061 22 H -0.228 1.228 23 H -0.198 1.198 24 H -0.216 1.216 25 C -0.186 4.186 26 C -0.028 4.028 27 C -0.246 4.246 28 C 0.301 3.699 29 O -0.482 6.482 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.247 0.753 34 H 0.096 0.904 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.105 0.895 40 H 0.073 0.927 41 H 0.183 0.817 42 H 0.204 0.796 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -2.045 -5.755 7.618 9.764 hybrid contribution -0.773 -0.351 0.627 1.056 sum -2.818 -6.106 8.245 10.640 Atomic orbital electron populations 1.22214 0.76164 1.03912 1.04725 1.45412 1.10161 1.05350 1.58253 1.20162 0.93125 0.86011 1.01993 1.17993 0.86995 0.83720 0.77451 1.90777 1.13756 1.87483 1.51353 1.45841 1.11220 1.04606 1.71598 1.22481 0.95544 0.82190 0.96514 0.88226 1.23200 0.99737 0.97860 0.96299 1.22963 0.86907 0.93584 0.94196 0.91507 1.22900 0.99096 0.98409 0.96238 1.22906 0.99031 0.97573 0.96070 1.23509 0.91358 0.92035 0.91050 0.87805 1.46740 1.00474 1.75555 1.11077 1.19880 0.82069 1.48581 0.94234 0.91704 1.26782 1.07486 1.00635 0.92198 1.70887 1.17891 1.36573 1.34553 0.82839 0.72452 0.75772 0.75078 1.22783 1.19794 1.21601 1.21382 0.90523 1.01887 1.04790 1.21828 1.03076 0.89717 0.88219 1.22574 0.90988 1.01995 1.09000 1.17896 0.90601 0.82050 0.79338 1.90890 1.70878 1.30294 1.56104 0.90104 0.89310 0.89422 0.75278 0.90417 0.94436 0.93434 0.90284 0.91702 0.89520 0.92684 0.81725 0.79633 0.80919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.94 8.93 127.77 1.14 3.08 16 2 N -0.48 -13.71 3.02 -660.60 -1.99 -15.70 16 3 C 0.10 2.57 6.63 40.44 0.27 2.84 16 4 C 0.55 16.38 7.72 86.80 0.67 17.05 16 5 O -0.55 -18.39 12.81 -3.85 -0.05 -18.44 16 6 N -0.68 -20.12 4.99 -438.77 -2.19 -22.31 16 7 C 0.14 4.31 2.79 46.39 0.13 4.44 16 8 H 0.10 2.91 7.24 -2.39 -0.02 2.89 16 9 C -0.13 -4.67 6.06 31.99 0.19 -4.48 16 10 C 0.13 5.27 3.80 46.23 0.18 5.45 16 11 H 0.07 3.24 6.67 -2.39 -0.02 3.22 16 12 C -0.13 -4.11 6.44 32.21 0.21 -3.90 16 13 C -0.12 -3.30 6.46 32.38 0.21 -3.09 16 14 C 0.13 4.14 5.08 46.39 0.24 4.37 16 15 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 16 N -0.62 -26.12 2.82 -614.36 -1.73 -27.86 16 17 C -0.32 -15.59 10.41 84.04 0.87 -14.72 16 18 H 0.07 3.11 7.94 -2.91 -0.02 3.09 16 19 C -0.07 -3.86 5.32 84.86 0.45 -3.41 16 20 N -0.96 -53.77 12.80 21.65 0.28 -53.49 16 21 Si 1.11 47.29 29.98 68.60 2.06 49.34 16 22 H -0.30 -13.49 7.11 99.48 0.71 -12.79 16 23 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 24 H -0.29 -11.89 7.11 99.48 0.71 -11.19 16 25 C -0.16 -3.39 9.51 22.34 0.21 -3.18 16 26 C -0.01 -0.12 10.08 22.30 0.22 0.10 16 27 C -0.22 -4.80 10.00 22.52 0.23 -4.57 16 28 C 0.50 14.73 7.43 85.00 0.63 15.36 16 29 O -0.60 -21.52 16.39 -5.19 -0.09 -21.60 16 30 H 0.08 2.29 7.19 -2.38 -0.02 2.27 16 31 H 0.09 2.43 6.86 -2.39 -0.02 2.42 16 32 H 0.09 2.33 7.25 -2.39 -0.02 2.31 16 33 H 0.41 11.84 6.63 -92.71 -0.61 11.22 16 34 H 0.08 2.48 7.82 -2.38 -0.02 2.47 16 35 H 0.04 1.54 7.51 -2.39 -0.02 1.52 16 36 H 0.05 1.61 8.14 -2.39 -0.02 1.60 16 37 H 0.08 2.16 7.82 -2.39 -0.02 2.14 16 38 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.09 1.98 7.83 -2.39 -0.02 1.96 16 40 H 0.26 14.68 5.58 -92.71 -0.52 14.16 16 41 H 0.17 3.09 6.29 -2.91 -0.02 3.07 16 42 H 0.19 1.66 8.06 -2.91 -0.02 1.64 16 43 H 0.17 2.94 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -67.49 343.96 2.82 -64.67 By element: Atomic # 1 Polarization: 29.35 SS G_CDS: 0.68 Total: 30.04 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: 5.85 Total: 15.34 kcal Atomic # 7 Polarization: -113.72 SS G_CDS: -5.64 Total: -119.36 kcal Atomic # 8 Polarization: -39.90 SS G_CDS: -0.13 Total: -40.04 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.06 Total: 49.34 kcal Total: -67.49 2.82 -64.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097817066.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.428 kcal (2) G-P(sol) polarization free energy of solvation -67.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.41 seconds