Wall clock time and date at job start Tue Mar 31 2020 11:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35663 * 117.00258 * 2 1 4 4 C 1.39285 * 119.61872 * 180.02562 * 3 2 1 5 5 C 1.38335 * 119.30537 * 180.02562 * 4 3 2 6 6 C 1.38781 * 118.55858 * 359.97438 * 5 4 3 7 7 C 1.39124 * 119.18666 * 0.02562 * 6 5 4 8 8 C 1.48154 * 119.68731 * 179.97438 * 7 6 5 9 9 O 1.21516 * 119.99994 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99997 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00211 * 179.97438 * 10 8 7 12 12 H 1.09001 * 110.67969 * 32.01866 * 11 10 8 13 13 C 1.55472 * 110.75917 * 268.96405 * 11 10 8 14 14 C 1.55843 * 103.32733 * 241.51050 * 13 11 10 15 15 H 1.09003 * 116.12994 * 159.23577 * 14 13 11 16 16 C 1.56860 * 105.78191 * 288.56661 * 14 13 11 17 17 C 1.54853 * 103.35407 * 71.45036 * 16 14 13 18 18 C 1.55841 * 110.62653 * 155.00103 * 11 10 8 19 19 H 1.08998 * 115.56311 * 319.68327 * 18 11 10 20 20 N 1.50239 * 101.05193 * 33.02434 * 14 13 11 21 21 C 1.36936 * 130.84022 * 126.06502 * 20 14 13 22 22 H 1.08004 * 119.99830 * 189.78669 * 21 20 14 23 23 C 1.38808 * 120.00008 * 9.78414 * 21 20 14 24 24 N 1.31626 * 119.99681 * 201.20053 * 23 21 20 25 25 Si 1.86793 * 120.00055 * 21.19834 * 23 21 20 26 26 H 1.48500 * 109.47244 * 269.99901 * 25 23 21 27 27 H 1.48502 * 109.47169 * 149.99984 * 25 23 21 28 28 H 1.48500 * 109.47269 * 30.00143 * 25 23 21 29 29 N 1.31901 * 119.61781 * 0.25762 * 3 2 1 30 30 H 1.09004 * 109.46907 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47158 * 299.99701 * 1 2 3 32 32 H 1.09002 * 109.47172 * 59.99714 * 1 2 3 33 33 H 1.08001 * 120.35092 * 0.02562 * 4 3 2 34 34 H 1.08000 * 120.71960 * 179.97438 * 5 4 3 35 35 H 1.08002 * 120.40618 * 180.02562 * 6 5 4 36 36 H 0.96998 * 119.99961 * 0.02562 * 10 8 7 37 37 H 1.09001 * 110.61076 * 123.10076 * 13 11 10 38 38 H 1.08999 * 110.89697 * 0.05748 * 13 11 10 39 39 H 1.09001 * 110.43113 * 313.10936 * 16 14 13 40 40 H 1.08998 * 110.90696 * 190.02588 * 16 14 13 41 41 H 1.08996 * 110.62628 * 241.78625 * 17 16 14 42 42 H 1.08995 * 110.62388 * 118.76957 * 17 16 14 43 43 H 0.96994 * 119.99799 * 354.93794 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 3.4363 1.2723 -0.0005 5 6 4.0576 2.5083 0.0000 6 6 3.2666 3.6485 0.0005 7 6 1.8819 3.5136 0.0010 8 6 1.0268 4.7235 0.0022 9 8 1.5354 5.8270 0.0022 10 7 -0.3153 4.6001 0.0022 11 6 -1.1610 5.7964 0.0039 12 1 -0.6771 6.6105 -0.5358 13 6 -1.5003 6.2292 1.4580 14 6 -3.0536 6.1154 1.5134 15 1 -3.4934 6.0284 2.5070 16 6 -3.5995 7.2979 0.6392 17 6 -3.2540 6.8631 -0.8063 18 6 -2.5573 5.4825 -0.6128 19 1 -2.5497 4.8327 -1.4879 20 7 -3.2906 4.9558 0.5881 21 6 -3.9707 3.7826 0.7786 22 1 -3.9019 2.9933 0.0446 23 6 -4.7483 3.6078 1.9150 24 7 -5.0571 2.3944 2.3209 25 14 -5.3565 5.0946 2.8684 26 1 -4.3602 5.4573 3.9082 27 1 -6.6528 4.7707 3.5164 28 1 -5.5399 6.2378 1.9385 29 7 1.3192 2.3102 0.0052 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8900 33 1 4.0240 0.3662 -0.0014 34 1 5.1350 2.5842 0.0000 35 1 3.7203 4.6286 0.0005 36 1 -0.7214 3.7192 0.0018 37 1 -1.1841 7.2571 1.6361 38 1 -1.0400 5.5563 2.1814 39 1 -3.0883 8.2265 0.8933 40 1 -4.6773 7.4060 0.7605 41 1 -2.5717 7.5760 -1.2691 42 1 -4.1605 6.7556 -1.4019 43 1 -4.8042 1.6253 1.7867 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098137619.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:43 Heat of formation + Delta-G solvation = 21.422502 kcal Electronic energy + Delta-G solvation = -27189.187761 eV Core-core repulsion = 23429.656647 eV Total energy + Delta-G solvation = -3759.531114 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.92165 -39.85847 -38.70349 -37.56457 -34.08048 -32.82456 -32.51717 -30.96385 -29.51917 -29.15999 -28.38830 -27.31750 -24.71976 -23.55647 -23.00553 -21.84179 -20.30713 -20.10878 -19.28236 -18.33687 -17.68000 -17.39979 -16.26267 -16.17200 -16.11775 -15.83184 -15.41106 -14.80598 -14.40199 -14.25809 -13.93016 -13.60472 -13.42891 -13.30470 -13.17638 -12.74029 -12.35806 -11.86858 -11.79537 -11.66634 -11.52839 -11.32554 -11.19434 -10.92981 -10.69457 -10.57990 -10.33485 -10.15231 -9.92864 -9.76595 -9.49867 -9.40760 -9.25744 -8.80018 -8.68725 -8.50857 -7.24904 -6.33445 -3.21318 0.55881 1.10706 2.82535 2.96458 3.31412 3.35298 3.48210 3.64397 3.81076 4.03637 4.56621 4.64327 4.71197 4.84088 4.86054 5.10856 5.16550 5.31733 5.32270 5.33543 5.38869 5.41778 5.63765 5.68143 5.74817 5.75241 5.82087 5.86707 5.93180 5.95852 6.03149 6.16131 6.17792 6.25801 6.41641 6.50526 6.61813 6.72705 6.86900 6.96758 7.07892 7.36304 7.51080 7.91004 8.23328 8.41783 8.95338 9.50063 10.29584 11.15531 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014293 B = 0.004628 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.487842 B = 6048.807148 C = 7416.121724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.309 6.309 3 C 0.322 3.678 4 C -0.172 4.172 5 C -0.049 4.049 6 C -0.153 4.153 7 C 0.125 3.875 8 C 0.565 3.435 9 O -0.542 6.542 10 N -0.683 5.683 11 C 0.129 3.871 12 H 0.089 0.911 13 C -0.135 4.135 14 C 0.118 3.882 15 H 0.094 0.906 16 C -0.140 4.140 17 C -0.127 4.127 18 C 0.131 3.869 19 H 0.093 0.907 20 N -0.604 5.604 21 C -0.310 4.310 22 H 0.078 0.922 23 C -0.021 4.021 24 N -0.926 5.926 25 Si 1.058 2.942 26 H -0.296 1.296 27 H -0.302 1.302 28 H -0.275 1.275 29 N -0.512 5.512 30 H 0.098 0.902 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.145 0.855 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.415 0.585 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.067 0.933 41 H 0.057 0.943 42 H 0.063 0.937 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.871 1.416 -6.075 16.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.215 6.215 3 C 0.140 3.860 4 C -0.193 4.193 5 C -0.075 4.075 6 C -0.174 4.174 7 C -0.012 4.012 8 C 0.349 3.651 9 O -0.420 6.420 10 N -0.332 5.332 11 C 0.022 3.978 12 H 0.106 0.894 13 C -0.175 4.175 14 C 0.011 3.989 15 H 0.112 0.888 16 C -0.179 4.179 17 C -0.167 4.167 18 C 0.022 3.978 19 H 0.111 0.889 20 N -0.327 5.327 21 C -0.437 4.437 22 H 0.096 0.904 23 C -0.221 4.221 24 N -0.567 5.567 25 Si 0.892 3.108 26 H -0.226 1.226 27 H -0.230 1.230 28 H -0.201 1.201 29 N -0.239 5.239 30 H 0.116 0.884 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.163 0.837 34 H 0.166 0.834 35 H 0.168 0.832 36 H 0.252 0.748 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.395 2.123 -4.708 14.356 hybrid contribution 1.203 -0.845 -1.276 1.947 sum 14.598 1.277 -5.985 15.829 Atomic orbital electron populations 1.22964 0.76148 1.03382 1.03310 1.86220 1.23652 1.24004 1.87648 1.19806 0.89381 0.84592 0.92183 1.21275 0.91995 0.99836 1.06204 1.21419 1.00769 0.90852 0.94437 1.21974 0.93074 1.00767 1.01630 1.20933 0.92252 0.90377 0.97611 1.17874 0.82704 0.87169 0.77395 1.90749 1.74118 1.25768 1.51388 1.45881 1.04802 1.11553 1.70949 1.22735 0.91293 0.86527 0.97202 0.89354 1.23396 0.97720 1.00185 0.96231 1.23415 0.93040 0.87791 0.94613 0.88846 1.23356 1.01120 0.97598 0.95842 1.22871 1.00035 0.97022 0.96768 1.23124 0.89718 0.93593 0.91374 0.88904 1.46922 1.61174 1.17331 1.07253 1.20034 1.25048 0.89417 1.09193 0.90444 1.25719 0.97261 1.02416 0.96688 1.70932 1.51886 0.97463 1.36457 0.83920 0.75810 0.75499 0.75530 1.22570 1.23033 1.20093 1.67228 1.41003 0.98246 1.17427 0.88356 0.91482 0.92023 0.83707 0.83438 0.83223 0.74843 0.91685 0.91643 0.92370 0.91417 0.92394 0.91810 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 10.38 101.05 1.05 1.52 16 2 O -0.31 -4.13 10.47 -18.69 -0.20 -4.32 16 3 C 0.32 4.39 7.49 -17.13 -0.13 4.26 16 4 C -0.17 -1.81 10.05 -39.16 -0.39 -2.21 16 5 C -0.05 -0.47 10.16 -39.34 -0.40 -0.87 16 6 C -0.15 -1.86 9.63 -39.05 -0.38 -2.24 16 7 C 0.13 1.90 6.75 -83.03 -0.56 1.34 16 8 C 0.56 9.71 7.81 -12.19 -0.10 9.61 16 9 O -0.54 -10.18 15.96 5.35 0.09 -10.09 16 10 N -0.68 -12.05 5.09 -51.92 -0.26 -12.31 16 11 C 0.13 2.28 2.84 -65.10 -0.18 2.09 16 12 H 0.09 1.50 7.26 -51.93 -0.38 1.13 16 13 C -0.13 -2.51 6.27 -23.90 -0.15 -2.66 16 14 C 0.12 2.44 3.64 -62.23 -0.23 2.21 16 15 H 0.09 2.08 3.40 -51.93 -0.18 1.91 16 16 C -0.14 -2.48 6.27 -23.67 -0.15 -2.63 16 17 C -0.13 -2.11 6.46 -24.23 -0.16 -2.27 16 18 C 0.13 2.43 5.01 -62.80 -0.31 2.12 16 19 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 20 N -0.60 -13.70 2.82 -145.21 -0.41 -14.11 16 21 C -0.31 -8.32 10.81 -15.06 -0.16 -8.48 16 22 H 0.08 2.19 8.06 -52.48 -0.42 1.76 16 23 C -0.02 -0.59 5.49 -17.43 -0.10 -0.69 16 24 N -0.93 -28.17 13.70 55.49 0.76 -27.41 16 25 Si 1.06 25.85 25.01 -169.99 -4.25 21.60 16 26 H -0.30 -7.01 6.60 56.52 0.37 -6.63 16 27 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 28 H -0.27 -6.14 4.91 56.52 0.28 -5.86 16 29 N -0.51 -7.84 8.39 -9.88 -0.08 -7.92 16 30 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 32 H 0.06 0.79 8.11 -51.93 -0.42 0.37 16 33 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.15 1.69 7.63 -52.49 -0.40 1.29 16 36 H 0.41 7.67 7.98 -40.82 -0.33 7.34 16 37 H 0.06 1.07 7.88 -51.93 -0.41 0.67 16 38 H 0.06 1.31 8.00 -51.93 -0.42 0.90 16 39 H 0.06 0.88 7.88 -51.93 -0.41 0.47 16 40 H 0.07 1.26 6.49 -51.93 -0.34 0.92 16 41 H 0.06 0.82 7.85 -51.93 -0.41 0.41 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.26 7.82 8.73 -40.82 -0.36 7.46 16 LS Contribution 347.03 15.07 5.23 5.23 Total: -1.00 -31.74 347.03 -7.41 -39.15 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -5.94 Total: 9.09 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -2.34 Total: 1.11 kcal Atomic # 7 Polarization: -61.76 SS G_CDS: 0.00 Total: -61.76 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -0.11 Total: -14.41 kcal Atomic # 14 Polarization: 25.85 SS G_CDS: -4.25 Total: 21.60 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.74 -7.41 -39.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098137619.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.571 kcal (2) G-P(sol) polarization free energy of solvation -31.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds