Wall clock time and date at job start Tue Mar 31 2020 11:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35663 * 117.00258 * 2 1 4 4 C 1.39285 * 119.61872 * 180.02562 * 3 2 1 5 5 C 1.38335 * 119.30537 * 180.02562 * 4 3 2 6 6 C 1.38781 * 118.55858 * 359.97438 * 5 4 3 7 7 C 1.39124 * 119.18666 * 0.02562 * 6 5 4 8 8 C 1.48154 * 119.68731 * 179.97438 * 7 6 5 9 9 O 1.21516 * 119.99994 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99997 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00211 * 179.97438 * 10 8 7 12 12 H 1.09001 * 110.67969 * 32.01866 * 11 10 8 13 13 C 1.55472 * 110.75917 * 268.96405 * 11 10 8 14 14 C 1.55843 * 103.32733 * 241.51050 * 13 11 10 15 15 H 1.09003 * 116.12994 * 159.23577 * 14 13 11 16 16 C 1.56860 * 105.78191 * 288.56661 * 14 13 11 17 17 C 1.54853 * 103.35407 * 71.45036 * 16 14 13 18 18 C 1.55841 * 110.62653 * 155.00103 * 11 10 8 19 19 H 1.08998 * 115.56311 * 319.68327 * 18 11 10 20 20 N 1.50239 * 101.05193 * 33.02434 * 14 13 11 21 21 C 1.36936 * 130.84022 * 126.06502 * 20 14 13 22 22 H 1.08004 * 119.99830 * 189.78669 * 21 20 14 23 23 C 1.38808 * 120.00008 * 9.78414 * 21 20 14 24 24 N 1.31626 * 119.99681 * 201.20053 * 23 21 20 25 25 Si 1.86793 * 120.00055 * 21.19834 * 23 21 20 26 26 H 1.48500 * 109.47244 * 269.99901 * 25 23 21 27 27 H 1.48502 * 109.47169 * 149.99984 * 25 23 21 28 28 H 1.48500 * 109.47269 * 30.00143 * 25 23 21 29 29 N 1.31901 * 119.61781 * 0.25762 * 3 2 1 30 30 H 1.09004 * 109.46907 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47158 * 299.99701 * 1 2 3 32 32 H 1.09002 * 109.47172 * 59.99714 * 1 2 3 33 33 H 1.08001 * 120.35092 * 0.02562 * 4 3 2 34 34 H 1.08000 * 120.71960 * 179.97438 * 5 4 3 35 35 H 1.08002 * 120.40618 * 180.02562 * 6 5 4 36 36 H 0.96998 * 119.99961 * 0.02562 * 10 8 7 37 37 H 1.09001 * 110.61076 * 123.10076 * 13 11 10 38 38 H 1.08999 * 110.89697 * 0.05748 * 13 11 10 39 39 H 1.09001 * 110.43113 * 313.10936 * 16 14 13 40 40 H 1.08998 * 110.90696 * 190.02588 * 16 14 13 41 41 H 1.08996 * 110.62628 * 241.78625 * 17 16 14 42 42 H 1.08995 * 110.62388 * 118.76957 * 17 16 14 43 43 H 0.96994 * 119.99799 * 354.93794 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 3.4363 1.2723 -0.0005 5 6 4.0576 2.5083 0.0000 6 6 3.2666 3.6485 0.0005 7 6 1.8819 3.5136 0.0010 8 6 1.0268 4.7235 0.0022 9 8 1.5354 5.8270 0.0022 10 7 -0.3153 4.6001 0.0022 11 6 -1.1610 5.7964 0.0039 12 1 -0.6771 6.6105 -0.5358 13 6 -1.5003 6.2292 1.4580 14 6 -3.0536 6.1154 1.5134 15 1 -3.4934 6.0284 2.5070 16 6 -3.5995 7.2979 0.6392 17 6 -3.2540 6.8631 -0.8063 18 6 -2.5573 5.4825 -0.6128 19 1 -2.5497 4.8327 -1.4879 20 7 -3.2906 4.9558 0.5881 21 6 -3.9707 3.7826 0.7786 22 1 -3.9019 2.9933 0.0446 23 6 -4.7483 3.6078 1.9150 24 7 -5.0571 2.3944 2.3209 25 14 -5.3565 5.0946 2.8684 26 1 -4.3602 5.4573 3.9082 27 1 -6.6528 4.7707 3.5164 28 1 -5.5399 6.2378 1.9385 29 7 1.3192 2.3102 0.0052 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8900 33 1 4.0240 0.3662 -0.0014 34 1 5.1350 2.5842 0.0000 35 1 3.7203 4.6286 0.0005 36 1 -0.7214 3.7192 0.0018 37 1 -1.1841 7.2571 1.6361 38 1 -1.0400 5.5563 2.1814 39 1 -3.0883 8.2265 0.8933 40 1 -4.6773 7.4060 0.7605 41 1 -2.5717 7.5760 -1.2691 42 1 -4.1605 6.7556 -1.4019 43 1 -4.8042 1.6253 1.7867 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098137619.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:42 Heat of formation + Delta-G solvation = -2.339388 kcal Electronic energy + Delta-G solvation = -27190.218154 eV Core-core repulsion = 23429.656647 eV Total energy + Delta-G solvation = -3760.561507 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.00128 -41.25342 -40.02668 -38.64957 -35.51659 -34.69567 -33.64252 -31.98905 -31.32635 -30.65763 -29.81936 -28.37892 -25.93677 -25.33652 -23.97765 -23.13386 -21.89182 -21.59041 -20.74111 -19.53555 -19.31245 -18.81108 -17.81138 -17.18920 -17.06379 -16.95706 -16.93772 -16.19191 -15.79277 -15.35655 -15.31147 -15.26075 -15.07468 -14.53600 -14.31243 -14.19418 -13.45981 -13.29238 -13.25041 -13.16298 -12.92088 -12.78997 -12.57409 -12.31931 -12.27247 -12.01306 -11.69045 -11.46176 -11.33223 -11.23541 -11.08713 -11.05965 -10.73212 -10.66007 -10.10118 -9.66072 -9.22002 -8.55152 -5.34504 -0.44862 0.19744 1.37852 1.52271 1.63307 1.69718 1.98634 2.08101 2.56107 2.74723 2.92537 2.98528 3.22054 3.73986 3.80383 3.82966 3.89303 3.99567 4.04784 4.20676 4.22726 4.30657 4.33197 4.34077 4.42085 4.44285 4.54009 4.56819 4.70847 4.72570 4.78405 4.90277 5.03486 5.05749 5.10022 5.18051 5.30332 5.31715 5.39678 5.54708 5.57177 6.05016 6.08074 6.35586 6.63546 6.79571 7.05664 7.43556 8.28187 8.95688 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014293 B = 0.004628 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.487842 B = 6048.807148 C = 7416.121724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.312 6.312 3 C 0.294 3.706 4 C -0.157 4.157 5 C -0.033 4.033 6 C -0.146 4.146 7 C 0.090 3.910 8 C 0.565 3.435 9 O -0.561 6.561 10 N -0.691 5.691 11 C 0.136 3.864 12 H 0.106 0.894 13 C -0.128 4.128 14 C 0.102 3.898 15 H 0.077 0.923 16 C -0.133 4.133 17 C -0.118 4.118 18 C 0.127 3.873 19 H 0.090 0.910 20 N -0.627 5.627 21 C -0.282 4.282 22 H 0.048 0.952 23 C -0.082 4.082 24 N -0.968 5.968 25 Si 1.095 2.905 26 H -0.288 1.288 27 H -0.317 1.317 28 H -0.241 1.241 29 N -0.540 5.540 30 H 0.124 0.876 31 H 0.040 0.960 32 H 0.052 0.948 33 H 0.178 0.822 34 H 0.198 0.802 35 H 0.160 0.840 36 H 0.407 0.593 37 H 0.094 0.906 38 H 0.041 0.959 39 H 0.094 0.906 40 H 0.059 0.941 41 H 0.094 0.906 42 H 0.063 0.937 43 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.686 3.557 -6.976 19.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.219 6.219 3 C 0.113 3.887 4 C -0.177 4.177 5 C -0.057 4.057 6 C -0.167 4.167 7 C -0.045 4.045 8 C 0.351 3.649 9 O -0.440 6.440 10 N -0.338 5.338 11 C 0.030 3.970 12 H 0.123 0.877 13 C -0.169 4.169 14 C -0.003 4.003 15 H 0.094 0.906 16 C -0.172 4.172 17 C -0.157 4.157 18 C 0.020 3.980 19 H 0.108 0.892 20 N -0.351 5.351 21 C -0.411 4.411 22 H 0.066 0.934 23 C -0.275 4.275 24 N -0.614 5.614 25 Si 0.925 3.075 26 H -0.217 1.217 27 H -0.247 1.247 28 H -0.165 1.165 29 N -0.267 5.267 30 H 0.142 0.858 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.195 0.805 34 H 0.215 0.785 35 H 0.177 0.823 36 H 0.242 0.758 37 H 0.113 0.887 38 H 0.060 0.940 39 H 0.113 0.887 40 H 0.078 0.922 41 H 0.112 0.888 42 H 0.082 0.918 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 16.254 4.327 -5.651 17.745 hybrid contribution 0.513 -1.579 -1.090 1.986 sum 16.768 2.748 -6.741 18.280 Atomic orbital electron populations 1.22915 0.76356 1.04487 1.01546 1.86213 1.23456 1.24231 1.87965 1.20295 0.90787 0.84126 0.93534 1.21750 0.90624 1.01747 1.03579 1.21951 1.02781 0.89086 0.91913 1.22233 0.91930 1.02408 1.00172 1.20784 0.93236 0.89565 1.00952 1.18207 0.82492 0.87851 0.76384 1.90714 1.74309 1.26595 1.52395 1.45948 1.05345 1.11124 1.71399 1.22694 0.90718 0.86983 0.96628 0.87655 1.23357 0.95987 1.01362 0.96151 1.23639 0.94486 0.88125 0.94066 0.90557 1.23321 1.00877 0.97556 0.95403 1.22835 1.00514 0.95847 0.96502 1.23340 0.89851 0.94778 0.89995 0.89212 1.46952 1.61073 1.17041 1.10026 1.19870 1.23287 0.90367 1.07556 0.93394 1.26815 0.98412 1.03641 0.98628 1.71038 1.54877 0.97984 1.37476 0.83493 0.74590 0.74040 0.75387 1.21710 1.24672 1.16518 1.67054 1.42367 0.98904 1.18357 0.85815 0.94090 0.92917 0.80459 0.78542 0.82262 0.75768 0.88730 0.94029 0.88742 0.92199 0.88786 0.91829 0.94481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.12 10.38 113.37 1.18 2.30 16 2 O -0.31 -8.34 10.47 -89.79 -0.94 -9.28 16 3 C 0.29 7.85 7.49 84.93 0.64 8.49 16 4 C -0.16 -2.82 10.05 22.54 0.23 -2.60 16 5 C -0.03 -0.49 10.16 22.42 0.23 -0.26 16 6 C -0.15 -3.23 9.63 22.61 0.22 -3.01 16 7 C 0.09 2.71 6.75 41.84 0.28 2.99 16 8 C 0.56 19.34 7.81 86.88 0.68 20.01 16 9 O -0.56 -20.41 15.96 -3.76 -0.06 -20.47 16 10 N -0.69 -24.59 5.09 -436.47 -2.22 -26.81 16 11 C 0.14 4.60 2.84 46.82 0.13 4.74 16 12 H 0.11 3.26 7.26 -2.39 -0.02 3.25 16 13 C -0.13 -4.56 6.27 32.43 0.20 -4.36 16 14 C 0.10 4.06 3.64 46.60 0.17 4.23 16 15 H 0.08 3.31 3.40 -2.39 -0.01 3.30 16 16 C -0.13 -4.21 6.27 32.58 0.20 -4.00 16 17 C -0.12 -3.49 6.46 32.21 0.21 -3.28 16 18 C 0.13 4.59 5.01 46.23 0.23 4.82 16 19 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 20 N -0.63 -28.44 2.82 -613.31 -1.73 -30.17 16 21 C -0.28 -15.70 10.81 84.03 0.91 -14.80 16 22 H 0.05 2.88 8.06 -2.91 -0.02 2.86 16 23 C -0.08 -4.82 5.49 84.86 0.47 -4.36 16 24 N -0.97 -62.00 13.70 21.65 0.30 -61.70 16 25 Si 1.10 53.19 25.01 68.60 1.72 54.91 16 26 H -0.29 -13.43 6.60 99.48 0.66 -12.77 16 27 H -0.32 -16.05 7.11 99.48 0.71 -15.34 16 28 H -0.24 -10.21 4.91 99.48 0.49 -9.72 16 29 N -0.54 -16.84 8.39 -298.21 -2.50 -19.34 16 30 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.04 1.28 8.10 -2.38 -0.02 1.26 16 32 H 0.05 1.46 8.11 -2.39 -0.02 1.44 16 33 H 0.18 2.02 8.06 -2.91 -0.02 2.00 16 34 H 0.20 1.03 8.06 -2.91 -0.02 1.01 16 35 H 0.16 3.18 7.63 -2.91 -0.02 3.16 16 36 H 0.41 15.79 7.98 -92.71 -0.74 15.05 16 37 H 0.09 2.79 7.88 -2.39 -0.02 2.78 16 38 H 0.04 1.66 8.00 -2.39 -0.02 1.64 16 39 H 0.09 2.35 7.88 -2.39 -0.02 2.33 16 40 H 0.06 2.01 6.49 -2.39 -0.02 1.99 16 41 H 0.09 2.18 7.85 -2.39 -0.02 2.16 16 42 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.25 15.77 8.73 -92.71 -0.81 14.96 16 Total: -1.00 -73.44 347.03 0.53 -72.91 By element: Atomic # 1 Polarization: 29.03 SS G_CDS: 0.00 Total: 29.03 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: 5.97 Total: 10.92 kcal Atomic # 7 Polarization: -131.87 SS G_CDS: -6.15 Total: -138.02 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -1.00 Total: -29.74 kcal Atomic # 14 Polarization: 53.19 SS G_CDS: 1.72 Total: 54.91 kcal Total: -73.44 0.53 -72.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098137619.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.569 kcal (2) G-P(sol) polarization free energy of solvation -73.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds