Wall clock time and date at job start Tue Mar 31 2020 11:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46909 * 110.99621 * 2 1 4 4 C 1.46898 * 111.00441 * 123.95213 * 2 1 3 5 5 C 1.47203 * 109.46532 * 66.04822 * 4 2 1 6 6 C 3.42786 * 88.28137 * 165.66615 * 2 1 3 7 7 C 4.81123 * 84.59809 * 171.74969 * 2 1 3 8 8 N 1.46501 * 109.47131 * 208.50388 * 7 6 5 9 9 C 1.34776 * 119.99995 * 179.97438 * 8 7 6 10 10 O 1.21596 * 120.00375 * 0.02562 * 9 8 7 11 11 N 1.34781 * 120.00167 * 180.02562 * 9 8 7 12 12 C 1.40022 * 120.00176 * 175.49980 * 11 9 8 13 13 C 1.38912 * 120.00259 * 215.12813 * 12 11 9 14 14 C 1.37999 * 120.00243 * 180.02562 * 13 12 11 15 15 C 1.38905 * 120.00326 * 359.97438 * 14 13 12 16 16 O 1.35779 * 119.99953 * 180.02562 * 15 14 13 17 17 C 1.34812 * 117.00320 * 5.34545 * 16 15 14 18 18 H 1.08001 * 119.99835 * 354.96562 * 17 16 15 19 19 C 1.38630 * 120.00108 * 174.96458 * 17 16 15 20 20 N 1.31574 * 120.00225 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00104 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47089 * 90.00126 * 21 19 17 23 23 H 1.48495 * 109.47055 * 210.00290 * 21 19 17 24 24 H 1.48507 * 109.46941 * 329.99872 * 21 19 17 25 25 C 1.38897 * 119.99836 * 0.27797 * 15 14 13 26 26 C 1.38013 * 120.00318 * 359.44978 * 25 15 14 27 27 H 1.09004 * 109.47174 * 296.04017 * 1 2 3 28 28 H 1.08999 * 109.47585 * 56.04792 * 1 2 3 29 29 H 1.09009 * 109.47078 * 176.04553 * 1 2 3 30 30 H 1.09000 * 109.46360 * 183.95613 * 3 2 1 31 31 H 1.08998 * 109.46856 * 303.95088 * 3 2 1 32 32 H 1.08995 * 109.46922 * 63.95813 * 3 2 1 33 33 H 1.09002 * 109.46977 * 306.04919 * 4 2 1 34 34 H 1.08996 * 109.47207 * 186.04682 * 4 2 1 35 35 H 1.08994 * 109.47338 * 88.50227 * 7 6 5 36 36 H 1.09009 * 109.47206 * 328.50424 * 7 6 5 37 37 H 0.96993 * 120.00254 * 0.02562 * 8 7 6 38 38 H 0.96997 * 119.99675 * 355.49071 * 11 9 8 39 39 H 1.08007 * 119.99575 * 359.97438 * 13 12 11 40 40 H 1.07999 * 120.00161 * 179.97438 * 14 13 12 41 41 H 0.97000 * 120.00644 * 179.97438 * 20 19 17 42 42 H 1.08006 * 120.00323 * 179.69943 * 25 15 14 43 43 H 1.07997 * 120.00593 * 180.27151 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.6453 -2.1866 0.9766 6 6 1.3661 -3.3197 0.8483 7 6 1.0160 -4.7403 0.6873 8 7 2.0611 -5.5720 1.2891 9 6 1.9527 -6.9151 1.2616 10 8 0.9878 -7.4366 0.7368 11 7 2.9140 -7.6804 1.8157 12 6 2.7570 -9.0706 1.8711 13 6 3.2447 -9.7819 2.9601 14 6 3.0905 -11.1522 3.0144 15 6 2.4470 -11.8203 1.9805 16 8 2.2948 -13.1684 2.0343 17 6 2.6905 -13.7844 3.1663 18 1 3.1808 -13.2195 3.9453 19 6 2.4682 -15.1429 3.3303 20 7 2.8540 -15.7440 4.4353 21 14 1.6208 -16.1201 1.9825 22 1 2.6394 -16.6529 1.0424 23 1 0.8677 -17.2478 2.5876 24 1 0.6817 -15.2363 1.2461 25 6 1.9639 -11.1098 0.8891 26 6 2.1131 -9.7387 0.8373 27 1 -0.3634 0.4512 0.9234 28 1 -0.3634 0.5739 -0.8524 29 1 -0.3634 -1.0253 -0.0709 30 1 3.0827 1.3433 -0.0709 31 1 1.5897 1.9163 -0.8525 32 1 1.7043 1.8724 0.9233 33 1 1.5611 -0.3872 2.0628 34 1 3.0797 -0.6610 1.1755 35 1 0.9304 -4.9755 -0.3735 36 1 0.0646 -4.9383 1.1813 37 1 2.8307 -5.1561 1.7081 38 1 3.7146 -7.2679 2.1759 39 1 3.7455 -9.2625 3.7638 40 1 3.4701 -11.7052 3.8609 41 1 2.6981 -16.6944 4.5503 42 1 1.4678 -11.6298 0.0828 43 1 1.7336 -9.1858 -0.0092 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119674114.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:44 Heat of formation + Delta-G solvation = 42.260532 kcal Electronic energy + Delta-G solvation = -23985.854183 eV Core-core repulsion = 20227.226674 eV Total energy + Delta-G solvation = -3758.627509 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.39311 -38.92716 -38.16928 -36.92969 -35.45786 -34.04857 -33.02790 -32.27689 -30.26060 -29.38048 -28.13264 -27.89735 -26.12817 -25.04010 -22.66251 -22.31763 -21.70223 -20.56639 -18.93973 -17.76032 -17.69039 -17.21866 -16.63101 -16.07472 -16.01511 -15.69755 -15.34848 -14.98973 -14.71079 -14.19384 -14.06434 -13.81679 -13.75041 -13.59641 -13.35926 -13.17190 -12.74933 -12.69548 -12.49378 -12.30034 -12.24825 -12.19353 -11.78492 -11.60849 -10.94606 -10.82493 -10.68339 -10.43980 -10.17380 -9.98005 -9.65500 -9.28270 -9.23301 -8.98606 -8.73249 -8.24859 -7.00935 -6.38593 -4.04387 1.82436 2.10185 2.18887 2.24758 2.86466 3.22341 3.28349 3.29270 3.44679 3.52902 3.73388 4.24050 4.27410 4.53411 4.57109 4.65293 4.81073 4.85097 4.92107 5.03463 5.08695 5.14442 5.15661 5.30269 5.31089 5.36394 5.43171 5.52526 5.75640 6.07669 6.13494 6.16199 6.23816 6.32621 6.37275 6.64888 6.75322 6.81883 7.12623 7.14931 7.18532 7.27026 7.63361 7.81645 7.96835 8.06323 8.58935 8.97016 9.60082 10.69044 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.049755 B = 0.001656 C = 0.001622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.626376 B =16904.680252 C =17254.248034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.546 5.546 3 C 0.024 3.976 4 C 0.165 3.835 5 C -0.151 4.151 6 C -0.184 4.184 7 C 0.256 3.744 8 N -0.747 5.747 9 C 0.703 3.297 10 O -0.574 6.574 11 N -0.674 5.674 12 C 0.062 3.938 13 C -0.093 4.093 14 C -0.206 4.206 15 C 0.151 3.849 16 O -0.218 6.218 17 C -0.388 4.388 18 H 0.106 0.894 19 C 0.063 3.937 20 N -0.881 5.881 21 Si 0.905 3.095 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.259 1.259 25 C -0.177 4.177 26 C -0.070 4.070 27 H 0.029 0.971 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.029 0.971 33 H 0.060 0.940 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.398 0.602 38 H 0.399 0.601 39 H 0.113 0.887 40 H 0.137 0.863 41 H 0.279 0.721 42 H 0.121 0.879 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.049 31.356 -5.928 31.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.270 5.270 3 C -0.124 4.124 4 C 0.039 3.961 5 C -0.153 4.153 6 C -0.186 4.186 7 C 0.133 3.867 8 N -0.404 5.404 9 C 0.403 3.597 10 O -0.450 6.450 11 N -0.321 5.321 12 C -0.031 4.031 13 C -0.114 4.114 14 C -0.226 4.226 15 C 0.099 3.901 16 O -0.123 6.123 17 C -0.464 4.464 18 H 0.123 0.877 19 C -0.140 4.140 20 N -0.519 5.519 21 Si 0.730 3.270 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.183 1.183 25 C -0.197 4.197 26 C -0.090 4.090 27 H 0.047 0.953 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.047 0.953 33 H 0.078 0.922 34 H 0.119 0.881 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.232 0.768 38 H 0.234 0.766 39 H 0.131 0.869 40 H 0.155 0.845 41 H 0.089 0.911 42 H 0.139 0.861 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.896 30.303 -6.885 31.088 hybrid contribution 0.251 0.387 0.899 1.010 sum -0.645 30.690 -5.986 31.275 Atomic orbital electron populations 1.22455 0.86630 1.02862 1.00741 1.61945 1.08753 1.14083 1.42232 1.22416 1.01064 0.87949 1.00995 1.19043 1.00761 0.84007 0.92331 1.21997 0.98641 0.93474 1.01181 1.22154 1.01903 0.93979 1.00516 1.17845 0.90635 0.78649 0.99574 1.45042 1.26563 1.04444 1.64351 1.15864 0.83102 0.80771 0.79946 1.90944 1.32558 1.72003 1.49531 1.42286 1.20966 1.05453 1.63417 1.17096 1.08831 0.80263 0.96938 1.20509 1.01454 0.93976 0.95458 1.21070 1.06211 0.93723 1.01573 1.19156 0.93472 0.83789 0.93702 1.83583 1.74378 1.15144 1.39169 1.20755 1.38564 0.93086 0.93997 0.87655 1.24455 0.96605 0.95800 0.97136 1.69653 1.45633 1.11627 1.25009 0.86183 0.80224 0.79257 0.81286 1.19910 1.20870 1.18272 1.20153 1.07241 0.93026 0.99299 1.20785 0.97997 0.92779 0.97425 0.95288 0.90997 0.91008 0.90934 0.90831 0.95255 0.92178 0.88140 0.88939 0.89089 0.76845 0.76645 0.86940 0.84509 0.91108 0.86140 0.84920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.36 60.06 0.56 0.69 16 2 N -0.55 -3.51 5.00 -254.81 -1.27 -4.78 16 3 C 0.02 0.10 9.57 60.07 0.57 0.67 16 4 C 0.17 0.99 5.46 -6.61 -0.04 0.95 16 5 C -0.15 -1.25 12.44 -37.12 -0.46 -1.71 16 6 C -0.18 -1.64 13.46 -37.12 -0.50 -2.14 16 7 C 0.26 2.41 6.15 -6.83 -0.04 2.37 16 8 N -0.75 -7.44 5.54 -68.12 -0.38 -7.81 16 9 C 0.70 9.84 8.41 -86.91 -0.73 9.11 16 10 O -0.57 -10.33 13.78 5.28 0.07 -10.26 16 11 N -0.67 -8.99 5.35 -14.18 -0.08 -9.06 16 12 C 0.06 1.07 6.30 -83.62 -0.53 0.54 16 13 C -0.09 -1.66 9.96 -39.42 -0.39 -2.05 16 14 C -0.21 -4.40 9.16 -39.42 -0.36 -4.76 16 15 C 0.15 3.54 6.65 -39.09 -0.26 3.28 16 16 O -0.22 -5.80 8.58 0.01 0.00 -5.80 16 17 C -0.39 -10.97 9.94 30.88 0.31 -10.66 16 18 H 0.11 3.01 5.43 -52.49 -0.28 2.72 16 19 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 20 N -0.88 -25.50 13.96 55.48 0.77 -24.73 16 21 Si 0.90 21.90 28.62 -169.99 -4.86 17.04 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.26 -6.32 7.11 56.52 0.40 -5.92 16 25 C -0.18 -3.71 9.98 -39.42 -0.39 -4.10 16 26 C -0.07 -1.33 8.69 -39.41 -0.34 -1.68 16 27 H 0.03 0.15 8.14 -51.93 -0.42 -0.28 16 28 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 29 H 0.07 0.49 7.29 -51.92 -0.38 0.11 16 30 H 0.07 0.25 8.12 -51.93 -0.42 -0.18 16 31 H 0.07 0.27 8.12 -51.93 -0.42 -0.16 16 32 H 0.03 0.10 8.14 -51.93 -0.42 -0.32 16 33 H 0.06 0.30 8.12 -51.93 -0.42 -0.12 16 34 H 0.10 0.46 8.06 -51.93 -0.42 0.04 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.09 0.88 8.14 -51.92 -0.42 0.45 16 37 H 0.40 2.92 8.47 -40.82 -0.35 2.57 16 38 H 0.40 3.81 8.84 -40.82 -0.36 3.45 16 39 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 40 H 0.14 3.03 5.63 -52.49 -0.30 2.73 16 41 H 0.28 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.12 2.37 8.06 -52.48 -0.42 1.95 16 43 H 0.13 2.50 6.22 -52.49 -0.33 2.17 16 LS Contribution 372.58 15.07 5.61 5.61 Total: -1.00 -33.33 372.58 -8.60 -41.93 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -5.77 Total: 5.67 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -2.70 Total: -7.81 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: -0.95 Total: -46.39 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: 0.07 Total: -16.06 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.86 Total: 17.04 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.33 -8.60 -41.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119674114.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.186 kcal (2) G-P(sol) polarization free energy of solvation -33.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds