Wall clock time and date at job start Tue Mar 31 2020 11:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46909 * 110.99621 * 2 1 4 4 C 1.46898 * 111.00441 * 123.95213 * 2 1 3 5 5 C 1.47203 * 109.46532 * 66.04822 * 4 2 1 6 6 C 3.42786 * 88.28137 * 165.66615 * 2 1 3 7 7 C 4.81123 * 84.59809 * 171.74969 * 2 1 3 8 8 N 1.46501 * 109.47131 * 208.50388 * 7 6 5 9 9 C 1.34776 * 119.99995 * 179.97438 * 8 7 6 10 10 O 1.21596 * 120.00375 * 0.02562 * 9 8 7 11 11 N 1.34781 * 120.00167 * 180.02562 * 9 8 7 12 12 C 1.40022 * 120.00176 * 175.49980 * 11 9 8 13 13 C 1.38912 * 120.00259 * 215.12813 * 12 11 9 14 14 C 1.37999 * 120.00243 * 180.02562 * 13 12 11 15 15 C 1.38905 * 120.00326 * 359.97438 * 14 13 12 16 16 O 1.35779 * 119.99953 * 180.02562 * 15 14 13 17 17 C 1.34812 * 117.00320 * 5.34545 * 16 15 14 18 18 H 1.08001 * 119.99835 * 354.96562 * 17 16 15 19 19 C 1.38630 * 120.00108 * 174.96458 * 17 16 15 20 20 N 1.31574 * 120.00225 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00104 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47089 * 90.00126 * 21 19 17 23 23 H 1.48495 * 109.47055 * 210.00290 * 21 19 17 24 24 H 1.48507 * 109.46941 * 329.99872 * 21 19 17 25 25 C 1.38897 * 119.99836 * 0.27797 * 15 14 13 26 26 C 1.38013 * 120.00318 * 359.44978 * 25 15 14 27 27 H 1.09004 * 109.47174 * 296.04017 * 1 2 3 28 28 H 1.08999 * 109.47585 * 56.04792 * 1 2 3 29 29 H 1.09009 * 109.47078 * 176.04553 * 1 2 3 30 30 H 1.09000 * 109.46360 * 183.95613 * 3 2 1 31 31 H 1.08998 * 109.46856 * 303.95088 * 3 2 1 32 32 H 1.08995 * 109.46922 * 63.95813 * 3 2 1 33 33 H 1.09002 * 109.46977 * 306.04919 * 4 2 1 34 34 H 1.08996 * 109.47207 * 186.04682 * 4 2 1 35 35 H 1.08994 * 109.47338 * 88.50227 * 7 6 5 36 36 H 1.09009 * 109.47206 * 328.50424 * 7 6 5 37 37 H 0.96993 * 120.00254 * 0.02562 * 8 7 6 38 38 H 0.96997 * 119.99675 * 355.49071 * 11 9 8 39 39 H 1.08007 * 119.99575 * 359.97438 * 13 12 11 40 40 H 1.07999 * 120.00161 * 179.97438 * 14 13 12 41 41 H 0.97000 * 120.00644 * 179.97438 * 20 19 17 42 42 H 1.08006 * 120.00323 * 179.69943 * 25 15 14 43 43 H 1.07997 * 120.00593 * 180.27151 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.6453 -2.1866 0.9766 6 6 1.3661 -3.3197 0.8483 7 6 1.0160 -4.7403 0.6873 8 7 2.0611 -5.5720 1.2891 9 6 1.9527 -6.9151 1.2616 10 8 0.9878 -7.4366 0.7368 11 7 2.9140 -7.6804 1.8157 12 6 2.7570 -9.0706 1.8711 13 6 3.2447 -9.7819 2.9601 14 6 3.0905 -11.1522 3.0144 15 6 2.4470 -11.8203 1.9805 16 8 2.2948 -13.1684 2.0343 17 6 2.6905 -13.7844 3.1663 18 1 3.1808 -13.2195 3.9453 19 6 2.4682 -15.1429 3.3303 20 7 2.8540 -15.7440 4.4353 21 14 1.6208 -16.1201 1.9825 22 1 2.6394 -16.6529 1.0424 23 1 0.8677 -17.2478 2.5876 24 1 0.6817 -15.2363 1.2461 25 6 1.9639 -11.1098 0.8891 26 6 2.1131 -9.7387 0.8373 27 1 -0.3634 0.4512 0.9234 28 1 -0.3634 0.5739 -0.8524 29 1 -0.3634 -1.0253 -0.0709 30 1 3.0827 1.3433 -0.0709 31 1 1.5897 1.9163 -0.8525 32 1 1.7043 1.8724 0.9233 33 1 1.5611 -0.3872 2.0628 34 1 3.0797 -0.6610 1.1755 35 1 0.9304 -4.9755 -0.3735 36 1 0.0646 -4.9383 1.1813 37 1 2.8307 -5.1561 1.7081 38 1 3.7146 -7.2679 2.1759 39 1 3.7455 -9.2625 3.7638 40 1 3.4701 -11.7052 3.8609 41 1 2.6981 -16.6944 4.5503 42 1 1.4678 -11.6298 0.0828 43 1 1.7336 -9.1858 -0.0092 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119674114.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:43 Heat of formation + Delta-G solvation = 18.441452 kcal Electronic energy + Delta-G solvation = -23986.887056 eV Core-core repulsion = 20227.226674 eV Total energy + Delta-G solvation = -3759.660382 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.66215 -40.57679 -38.63653 -38.43813 -36.45543 -35.43363 -34.35521 -33.74289 -31.87154 -30.32668 -29.11707 -28.48769 -27.31441 -26.57085 -23.94010 -23.24169 -22.95287 -21.90150 -20.23032 -19.43910 -19.16786 -18.62246 -17.56838 -16.85054 -16.60302 -16.53566 -16.36981 -16.29709 -15.94870 -15.64879 -15.60371 -15.36448 -14.86129 -14.76874 -14.44261 -14.15353 -14.03605 -13.90443 -13.65003 -13.40006 -13.24978 -13.06273 -12.87816 -12.74958 -12.57914 -12.49709 -11.98976 -11.58236 -11.43431 -11.24171 -11.09512 -10.95063 -10.64217 -10.12625 -9.83979 -9.39964 -8.62589 -8.46961 -6.17797 0.51636 0.55665 1.07541 1.33757 1.37291 1.53978 1.59638 1.93675 2.07087 2.30726 2.79772 2.94218 3.06353 3.20364 3.22186 3.32713 4.05683 4.15001 4.19721 4.23792 4.40571 4.43735 4.49341 4.50244 4.56228 4.59954 4.67046 4.72520 4.75579 4.77561 4.98995 5.05367 5.08728 5.17596 5.29540 5.39012 5.52257 5.58658 5.79092 5.90488 5.92035 5.98252 6.00312 6.23740 6.49344 6.87920 6.97658 7.47304 7.62912 8.64286 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.049755 B = 0.001656 C = 0.001622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.626376 B =16904.680252 C =17254.248034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.565 5.565 3 C 0.024 3.976 4 C 0.161 3.839 5 C -0.141 4.141 6 C -0.206 4.206 7 C 0.259 3.741 8 N -0.726 5.726 9 C 0.702 3.298 10 O -0.614 6.614 11 N -0.662 5.662 12 C 0.090 3.910 13 C -0.085 4.085 14 C -0.213 4.213 15 C 0.112 3.888 16 O -0.246 6.246 17 C -0.397 4.397 18 H 0.087 0.913 19 C 0.012 3.988 20 N -0.922 5.922 21 Si 0.966 3.034 22 H -0.265 1.265 23 H -0.269 1.269 24 H -0.266 1.266 25 C -0.176 4.176 26 C -0.076 4.076 27 H 0.035 0.965 28 H 0.078 0.922 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.037 0.963 33 H 0.073 0.927 34 H 0.117 0.883 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.414 0.586 38 H 0.422 0.578 39 H 0.154 0.846 40 H 0.122 0.878 41 H 0.284 0.716 42 H 0.127 0.873 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.355 34.591 -6.534 35.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.289 5.289 3 C -0.124 4.124 4 C 0.034 3.966 5 C -0.143 4.143 6 C -0.208 4.208 7 C 0.137 3.863 8 N -0.383 5.383 9 C 0.403 3.597 10 O -0.493 6.493 11 N -0.312 5.312 12 C -0.005 4.005 13 C -0.105 4.105 14 C -0.233 4.233 15 C 0.063 3.937 16 O -0.153 6.153 17 C -0.473 4.473 18 H 0.104 0.896 19 C -0.187 4.187 20 N -0.563 5.563 21 Si 0.789 3.211 22 H -0.190 1.190 23 H -0.193 1.193 24 H -0.190 1.190 25 C -0.196 4.196 26 C -0.096 4.096 27 H 0.054 0.946 28 H 0.096 0.904 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.056 0.944 33 H 0.091 0.909 34 H 0.135 0.865 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.251 0.749 38 H 0.261 0.739 39 H 0.171 0.829 40 H 0.140 0.860 41 H 0.093 0.907 42 H 0.145 0.855 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.445 33.649 -7.483 34.474 hybrid contribution 0.159 -0.147 1.038 1.060 sum -0.287 33.502 -6.445 34.117 Atomic orbital electron populations 1.22438 0.86693 1.02092 1.01426 1.61946 1.08935 1.15422 1.42598 1.22459 1.01490 0.86827 1.01585 1.19247 1.01864 0.82657 0.92802 1.22600 0.97548 0.94074 1.00106 1.22035 1.03084 0.94048 1.01638 1.17780 0.90244 0.78975 0.99340 1.44847 1.27108 1.02982 1.63344 1.15967 0.82513 0.81791 0.79438 1.90931 1.34162 1.73045 1.51190 1.42089 1.22012 1.03748 1.63316 1.17171 1.05643 0.82145 0.95492 1.20773 1.00797 0.92480 0.96455 1.21125 1.06132 0.95356 1.00672 1.19600 0.95479 0.83160 0.95504 1.83528 1.76425 1.16805 1.38578 1.20741 1.38654 0.93535 0.94394 0.89577 1.25206 0.97466 0.96688 0.99292 1.69726 1.47640 1.12220 1.26713 0.85278 0.79235 0.77938 0.78674 1.19037 1.19332 1.19034 1.20324 1.06721 0.93813 0.98708 1.20946 0.98284 0.92046 0.98318 0.94611 0.90355 0.92480 0.90169 0.90523 0.94414 0.90904 0.86478 0.89185 0.89392 0.74936 0.73923 0.82864 0.86041 0.90657 0.85526 0.84249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.36 127.69 1.20 1.41 16 2 N -0.56 -6.06 5.00 -960.08 -4.80 -10.86 16 3 C 0.02 0.14 9.57 127.69 1.22 1.36 16 4 C 0.16 1.51 5.46 84.50 0.46 1.97 16 5 C -0.14 -2.04 12.44 31.13 0.39 -1.65 16 6 C -0.21 -3.28 13.46 31.12 0.42 -2.86 16 7 C 0.26 4.44 6.15 84.57 0.52 4.96 16 8 N -0.73 -12.43 5.54 -487.67 -2.70 -15.13 16 9 C 0.70 17.75 8.41 179.05 1.51 19.25 16 10 O -0.61 -20.98 13.78 -4.02 -0.06 -21.04 16 11 N -0.66 -15.32 5.35 -317.03 -1.69 -17.01 16 12 C 0.09 2.88 6.30 38.16 0.24 3.12 16 13 C -0.08 -2.80 9.96 22.37 0.22 -2.58 16 14 C -0.21 -9.14 9.16 22.37 0.20 -8.93 16 15 C 0.11 5.34 6.65 22.59 0.15 5.49 16 16 O -0.25 -13.54 8.58 -22.87 -0.20 -13.74 16 17 C -0.40 -23.36 9.94 67.91 0.68 -22.68 16 18 H 0.09 5.21 5.43 -2.91 -0.02 5.20 16 19 C 0.01 0.69 5.49 84.82 0.47 1.16 16 20 N -0.92 -55.02 13.96 21.61 0.30 -54.71 16 21 Si 0.97 46.10 28.62 68.60 1.96 48.06 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 23 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 24 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16 25 C -0.18 -7.34 9.98 22.37 0.22 -7.11 16 26 C -0.08 -2.78 8.69 22.38 0.19 -2.59 16 27 H 0.04 0.30 8.14 -2.38 -0.02 0.28 16 28 H 0.08 0.66 8.12 -2.39 -0.02 0.64 16 29 H 0.06 0.73 7.29 -2.38 -0.02 0.72 16 30 H 0.08 0.34 8.12 -2.39 -0.02 0.32 16 31 H 0.08 0.40 8.12 -2.39 -0.02 0.38 16 32 H 0.04 0.16 8.14 -2.39 -0.02 0.14 16 33 H 0.07 0.51 8.12 -2.39 -0.02 0.50 16 34 H 0.12 0.71 8.06 -2.39 -0.02 0.69 16 35 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.09 1.58 8.14 -2.38 -0.02 1.57 16 37 H 0.41 4.60 8.47 -92.71 -0.79 3.82 16 38 H 0.42 6.15 8.84 -92.71 -0.82 5.33 16 39 H 0.15 3.82 8.06 -2.91 -0.02 3.79 16 40 H 0.12 5.58 5.63 -2.91 -0.02 5.56 16 41 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 42 H 0.13 5.00 8.06 -2.91 -0.02 4.98 16 43 H 0.14 5.02 6.22 -2.91 -0.02 5.00 16 Total: -1.00 -74.03 372.58 0.36 -73.67 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: -0.54 Total: 20.45 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: 8.09 Total: -9.69 kcal Atomic # 7 Polarization: -88.82 SS G_CDS: -8.89 Total: -97.71 kcal Atomic # 8 Polarization: -34.53 SS G_CDS: -0.25 Total: -34.78 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 1.96 Total: 48.06 kcal Total: -74.03 0.36 -73.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119674114.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.112 kcal (2) G-P(sol) polarization free energy of solvation -74.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds