Wall clock time and date at job start Tue Mar 31 2020 11:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21274 * 119.99954 * 2 1 4 4 N 1.34772 * 119.99975 * 180.02562 * 2 1 3 5 5 C 1.39429 * 120.00079 * 185.08514 * 4 2 1 6 6 C 1.39007 * 119.63601 * 174.92721 * 5 4 2 7 7 C 1.39557 * 118.93566 * 179.72737 * 6 5 4 8 8 C 1.48159 * 120.88649 * 180.27073 * 7 6 5 9 9 O 1.21511 * 120.00522 * 0.02562 * 8 7 6 10 10 N 1.34784 * 119.99659 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99473 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.41530 * 324.85503 * 11 10 8 13 13 C 1.52950 * 109.41678 * 84.65306 * 11 10 8 14 14 C 1.53233 * 109.40808 * 183.70333 * 13 11 10 15 15 C 1.51271 * 108.53378 * 305.36891 * 14 13 11 16 16 C 1.37876 * 120.84683 * 231.32662 * 15 14 13 17 17 N 1.31520 * 119.99808 * 180.02562 * 16 15 14 18 18 Si 1.86791 * 120.00219 * 0.02562 * 16 15 14 19 19 H 1.48504 * 109.47306 * 90.00236 * 18 16 15 20 20 H 1.48506 * 109.47208 * 210.00290 * 18 16 15 21 21 H 1.48496 * 109.47142 * 329.99898 * 18 16 15 22 22 C 1.51268 * 118.29935 * 51.34417 * 15 14 13 23 23 C 1.52965 * 109.41185 * 205.00215 * 11 10 8 24 24 C 1.39984 * 118.22620 * 0.24992 * 7 6 5 25 25 C 1.38003 * 119.15365 * 359.97438 * 24 7 6 26 26 N 1.31879 * 120.99424 * 0.02562 * 25 24 7 27 27 H 1.08998 * 109.47426 * 269.99484 * 1 2 3 28 28 H 1.09002 * 109.47016 * 30.00353 * 1 2 3 29 29 H 1.09002 * 109.46556 * 149.99879 * 1 2 3 30 30 H 0.97002 * 120.00709 * 5.08137 * 4 2 1 31 31 H 1.08002 * 120.53687 * 359.97438 * 6 5 4 32 32 H 0.96993 * 119.99919 * 0.02562 * 10 8 7 33 33 H 1.09006 * 109.47952 * 303.67929 * 13 11 10 34 34 H 1.08997 * 109.48672 * 63.72013 * 13 11 10 35 35 H 1.09002 * 109.62831 * 185.65362 * 14 13 11 36 36 H 1.09000 * 109.62430 * 65.08243 * 14 13 11 37 37 H 0.96997 * 120.00218 * 179.97438 * 17 16 15 38 38 H 1.09001 * 109.62380 * 188.93679 * 22 15 14 39 39 H 1.09004 * 109.62440 * 68.37029 * 22 15 14 40 40 H 1.09003 * 109.48108 * 296.28108 * 23 11 10 41 41 H 1.09003 * 109.48428 * 56.29875 * 23 11 10 42 42 H 1.08001 * 120.42281 * 179.97438 * 24 7 6 43 43 H 1.07995 * 119.50251 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5711 -1.1696 0.1065 6 6 4.2502 -2.3779 0.2118 7 6 5.6421 -2.3636 0.3124 8 6 6.4099 -3.6261 0.4206 9 8 5.8281 -4.6928 0.4221 10 7 7.7538 -3.5913 0.5163 11 6 8.5130 -4.8398 0.6228 12 1 7.9417 -5.5627 1.2052 13 6 8.7654 -5.4023 -0.7769 14 6 9.4781 -6.7539 -0.6616 15 6 10.7278 -6.5690 0.1705 16 6 11.9518 -7.0122 -0.2840 17 7 13.0276 -6.8433 0.4534 18 14 12.0820 -7.8527 -1.9471 19 1 12.3396 -6.8348 -2.9973 20 1 13.1991 -8.8309 -1.9213 21 1 10.8111 -8.5606 -2.2449 22 6 10.6002 -5.8858 1.5140 23 6 9.8468 -4.5658 1.3198 24 6 6.2935 -1.1245 0.3079 25 6 5.5432 0.0291 0.2045 26 7 4.2287 -0.0218 0.1110 27 1 -0.3634 -0.0001 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3632 -0.8900 -0.5139 30 1 1.6988 -2.0056 -0.0753 31 1 3.7098 -3.3130 0.2117 32 1 8.2183 -2.7398 0.5148 33 1 7.8141 -5.5358 -1.2920 34 1 9.3899 -4.7089 -1.3403 35 1 9.7493 -7.1107 -1.6552 36 1 8.8194 -7.4750 -0.1777 37 1 13.8886 -7.1554 0.1339 38 1 11.5924 -5.6850 1.9183 39 1 10.0454 -6.5266 2.1994 40 1 10.4456 -3.8921 0.7068 41 1 9.6620 -4.1062 2.2907 42 1 7.3695 -1.0721 0.3843 43 1 6.0399 0.9880 0.2008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147829403.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:00 Heat of formation + Delta-G solvation = -36.356599 kcal Electronic energy + Delta-G solvation = -25633.460299 eV Core-core repulsion = 21871.423695 eV Total energy + Delta-G solvation = -3762.036604 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.16448 -39.86381 -38.81891 -36.81030 -35.27268 -33.89126 -32.79259 -31.56051 -31.19317 -29.72980 -29.26422 -27.46247 -24.97067 -23.54361 -22.50415 -21.61393 -21.23276 -20.08830 -19.61670 -18.57233 -17.42755 -16.95940 -16.24358 -16.11653 -15.90668 -15.49601 -15.14071 -14.86103 -14.56087 -14.44554 -14.05800 -13.98763 -13.75852 -13.23580 -13.07118 -12.81362 -12.63147 -12.32768 -12.26110 -12.08524 -11.74639 -11.11011 -11.07593 -10.87133 -10.77873 -10.60181 -10.26218 -10.04363 -10.03181 -9.95315 -9.66494 -9.36337 -9.07057 -8.92724 -8.61625 -8.50706 -8.41020 -6.14403 -4.05251 0.60365 0.79148 2.28368 2.46493 3.00453 3.23229 3.29721 3.34016 3.36342 3.75487 4.04204 4.35556 4.46682 4.54296 4.65802 4.73593 4.78101 4.87954 4.93320 5.13671 5.34770 5.38200 5.50960 5.66560 5.78930 5.80236 5.89507 6.12194 6.35683 6.40282 6.42080 6.64444 6.67067 6.79314 6.82983 6.90018 7.04261 7.15844 7.38921 7.60117 7.62128 7.64898 7.68372 7.81780 7.93725 8.32995 8.34130 8.91901 9.50697 10.95032 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.033369 B = 0.002378 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.904743 B =11770.947499 C =12043.062933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.500 3.500 3 O -0.479 6.479 4 N -0.662 5.662 5 C 0.352 3.648 6 C -0.151 4.151 7 C -0.053 4.053 8 C 0.551 3.449 9 O -0.532 6.532 10 N -0.712 5.712 11 C 0.153 3.847 12 H 0.081 0.919 13 C -0.114 4.114 14 C -0.013 4.013 15 C -0.490 4.490 16 C 0.076 3.924 17 N -0.889 5.889 18 Si 0.888 3.112 19 H -0.278 1.278 20 H -0.290 1.290 21 H -0.267 1.267 22 C 0.013 3.987 23 C -0.115 4.115 24 C -0.173 4.173 25 C 0.129 3.871 26 N -0.467 5.467 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.419 0.581 31 H 0.149 0.851 32 H 0.395 0.605 33 H 0.037 0.963 34 H 0.052 0.948 35 H 0.032 0.968 36 H 0.020 0.980 37 H 0.264 0.736 38 H 0.062 0.938 39 H 0.007 0.993 40 H 0.055 0.945 41 H 0.037 0.963 42 H 0.142 0.858 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.932 12.546 -0.480 23.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.287 3.713 3 O -0.348 6.348 4 N -0.310 5.310 5 C 0.121 3.879 6 C -0.175 4.175 7 C -0.064 4.064 8 C 0.336 3.664 9 O -0.410 6.410 10 N -0.361 5.361 11 C 0.051 3.949 12 H 0.099 0.901 13 C -0.153 4.153 14 C -0.051 4.051 15 C -0.509 4.509 16 C -0.127 4.127 17 N -0.527 5.527 18 Si 0.716 3.284 19 H -0.204 1.204 20 H -0.216 1.216 21 H -0.192 1.192 22 C -0.025 4.025 23 C -0.153 4.153 24 C -0.195 4.195 25 C -0.028 4.028 26 N -0.182 5.182 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.101 0.899 30 H 0.256 0.744 31 H 0.166 0.834 32 H 0.230 0.770 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.050 0.950 36 H 0.038 0.962 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.025 0.975 40 H 0.074 0.926 41 H 0.055 0.945 42 H 0.160 0.840 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -20.264 13.312 -0.514 24.251 hybrid contribution 0.661 -1.223 -0.924 1.670 sum -19.602 12.089 -1.439 23.075 Atomic orbital electron populations 1.21907 0.90647 1.05278 1.05155 1.21106 0.90710 0.83279 0.76252 1.90841 1.70021 1.30383 1.43528 1.43749 1.03863 1.11035 1.72396 1.18352 0.84861 0.89428 0.95230 1.21561 0.94002 0.98087 1.03851 1.20299 0.93610 0.94126 0.98405 1.18111 0.82761 0.87960 0.77531 1.90770 1.69672 1.30664 1.49861 1.46366 1.05769 1.11296 1.72670 1.21151 0.92165 0.83520 0.98062 0.90115 1.21923 0.98475 1.00012 0.94903 1.19719 0.96134 0.92320 0.96963 1.20035 0.90977 1.37427 1.02452 1.24843 0.95266 0.95332 0.97223 1.69829 0.99046 1.46268 1.37539 0.86656 0.77487 0.79819 0.84394 1.20435 1.21620 1.19164 1.19338 0.96960 0.90256 0.95930 1.21948 0.94286 1.01828 0.97254 1.22312 1.01803 0.92469 1.02949 1.22636 0.88097 0.98536 0.93573 1.67508 1.09961 1.26897 1.13818 0.88463 0.88452 0.89925 0.74365 0.83353 0.77009 0.94422 0.92919 0.95003 0.96189 0.92555 0.91982 0.97497 0.92591 0.94469 0.84038 0.81740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.71 10.31 36.01 0.37 -0.34 16 2 C 0.50 4.64 7.90 -10.99 -0.09 4.55 16 3 O -0.48 -6.76 15.36 5.56 0.09 -6.68 16 4 N -0.66 -5.56 5.39 -11.44 -0.06 -5.63 16 5 C 0.35 4.08 7.42 -154.75 -1.15 2.93 16 6 C -0.15 -1.75 9.51 -38.80 -0.37 -2.12 16 7 C -0.05 -0.67 5.91 -104.68 -0.62 -1.29 16 8 C 0.55 8.63 7.76 -12.18 -0.09 8.53 16 9 O -0.53 -10.15 16.10 5.36 0.09 -10.06 16 10 N -0.71 -10.78 5.03 -54.69 -0.28 -11.05 16 11 C 0.15 2.88 2.35 -67.97 -0.16 2.72 16 12 H 0.08 1.68 7.58 -51.93 -0.39 1.29 16 13 C -0.11 -2.33 5.50 -26.64 -0.15 -2.48 16 14 C -0.01 -0.31 5.59 -27.48 -0.15 -0.46 16 15 C -0.49 -12.57 5.51 -98.92 -0.55 -13.12 16 16 C 0.08 2.04 5.46 -17.82 -0.10 1.94 16 17 N -0.89 -24.96 12.73 55.43 0.71 -24.26 16 18 Si 0.89 20.87 27.27 -169.99 -4.64 16.23 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.27 -6.14 6.46 56.52 0.37 -5.77 16 22 C 0.01 0.31 5.97 -27.49 -0.16 0.15 16 23 C -0.11 -2.24 5.40 -26.63 -0.14 -2.38 16 24 C -0.17 -1.80 9.61 -39.01 -0.37 -2.17 16 25 C 0.13 1.38 11.17 -17.62 -0.20 1.18 16 26 N -0.47 -6.12 7.86 -12.41 -0.10 -6.22 16 27 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.42 1.88 8.70 -40.82 -0.36 1.53 16 31 H 0.15 1.56 7.74 -52.49 -0.41 1.15 16 32 H 0.40 4.79 6.74 -40.82 -0.28 4.52 16 33 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.03 0.73 4.78 -51.93 -0.25 0.49 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 38 H 0.06 1.62 7.07 -51.93 -0.37 1.25 16 39 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.14 1.11 6.53 -52.49 -0.34 0.77 16 43 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 354.56 15.07 5.34 5.34 Total: -1.00 -34.56 354.56 -8.56 -43.12 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -5.79 Total: 1.54 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -3.93 Total: -2.35 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: 0.27 Total: -47.15 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: 0.17 Total: -16.74 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.64 Total: 16.23 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.56 -8.56 -43.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147829403.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.763 kcal (2) G-P(sol) polarization free energy of solvation -34.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds