Wall clock time and date at job start Tue Mar 31 2020 11:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21274 * 119.99954 * 2 1 4 4 N 1.34772 * 119.99975 * 180.02562 * 2 1 3 5 5 C 1.39429 * 120.00079 * 185.08514 * 4 2 1 6 6 C 1.39007 * 119.63601 * 174.92721 * 5 4 2 7 7 C 1.39557 * 118.93566 * 179.72737 * 6 5 4 8 8 C 1.48159 * 120.88649 * 180.27073 * 7 6 5 9 9 O 1.21511 * 120.00522 * 0.02562 * 8 7 6 10 10 N 1.34784 * 119.99659 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99473 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.41530 * 324.85503 * 11 10 8 13 13 C 1.52950 * 109.41678 * 84.65306 * 11 10 8 14 14 C 1.53233 * 109.40808 * 183.70333 * 13 11 10 15 15 C 1.51271 * 108.53378 * 305.36891 * 14 13 11 16 16 C 1.37876 * 120.84683 * 231.32662 * 15 14 13 17 17 N 1.31520 * 119.99808 * 180.02562 * 16 15 14 18 18 Si 1.86791 * 120.00219 * 0.02562 * 16 15 14 19 19 H 1.48504 * 109.47306 * 90.00236 * 18 16 15 20 20 H 1.48506 * 109.47208 * 210.00290 * 18 16 15 21 21 H 1.48496 * 109.47142 * 329.99898 * 18 16 15 22 22 C 1.51268 * 118.29935 * 51.34417 * 15 14 13 23 23 C 1.52965 * 109.41185 * 205.00215 * 11 10 8 24 24 C 1.39984 * 118.22620 * 0.24992 * 7 6 5 25 25 C 1.38003 * 119.15365 * 359.97438 * 24 7 6 26 26 N 1.31879 * 120.99424 * 0.02562 * 25 24 7 27 27 H 1.08998 * 109.47426 * 269.99484 * 1 2 3 28 28 H 1.09002 * 109.47016 * 30.00353 * 1 2 3 29 29 H 1.09002 * 109.46556 * 149.99879 * 1 2 3 30 30 H 0.97002 * 120.00709 * 5.08137 * 4 2 1 31 31 H 1.08002 * 120.53687 * 359.97438 * 6 5 4 32 32 H 0.96993 * 119.99919 * 0.02562 * 10 8 7 33 33 H 1.09006 * 109.47952 * 303.67929 * 13 11 10 34 34 H 1.08997 * 109.48672 * 63.72013 * 13 11 10 35 35 H 1.09002 * 109.62831 * 185.65362 * 14 13 11 36 36 H 1.09000 * 109.62430 * 65.08243 * 14 13 11 37 37 H 0.96997 * 120.00218 * 179.97438 * 17 16 15 38 38 H 1.09001 * 109.62380 * 188.93679 * 22 15 14 39 39 H 1.09004 * 109.62440 * 68.37029 * 22 15 14 40 40 H 1.09003 * 109.48108 * 296.28108 * 23 11 10 41 41 H 1.09003 * 109.48428 * 56.29875 * 23 11 10 42 42 H 1.08001 * 120.42281 * 179.97438 * 24 7 6 43 43 H 1.07995 * 119.50251 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5711 -1.1696 0.1065 6 6 4.2502 -2.3779 0.2118 7 6 5.6421 -2.3636 0.3124 8 6 6.4099 -3.6261 0.4206 9 8 5.8281 -4.6928 0.4221 10 7 7.7538 -3.5913 0.5163 11 6 8.5130 -4.8398 0.6228 12 1 7.9417 -5.5627 1.2052 13 6 8.7654 -5.4023 -0.7769 14 6 9.4781 -6.7539 -0.6616 15 6 10.7278 -6.5690 0.1705 16 6 11.9518 -7.0122 -0.2840 17 7 13.0276 -6.8433 0.4534 18 14 12.0820 -7.8527 -1.9471 19 1 12.3396 -6.8348 -2.9973 20 1 13.1991 -8.8309 -1.9213 21 1 10.8111 -8.5606 -2.2449 22 6 10.6002 -5.8858 1.5140 23 6 9.8468 -4.5658 1.3198 24 6 6.2935 -1.1245 0.3079 25 6 5.5432 0.0291 0.2045 26 7 4.2287 -0.0218 0.1110 27 1 -0.3634 -0.0001 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3632 -0.8900 -0.5139 30 1 1.6988 -2.0056 -0.0753 31 1 3.7098 -3.3130 0.2117 32 1 8.2183 -2.7398 0.5148 33 1 7.8141 -5.5358 -1.2920 34 1 9.3899 -4.7089 -1.3403 35 1 9.7493 -7.1107 -1.6552 36 1 8.8194 -7.4750 -0.1777 37 1 13.8886 -7.1554 0.1339 38 1 11.5924 -5.6850 1.9183 39 1 10.0454 -6.5266 2.1994 40 1 10.4456 -3.8921 0.7068 41 1 9.6620 -4.1062 2.2907 42 1 7.3695 -1.0721 0.3843 43 1 6.0399 0.9880 0.2008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147829403.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:59 Heat of formation + Delta-G solvation = -60.100072 kcal Electronic energy + Delta-G solvation = -25634.489893 eV Core-core repulsion = 21871.423695 eV Total energy + Delta-G solvation = -3763.066198 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.03677 -40.96146 -39.80632 -38.41683 -36.09017 -35.45031 -33.98604 -33.09873 -31.93339 -31.48542 -29.88629 -29.13946 -26.08224 -24.37838 -24.01423 -23.32962 -22.36924 -21.36431 -20.99066 -19.61478 -18.28705 -18.05439 -17.67665 -17.31572 -16.65089 -16.59359 -16.42080 -16.12262 -16.01785 -15.54764 -15.06086 -14.90660 -14.81962 -14.75839 -14.52593 -14.14096 -13.95078 -13.51277 -13.39777 -13.06824 -13.04367 -12.79340 -12.70358 -12.56150 -11.93885 -11.90674 -11.83624 -11.54455 -11.43311 -11.23071 -10.99625 -10.86697 -10.68764 -10.53811 -10.20952 -9.95889 -9.40189 -8.17152 -6.10996 -0.34938 -0.02892 1.37827 1.42505 1.50383 1.55685 1.76702 1.91600 2.11375 2.41072 2.85314 3.10951 3.35289 3.49223 3.79830 3.86168 3.95459 4.01759 4.13245 4.19713 4.48113 4.51586 4.58577 4.66400 4.67009 4.71415 4.83350 4.96111 4.97235 5.04808 5.07069 5.10715 5.16357 5.22775 5.23584 5.55114 5.55767 5.61513 5.66431 5.76321 5.82577 6.18376 6.34849 6.51161 6.86333 6.94762 7.13050 7.25546 7.47236 8.93247 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.033369 B = 0.002378 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.904743 B =11770.947499 C =12043.062933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.495 3.505 3 O -0.534 6.534 4 N -0.652 5.652 5 C 0.343 3.657 6 C -0.150 4.150 7 C -0.068 4.068 8 C 0.555 3.445 9 O -0.570 6.570 10 N -0.700 5.700 11 C 0.166 3.834 12 H 0.060 0.940 13 C -0.107 4.107 14 C -0.016 4.016 15 C -0.499 4.499 16 C 0.025 3.975 17 N -0.927 5.927 18 Si 0.938 3.062 19 H -0.271 1.271 20 H -0.292 1.292 21 H -0.260 1.260 22 C 0.008 3.992 23 C -0.101 4.101 24 C -0.160 4.160 25 C 0.126 3.874 26 N -0.496 5.496 27 H 0.114 0.886 28 H 0.097 0.903 29 H 0.113 0.887 30 H 0.436 0.564 31 H 0.155 0.845 32 H 0.413 0.587 33 H 0.041 0.959 34 H 0.058 0.942 35 H 0.032 0.968 36 H 0.013 0.987 37 H 0.263 0.737 38 H 0.035 0.965 39 H -0.002 1.002 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.169 0.831 43 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.655 13.738 -1.233 25.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.284 3.716 3 O -0.407 6.407 4 N -0.302 5.302 5 C 0.111 3.889 6 C -0.175 4.175 7 C -0.080 4.080 8 C 0.342 3.658 9 O -0.450 6.450 10 N -0.351 5.351 11 C 0.062 3.938 12 H 0.079 0.921 13 C -0.146 4.146 14 C -0.054 4.054 15 C -0.518 4.518 16 C -0.173 4.173 17 N -0.566 5.566 18 Si 0.764 3.236 19 H -0.197 1.197 20 H -0.219 1.219 21 H -0.184 1.184 22 C -0.030 4.030 23 C -0.140 4.140 24 C -0.182 4.182 25 C -0.032 4.032 26 N -0.211 5.211 27 H 0.132 0.868 28 H 0.116 0.884 29 H 0.131 0.869 30 H 0.277 0.723 31 H 0.173 0.827 32 H 0.251 0.749 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.050 0.950 36 H 0.032 0.968 37 H 0.072 0.928 38 H 0.053 0.947 39 H 0.016 0.984 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.186 0.814 43 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -22.022 14.501 -1.274 26.399 hybrid contribution 1.141 -1.590 -0.628 2.055 sum -20.882 12.912 -1.902 24.625 Atomic orbital electron populations 1.21938 0.86468 1.06830 1.06631 1.22071 0.92587 0.82445 0.74485 1.90812 1.71478 1.32230 1.46209 1.43820 1.02869 1.12024 1.71466 1.18553 0.86163 0.88992 0.95164 1.21627 0.93875 0.98444 1.03515 1.20096 0.93864 0.93408 1.00582 1.18467 0.82606 0.88486 0.76248 1.90753 1.70353 1.32376 1.51552 1.46033 1.05698 1.10830 1.72553 1.20717 0.91787 0.84652 0.96645 0.92137 1.21800 0.98298 0.98486 0.96030 1.19727 0.95302 0.93973 0.96417 1.20579 0.91701 1.36386 1.03137 1.25545 0.95297 0.96307 1.00176 1.69949 0.99458 1.48079 1.39152 0.85853 0.77465 0.79081 0.81187 1.19666 1.21904 1.18420 1.19306 0.96104 0.92520 0.95106 1.21713 0.94057 0.99347 0.98854 1.22535 1.03061 0.91291 1.01298 1.23117 0.87562 0.99787 0.92699 1.67566 1.11263 1.27835 1.14484 0.86816 0.88406 0.86855 0.72298 0.82718 0.74914 0.94011 0.92318 0.94952 0.96847 0.92752 0.94659 0.98389 0.92111 0.92023 0.81350 0.79167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.93 10.31 71.24 0.73 -0.19 16 2 C 0.49 8.53 7.90 87.66 0.69 9.22 16 3 O -0.53 -14.93 15.36 -3.01 -0.05 -14.98 16 4 N -0.65 -9.96 5.39 -308.51 -1.66 -11.62 16 5 C 0.34 7.50 7.42 132.92 0.99 8.49 16 6 C -0.15 -3.29 9.51 22.77 0.22 -3.07 16 7 C -0.07 -1.60 5.91 -19.90 -0.12 -1.71 16 8 C 0.56 16.43 7.76 86.88 0.67 17.11 16 9 O -0.57 -21.26 16.10 -3.75 -0.06 -21.32 16 10 N -0.70 -19.58 5.03 -445.24 -2.24 -21.82 16 11 C 0.17 5.99 2.35 44.96 0.11 6.10 16 12 H 0.06 2.47 7.58 -2.39 -0.02 2.45 16 13 C -0.11 -4.21 5.50 30.66 0.17 -4.04 16 14 C -0.02 -0.73 5.59 30.11 0.17 -0.57 16 15 C -0.50 -25.61 5.51 -16.17 -0.09 -25.70 16 16 C 0.03 1.36 5.46 84.65 0.46 1.83 16 17 N -0.93 -52.97 12.73 21.45 0.27 -52.69 16 18 Si 0.94 42.71 27.27 68.60 1.87 44.58 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 20 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 21 H -0.26 -11.40 6.46 99.48 0.64 -10.76 16 22 C 0.01 0.37 5.97 30.10 0.18 0.55 16 23 C -0.10 -3.81 5.40 30.66 0.17 -3.64 16 24 C -0.16 -2.89 9.61 22.64 0.22 -2.67 16 25 C 0.13 2.41 11.17 84.63 0.94 3.36 16 26 N -0.50 -12.40 7.86 -193.18 -1.52 -13.92 16 27 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 30 H 0.44 3.03 8.70 -92.71 -0.81 2.22 16 31 H 0.16 3.08 7.74 -2.91 -0.02 3.05 16 32 H 0.41 8.64 6.74 -92.71 -0.62 8.01 16 33 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 34 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.03 1.45 4.78 -2.39 -0.01 1.44 16 36 H 0.01 0.61 8.14 -2.39 -0.02 0.60 16 37 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 38 H 0.03 1.87 7.07 -2.39 -0.02 1.85 16 39 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 40 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.17 2.00 6.53 -2.91 -0.02 1.98 16 43 H 0.19 2.47 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -76.65 354.56 1.69 -74.95 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -0.43 Total: 11.78 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: 5.51 Total: 5.04 kcal Atomic # 7 Polarization: -94.90 SS G_CDS: -5.15 Total: -100.05 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: -0.11 Total: -36.30 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 1.87 Total: 44.58 kcal Total: -76.65 1.69 -74.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147829403.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.854 kcal (2) G-P(sol) polarization free energy of solvation -76.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds