Wall clock time and date at job start Tue Mar 31 2020 11:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 116.99477 * 2 1 4 4 O 1.20818 * 120.00481 * 21.27439 * 3 2 1 5 5 C 1.50707 * 119.99583 * 201.27625 * 3 2 1 6 6 H 1.08996 * 109.32177 * 100.38194 * 5 3 2 7 7 C 1.53028 * 109.32305 * 340.74295 * 5 3 2 8 8 C 1.53964 * 108.84125 * 295.34576 * 7 5 3 9 9 H 1.08998 * 112.96519 * 168.20598 * 8 7 5 10 10 C 1.55412 * 106.43418 * 293.88550 * 8 7 5 11 11 C 1.55164 * 100.42583 * 73.29035 * 10 8 7 12 12 H 1.08994 * 113.06321 * 163.02909 * 11 10 8 13 13 C 1.52982 * 109.17943 * 219.93964 * 5 3 2 14 14 N 1.48210 * 104.22030 * 40.59249 * 11 10 8 15 15 C 1.38836 * 110.99673 * 211.59061 * 14 11 10 16 16 C 1.39962 * 119.96509 * 166.61242 * 15 14 11 17 17 N 1.32127 * 120.31411 * 180.02562 * 16 15 14 18 18 C 1.31933 * 120.27620 * 359.70051 * 17 16 15 19 19 C 1.40689 * 119.92979 * 0.56985 * 18 17 16 20 20 C 1.41260 * 120.15435 * 179.70548 * 19 18 17 21 21 H 1.08006 * 120.00007 * 171.48287 * 20 19 18 22 22 C 1.40060 * 120.00342 * 351.47863 * 20 19 18 23 23 N 1.30727 * 120.00239 * 322.11293 * 22 20 19 24 24 Si 1.86803 * 120.00005 * 142.10779 * 22 20 19 25 25 H 1.48503 * 109.47248 * 265.00768 * 24 22 20 26 26 H 1.48496 * 109.47064 * 145.00713 * 24 22 20 27 27 H 1.48499 * 109.47220 * 25.00267 * 24 22 20 28 28 N 1.32233 * 119.97148 * 346.62493 * 15 14 11 29 29 C 1.47495 * 108.15818 * 333.58672 * 14 11 10 30 30 H 1.09005 * 109.46895 * 143.87034 * 1 2 3 31 31 H 1.09001 * 109.47670 * 263.86824 * 1 2 3 32 32 H 1.09000 * 109.47443 * 23.87787 * 1 2 3 33 33 H 1.09004 * 109.57525 * 175.54519 * 7 5 3 34 34 H 1.08998 * 109.58070 * 55.15702 * 7 5 3 35 35 H 1.09001 * 111.21979 * 191.08427 * 10 8 7 36 36 H 1.08996 * 111.21947 * 315.49257 * 10 8 7 37 37 H 1.09008 * 109.53431 * 184.92193 * 13 5 3 38 38 H 1.08997 * 109.54056 * 305.15120 * 13 5 3 39 39 H 1.07995 * 119.84082 * 0.03499 * 16 15 14 40 40 H 1.08002 * 120.03813 * 180.30548 * 18 17 16 41 41 H 0.96997 * 120.00016 * 179.97438 * 23 22 20 42 42 H 1.08995 * 109.98359 * 120.37439 * 29 14 11 43 43 H 1.08999 * 109.98485 * 241.63765 * 29 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4668 2.1769 0.3796 5 6 3.4870 1.3153 -0.4736 6 1 3.4970 1.6927 -1.4961 7 6 4.1500 -0.0634 -0.4363 8 6 4.2273 -0.5385 1.0262 9 1 4.4977 -1.5904 1.1179 10 6 5.2049 0.4278 1.7513 11 6 4.3207 1.6989 1.8516 12 1 4.6897 2.4192 2.5816 13 6 4.2380 2.2915 0.4338 14 7 2.9759 1.1805 2.1971 15 6 1.9797 1.9855 1.6611 16 6 0.6564 1.5308 1.6269 17 7 -0.2970 2.2909 1.1180 18 6 -0.0108 3.4879 0.6428 19 6 1.3166 3.9536 0.6665 20 6 1.6293 5.2320 0.1533 21 1 2.6176 5.6440 0.2954 22 6 0.6580 5.9653 -0.5399 23 7 -0.1747 5.3537 -1.3408 24 14 0.5522 7.8173 -0.3198 25 1 -0.4590 8.1353 0.7202 26 1 0.1553 8.4466 -1.6049 27 1 1.8762 8.3423 0.1004 28 7 2.2820 3.1808 1.1833 29 6 2.8707 -0.2000 1.6885 30 1 -0.3633 -0.8301 -0.6060 31 1 -0.3634 -0.1098 1.0218 32 1 -0.3634 0.9397 -0.4160 33 1 5.1554 0.0035 -0.8520 34 1 3.5580 -0.7693 -1.0188 35 1 5.4699 0.0525 2.7398 36 1 6.0951 0.6127 1.1502 37 1 5.2443 2.4494 0.0455 38 1 3.7055 3.2420 0.4666 39 1 0.4135 0.5541 2.0185 40 1 -0.7939 4.1080 0.2322 41 1 -0.8476 5.8615 -1.8206 42 1 2.6767 -0.8867 2.5124 43 1 2.0695 -0.2658 0.9525 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154710962.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:07 Heat of formation + Delta-G solvation = 568.521806 kcal Electronic energy + Delta-G solvation = -31098.669839 eV Core-core repulsion = 27362.862731 eV Total energy + Delta-G solvation = -3735.807108 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -48.23928 -40.81170 -38.66404 -36.01451 -34.41805 -33.64880 -32.96871 -30.97750 -30.29333 -29.00156 -27.23603 -26.14893 -24.82509 -23.35206 -22.66712 -22.43011 -21.28821 -20.36888 -19.14418 -18.45641 -17.75913 -17.35884 -16.87233 -16.03993 -15.83656 -15.31612 -15.16331 -14.85967 -14.22859 -13.84813 -13.51203 -13.00487 -12.81136 -12.54988 -12.35731 -12.25754 -12.08284 -11.83008 -11.67739 -11.49385 -11.30988 -11.21498 -11.02375 -10.90169 -10.76091 -10.59286 -10.38382 -10.15716 -9.85319 -9.72601 -9.10847 -8.92367 -8.51660 -7.73199 -7.26855 -7.10366 -6.56820 -5.74853 -4.30192 1.76156 2.74200 2.97919 3.02643 3.21747 3.44666 3.75610 3.80976 4.25335 4.32518 4.88816 4.95806 5.08378 5.26147 5.43616 5.49457 5.54508 5.70587 5.72192 5.74258 5.80627 5.83818 5.94491 5.99620 6.03487 6.13063 6.22569 6.24588 6.30602 6.36456 6.52117 6.56113 6.61913 6.67224 6.80340 6.95416 7.00123 7.13549 7.31778 7.44616 7.53071 7.75101 7.89549 8.15139 8.32160 8.44584 8.59995 9.02817 9.67666 9.81433 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021501 B = 0.006480 C = 0.005722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.939233 B = 4319.662503 C = 4891.932726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 O -0.277 6.277 3 C 0.022 3.978 4 O -0.196 6.196 5 C -0.021 4.021 6 H 0.083 0.917 7 C -0.108 4.108 8 C -0.095 4.095 9 H 0.083 0.917 10 C -0.126 4.126 11 C 0.082 3.918 12 H 0.098 0.902 13 C -0.182 4.182 14 N -0.434 5.434 15 C 0.414 3.586 16 C -0.120 4.120 17 N -0.483 5.483 18 C -0.027 4.027 19 C 0.240 3.760 20 C -0.438 4.438 21 H 0.091 0.909 22 C 0.093 3.907 23 N -0.752 5.752 24 Si 0.909 3.091 25 H -0.264 1.264 26 H -0.276 1.276 27 H -0.257 1.257 28 N -0.495 5.495 29 C -0.147 4.147 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.055 0.945 38 H 0.171 0.829 39 H 0.136 0.864 40 H 0.150 0.850 41 H 0.288 0.712 42 H 0.058 0.942 43 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.374 -6.592 0.239 8.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.191 6.191 3 C -0.106 4.106 4 O -0.087 6.087 5 C -0.040 4.040 6 H 0.101 0.899 7 C -0.145 4.145 8 C -0.114 4.114 9 H 0.101 0.899 10 C -0.165 4.165 11 C -0.025 4.025 12 H 0.115 0.885 13 C -0.220 4.220 14 N -0.161 5.161 15 C 0.189 3.811 16 C -0.279 4.279 17 N -0.206 5.206 18 C -0.188 4.188 19 C 0.114 3.886 20 C -0.471 4.471 21 H 0.109 0.891 22 C -0.133 4.133 23 N -0.375 5.375 24 Si 0.731 3.269 25 H -0.189 1.189 26 H -0.201 1.201 27 H -0.180 1.180 28 N -0.240 5.240 29 C -0.267 4.267 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.187 0.813 39 H 0.153 0.847 40 H 0.167 0.833 41 H 0.099 0.901 42 H 0.077 0.923 43 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 4.912 -6.511 0.654 8.182 hybrid contribution 0.082 0.640 -0.619 0.894 sum 4.994 -5.871 0.035 7.708 Atomic orbital electron populations 1.24213 0.78641 1.03064 1.02923 1.84911 1.21699 1.33375 1.79159 1.23348 0.98099 0.82173 1.06937 1.91821 1.66053 1.31189 1.19661 1.20160 0.87701 0.96251 0.99870 0.89925 1.21842 0.99874 0.96243 0.96582 1.22515 0.95691 0.98230 0.94989 0.89903 1.23013 0.97479 0.95829 1.00134 1.22910 0.87149 0.95759 0.96702 0.88453 1.23537 1.00156 1.05691 0.92572 1.61725 1.01464 1.03405 1.49531 1.18058 0.94004 0.92906 0.76172 1.23306 0.89737 1.04425 1.10395 1.67878 1.36836 1.05826 1.10073 1.22947 0.95324 0.93185 1.07318 1.18786 0.88930 0.90535 0.90359 1.19175 0.99628 0.97584 1.30744 0.89141 1.25984 0.93903 1.02022 0.91391 1.69919 1.13495 1.40016 1.14049 0.86288 0.80394 0.81305 0.78876 1.18859 1.20140 1.18028 1.69411 1.32055 1.03720 1.18844 1.27884 1.07260 0.85795 1.05733 0.92635 0.90291 0.89472 0.92129 0.91581 0.91708 0.91053 0.92658 0.81341 0.84715 0.83349 0.90107 0.92334 0.75434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.06 9.18 101.05 0.93 0.99 16 2 O -0.28 -5.22 5.61 -39.25 -0.22 -5.44 16 3 C 0.02 0.45 3.73 -2.30 -0.01 0.44 16 4 O -0.20 -4.60 2.19 3.01 0.01 -4.59 16 5 C -0.02 -0.38 3.08 -91.76 -0.28 -0.67 16 6 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 7 C -0.11 -1.65 5.05 -26.21 -0.13 -1.78 16 8 C -0.10 -1.43 4.32 -87.94 -0.38 -1.81 16 9 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 10 C -0.13 -1.84 6.17 -24.31 -0.15 -1.99 16 11 C 0.08 1.45 4.11 -65.38 -0.27 1.18 16 12 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 13 C -0.18 -3.38 4.84 -26.28 -0.13 -3.51 16 14 N -0.43 -8.56 5.24 -296.02 -1.55 -10.11 16 15 C 0.41 9.30 3.78 -193.32 -0.73 8.57 16 16 C -0.12 -2.74 5.55 -16.78 -0.09 -2.83 16 17 N -0.48 -11.87 7.92 -73.84 -0.59 -12.45 16 18 C -0.03 -0.69 9.28 -16.58 -0.15 -0.84 16 19 C 0.24 6.19 5.34 -84.84 -0.45 5.74 16 20 C -0.44 -10.98 9.19 -37.75 -0.35 -11.33 16 21 H 0.09 2.23 8.05 -52.48 -0.42 1.80 16 22 C 0.09 2.15 4.82 -17.34 -0.08 2.07 16 23 N -0.75 -17.93 11.31 55.55 0.63 -17.31 16 24 Si 0.91 17.35 29.68 -169.99 -5.05 12.30 16 25 H -0.26 -5.07 7.11 56.52 0.40 -4.66 16 26 H -0.28 -5.11 7.11 56.52 0.40 -4.71 16 27 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 28 N -0.50 -11.86 4.68 -164.11 -0.77 -12.63 16 29 C -0.15 -2.59 5.23 -2.60 -0.01 -2.60 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.08 1.40 5.31 -51.93 -0.28 1.13 16 32 H 0.09 1.88 5.82 -51.93 -0.30 1.58 16 33 H 0.06 0.82 7.98 -51.93 -0.41 0.41 16 34 H 0.07 1.00 7.68 -51.93 -0.40 0.60 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.93 7.75 -51.93 -0.40 0.53 16 37 H 0.05 0.91 8.00 -51.92 -0.42 0.50 16 38 H 0.17 3.76 4.69 -94.14 -0.44 3.31 16 39 H 0.14 2.85 5.11 -52.49 -0.27 2.59 16 40 H 0.15 3.98 5.84 -52.49 -0.31 3.67 16 41 H 0.29 6.15 8.29 -40.82 -0.34 5.81 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.24 4.40 1.19 -71.16 -0.08 4.31 16 LS Contribution 296.21 15.07 4.46 4.46 Total: -1.00 -26.40 296.21 -10.77 -37.17 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: -5.40 Total: 16.98 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -2.30 Total: -8.37 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: -2.28 Total: -52.50 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: -0.21 Total: -10.03 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -5.05 Total: 12.30 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -26.40 -10.77 -37.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154710962.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 605.689 kcal (2) G-P(sol) polarization free energy of solvation -26.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 579.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 568.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds