Wall clock time and date at job start Tue Mar 31 2020 11:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 116.99477 * 2 1 4 4 O 1.20818 * 120.00481 * 21.27439 * 3 2 1 5 5 C 1.50707 * 119.99583 * 201.27625 * 3 2 1 6 6 H 1.08996 * 109.32177 * 100.38194 * 5 3 2 7 7 C 1.53028 * 109.32305 * 340.74295 * 5 3 2 8 8 C 1.53964 * 108.84125 * 295.34576 * 7 5 3 9 9 H 1.08998 * 112.96519 * 168.20598 * 8 7 5 10 10 C 1.55412 * 106.43418 * 293.88550 * 8 7 5 11 11 C 1.55164 * 100.42583 * 73.29035 * 10 8 7 12 12 H 1.08994 * 113.06321 * 163.02909 * 11 10 8 13 13 C 1.52982 * 109.17943 * 219.93964 * 5 3 2 14 14 N 1.48210 * 104.22030 * 40.59249 * 11 10 8 15 15 C 1.38836 * 110.99673 * 211.59061 * 14 11 10 16 16 C 1.39962 * 119.96509 * 166.61242 * 15 14 11 17 17 N 1.32127 * 120.31411 * 180.02562 * 16 15 14 18 18 C 1.31933 * 120.27620 * 359.70051 * 17 16 15 19 19 C 1.40689 * 119.92979 * 0.56985 * 18 17 16 20 20 C 1.41260 * 120.15435 * 179.70548 * 19 18 17 21 21 H 1.08006 * 120.00007 * 171.48287 * 20 19 18 22 22 C 1.40060 * 120.00342 * 351.47863 * 20 19 18 23 23 N 1.30727 * 120.00239 * 322.11293 * 22 20 19 24 24 Si 1.86803 * 120.00005 * 142.10779 * 22 20 19 25 25 H 1.48503 * 109.47248 * 265.00768 * 24 22 20 26 26 H 1.48496 * 109.47064 * 145.00713 * 24 22 20 27 27 H 1.48499 * 109.47220 * 25.00267 * 24 22 20 28 28 N 1.32233 * 119.97148 * 346.62493 * 15 14 11 29 29 C 1.47495 * 108.15818 * 333.58672 * 14 11 10 30 30 H 1.09005 * 109.46895 * 143.87034 * 1 2 3 31 31 H 1.09001 * 109.47670 * 263.86824 * 1 2 3 32 32 H 1.09000 * 109.47443 * 23.87787 * 1 2 3 33 33 H 1.09004 * 109.57525 * 175.54519 * 7 5 3 34 34 H 1.08998 * 109.58070 * 55.15702 * 7 5 3 35 35 H 1.09001 * 111.21979 * 191.08427 * 10 8 7 36 36 H 1.08996 * 111.21947 * 315.49257 * 10 8 7 37 37 H 1.09008 * 109.53431 * 184.92193 * 13 5 3 38 38 H 1.08997 * 109.54056 * 305.15120 * 13 5 3 39 39 H 1.07995 * 119.84082 * 0.03499 * 16 15 14 40 40 H 1.08002 * 120.03813 * 180.30548 * 18 17 16 41 41 H 0.96997 * 120.00016 * 179.97438 * 23 22 20 42 42 H 1.08995 * 109.98359 * 120.37439 * 29 14 11 43 43 H 1.08999 * 109.98485 * 241.63765 * 29 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4668 2.1769 0.3796 5 6 3.4870 1.3153 -0.4736 6 1 3.4970 1.6927 -1.4961 7 6 4.1500 -0.0634 -0.4363 8 6 4.2273 -0.5385 1.0262 9 1 4.4977 -1.5904 1.1179 10 6 5.2049 0.4278 1.7513 11 6 4.3207 1.6989 1.8516 12 1 4.6897 2.4192 2.5816 13 6 4.2380 2.2915 0.4338 14 7 2.9759 1.1805 2.1971 15 6 1.9797 1.9855 1.6611 16 6 0.6564 1.5308 1.6269 17 7 -0.2970 2.2909 1.1180 18 6 -0.0108 3.4879 0.6428 19 6 1.3166 3.9536 0.6665 20 6 1.6293 5.2320 0.1533 21 1 2.6176 5.6440 0.2954 22 6 0.6580 5.9653 -0.5399 23 7 -0.1747 5.3537 -1.3408 24 14 0.5522 7.8173 -0.3198 25 1 -0.4590 8.1353 0.7202 26 1 0.1553 8.4466 -1.6049 27 1 1.8762 8.3423 0.1004 28 7 2.2820 3.1808 1.1833 29 6 2.8707 -0.2000 1.6885 30 1 -0.3633 -0.8301 -0.6060 31 1 -0.3634 -0.1098 1.0218 32 1 -0.3634 0.9397 -0.4160 33 1 5.1554 0.0035 -0.8520 34 1 3.5580 -0.7693 -1.0188 35 1 5.4699 0.0525 2.7398 36 1 6.0951 0.6127 1.1502 37 1 5.2443 2.4494 0.0455 38 1 3.7055 3.2420 0.4666 39 1 0.4135 0.5541 2.0185 40 1 -0.7939 4.1080 0.2322 41 1 -0.8476 5.8615 -1.8206 42 1 2.6767 -0.8867 2.5124 43 1 2.0695 -0.2658 0.9525 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154710962.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:06 Heat of formation + Delta-G solvation = 546.025075 kcal Electronic energy + Delta-G solvation = -31099.645371 eV Core-core repulsion = 27362.862731 eV Total energy + Delta-G solvation = -3736.782639 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -49.94918 -42.31385 -40.23150 -37.75629 -36.14101 -35.19823 -34.71060 -32.41926 -31.70610 -30.67368 -28.90215 -27.77395 -26.26347 -24.88720 -24.36543 -24.07350 -22.84238 -21.86739 -20.56060 -20.10173 -19.51263 -18.91778 -18.45902 -17.72733 -17.41791 -17.02859 -16.73830 -16.47038 -15.81010 -15.38927 -15.16352 -14.33014 -14.26092 -14.17594 -13.80172 -13.65555 -13.56073 -13.35317 -13.23471 -13.06132 -12.85271 -12.75219 -12.62231 -12.47260 -12.25325 -12.05929 -11.93820 -11.55877 -11.32522 -11.15190 -10.85849 -10.48469 -10.08483 -9.25166 -9.04348 -8.83909 -8.34639 -7.50170 -6.14893 0.04706 1.08915 1.37138 1.51898 1.57038 1.77123 2.14120 2.16692 2.54651 2.70103 3.44921 3.52628 3.63689 3.72712 3.92274 4.01580 4.09452 4.18002 4.21720 4.30439 4.43647 4.46458 4.55203 4.60318 4.70645 4.77971 4.80652 4.95799 4.99814 5.01147 5.07546 5.14550 5.18560 5.19762 5.28497 5.32356 5.41135 5.48648 5.75316 5.84585 5.86983 6.11870 6.21789 6.35845 6.50787 6.73027 6.84891 7.21338 7.90905 8.08864 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021501 B = 0.006480 C = 0.005722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.939233 B = 4319.662503 C = 4891.932726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.268 6.268 3 C 0.064 3.936 4 O -0.222 6.222 5 C -0.032 4.032 6 H 0.076 0.924 7 C -0.100 4.100 8 C -0.086 4.086 9 H 0.116 0.884 10 C -0.112 4.112 11 C 0.073 3.927 12 H 0.092 0.908 13 C -0.179 4.179 14 N -0.439 5.439 15 C 0.405 3.595 16 C -0.137 4.137 17 N -0.486 5.486 18 C -0.095 4.095 19 C 0.227 3.773 20 C -0.468 4.468 21 H 0.083 0.917 22 C 0.058 3.942 23 N -0.779 5.779 24 Si 0.982 3.018 25 H -0.265 1.265 26 H -0.260 1.260 27 H -0.254 1.254 28 N -0.495 5.495 29 C -0.159 4.159 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.133 0.867 39 H 0.148 0.852 40 H 0.125 0.875 41 H 0.297 0.703 42 H 0.068 0.932 43 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.035 -8.661 -0.026 11.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.181 6.181 3 C -0.066 4.066 4 O -0.112 6.112 5 C -0.051 4.051 6 H 0.094 0.906 7 C -0.138 4.138 8 C -0.105 4.105 9 H 0.134 0.866 10 C -0.150 4.150 11 C -0.034 4.034 12 H 0.110 0.890 13 C -0.217 4.217 14 N -0.168 5.168 15 C 0.179 3.821 16 C -0.299 4.299 17 N -0.210 5.210 18 C -0.252 4.252 19 C 0.103 3.897 20 C -0.500 4.500 21 H 0.101 0.899 22 C -0.165 4.165 23 N -0.402 5.402 24 Si 0.802 3.198 25 H -0.190 1.190 26 H -0.185 1.185 27 H -0.177 1.177 28 N -0.241 5.241 29 C -0.278 4.278 30 H 0.113 0.887 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.109 0.891 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.115 0.885 37 H 0.101 0.899 38 H 0.149 0.851 39 H 0.164 0.836 40 H 0.142 0.858 41 H 0.108 0.892 42 H 0.087 0.913 43 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 7.548 -8.535 0.357 11.399 hybrid contribution -0.610 1.007 -0.522 1.288 sum 6.937 -7.528 -0.165 10.238 Atomic orbital electron populations 1.24143 0.78009 1.02553 1.03571 1.85069 1.22233 1.32102 1.78728 1.24130 0.99348 0.82527 1.00610 1.92004 1.65545 1.32292 1.21374 1.20427 0.86417 0.98994 0.99245 0.90560 1.21838 1.01186 0.93417 0.97324 1.22582 0.93739 1.00153 0.94048 0.86582 1.22989 0.97374 0.93207 1.01457 1.23067 0.86892 0.97617 0.95788 0.88982 1.23323 1.00943 1.03867 0.93548 1.61828 1.01795 1.04078 1.49063 1.18395 0.94801 0.92811 0.76099 1.23505 0.90391 1.04688 1.11303 1.67724 1.37796 1.05572 1.09898 1.22440 0.95217 0.94643 1.12873 1.18946 0.89267 0.90949 0.90584 1.19394 1.00129 0.98445 1.32071 0.89859 1.26833 0.92958 1.06339 0.90372 1.69932 1.13845 1.41992 1.14423 0.85202 0.80207 0.75286 0.79153 1.19023 1.18475 1.17699 1.69661 1.31417 1.04415 1.18577 1.27900 1.09030 0.84724 1.06120 0.88711 0.90101 0.93219 0.89108 0.90977 0.90335 0.88505 0.89945 0.85088 0.83572 0.85769 0.89181 0.91342 0.76196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.31 9.18 113.37 1.04 1.35 16 2 O -0.27 -9.63 5.61 -51.40 -0.29 -9.92 16 3 C 0.06 2.65 3.73 46.42 0.17 2.82 16 4 O -0.22 -10.76 2.19 118.46 0.26 -10.50 16 5 C -0.03 -1.11 3.08 -11.53 -0.04 -1.15 16 6 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 7 C -0.10 -2.58 5.05 30.93 0.16 -2.42 16 8 C -0.09 -2.12 4.32 -9.06 -0.04 -2.16 16 9 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 10 C -0.11 -2.70 6.17 32.17 0.20 -2.50 16 11 C 0.07 2.41 4.11 45.70 0.19 2.60 16 12 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 13 C -0.18 -6.36 4.84 30.89 0.15 -6.21 16 14 N -0.44 -16.68 5.24 ******* -6.28 -22.96 16 15 C 0.41 18.47 3.78 108.56 0.41 18.88 16 16 C -0.14 -6.42 5.55 85.07 0.47 -5.94 16 17 N -0.49 -25.37 7.92 -501.99 -3.98 -29.35 16 18 C -0.09 -5.33 9.28 85.28 0.79 -4.53 16 19 C 0.23 12.49 5.34 40.15 0.21 12.70 16 20 C -0.47 -24.95 9.19 23.46 0.22 -24.73 16 21 H 0.08 4.36 8.05 -2.91 -0.02 4.34 16 22 C 0.06 2.85 4.82 85.30 0.41 3.26 16 23 N -0.78 -39.32 11.31 21.84 0.25 -39.07 16 24 Si 0.98 36.79 29.68 68.60 2.04 38.83 16 25 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 26 H -0.26 -9.02 7.11 99.48 0.71 -8.31 16 27 H -0.25 -9.27 7.11 99.48 0.71 -8.57 16 28 N -0.49 -24.65 4.68 -850.76 -3.98 -28.64 16 29 C -0.16 -5.06 5.23 86.77 0.45 -4.61 16 30 H 0.09 2.63 8.14 -2.38 -0.02 2.61 16 31 H 0.08 2.85 5.31 -2.39 -0.01 2.84 16 32 H 0.05 2.20 5.82 -2.39 -0.01 2.19 16 33 H 0.09 1.89 7.98 -2.38 -0.02 1.87 16 34 H 0.07 1.82 7.68 -2.39 -0.02 1.80 16 35 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.10 1.91 7.75 -2.39 -0.02 1.89 16 37 H 0.08 2.47 8.00 -2.38 -0.02 2.46 16 38 H 0.13 5.94 4.69 -85.73 -0.40 5.54 16 39 H 0.15 6.24 5.11 -2.91 -0.01 6.23 16 40 H 0.13 7.34 5.84 -2.91 -0.02 7.32 16 41 H 0.30 13.31 8.29 -92.71 -0.77 12.54 16 42 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.23 7.88 1.19 -168.35 -0.20 7.68 16 Total: -1.00 -62.42 296.21 -6.71 -69.12 By element: Atomic # 1 Polarization: 44.65 SS G_CDS: 0.48 Total: 45.13 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: 4.80 Total: -12.64 kcal Atomic # 7 Polarization: -106.03 SS G_CDS: -13.99 Total: -120.02 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.03 Total: -20.42 kcal Atomic # 14 Polarization: 36.79 SS G_CDS: 2.04 Total: 38.83 kcal Total: -62.42 -6.71 -69.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154710962.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 615.150 kcal (2) G-P(sol) polarization free energy of solvation -62.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 552.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 546.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds