Wall clock time and date at job start Tue Mar 31 2020 11:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 O 1.42094 * 108.57748 * 2 1 4 4 O 1.42101 * 108.57849 * 228.97106 * 2 1 3 5 5 C 1.81410 * 101.91889 * 114.48588 * 2 1 3 6 6 C 1.52999 * 109.47044 * 179.97438 * 5 2 1 7 7 C 1.53035 * 109.45926 * 174.99815 * 6 5 2 8 8 C 1.53191 * 109.31327 * 181.37380 * 7 6 5 9 9 N 1.46926 * 108.89109 * 305.29292 * 8 7 6 10 10 C 1.34773 * 120.63302 * 233.67613 * 9 8 7 11 11 O 1.21283 * 119.99890 * 359.97438 * 10 9 8 12 12 C 1.50700 * 120.00452 * 180.02562 * 10 9 8 13 13 C 1.52997 * 109.47382 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.46922 * 179.97438 * 13 12 10 15 15 C 1.50700 * 109.46708 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00796 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99794 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99929 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00114 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46952 * 90.00080 * 19 17 15 21 21 H 1.48501 * 109.46864 * 210.00340 * 19 17 15 22 22 H 1.48496 * 109.46938 * 329.99956 * 19 17 15 23 23 C 1.47207 * 118.55531 * 53.54119 * 9 8 7 24 24 C 1.53038 * 109.44764 * 295.06277 * 6 5 2 25 25 H 1.08999 * 109.46728 * 305.51916 * 1 2 3 26 26 H 1.08996 * 109.46881 * 65.51069 * 1 2 3 27 27 H 1.08993 * 109.47353 * 185.51809 * 1 2 3 28 28 H 1.08996 * 109.46972 * 59.99513 * 5 2 1 29 29 H 1.09004 * 109.46453 * 300.00022 * 5 2 1 30 30 H 1.09004 * 109.45591 * 55.02929 * 6 5 2 31 31 H 1.09003 * 109.49576 * 61.42048 * 7 6 5 32 32 H 1.09000 * 109.52700 * 301.34097 * 7 6 5 33 33 H 1.09002 * 109.58786 * 65.15336 * 8 7 6 34 34 H 1.08996 * 109.58870 * 185.43616 * 8 7 6 35 35 H 1.08998 * 109.46962 * 300.00024 * 12 10 9 36 36 H 1.09003 * 109.46750 * 59.99342 * 12 10 9 37 37 H 1.08998 * 109.47350 * 300.00103 * 13 12 10 38 38 H 1.09004 * 109.46747 * 60.00319 * 13 12 10 39 39 H 1.08998 * 109.47498 * 300.00388 * 14 13 12 40 40 H 1.08996 * 109.47166 * 60.00703 * 14 13 12 41 41 H 0.97001 * 119.99587 * 179.97438 * 18 17 15 42 42 H 1.08996 * 109.53610 * 186.67231 * 23 9 8 43 43 H 1.09002 * 109.68003 * 66.36699 * 23 9 8 44 44 H 1.09002 * 109.49557 * 298.57093 * 24 6 5 45 45 H 1.08996 * 109.50003 * 58.66990 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1887 -0.7357 1.6154 6 6 3.7054 -0.8196 1.7981 7 6 4.0220 -1.3235 3.2080 8 6 5.5411 -1.3736 3.3990 9 7 6.1291 -2.1856 2.3248 10 6 6.9381 -3.2241 2.6134 11 8 7.1875 -3.4957 3.7689 12 6 7.5340 -4.0471 1.5005 13 6 8.4068 -5.1539 2.0956 14 6 9.0112 -5.9898 0.9656 15 6 9.8713 -7.0796 1.5518 16 1 9.9761 -7.1675 2.6231 17 6 10.5238 -7.9651 0.7204 18 7 10.3958 -7.8585 -0.5842 19 14 11.5894 -9.3164 1.4470 20 1 10.7628 -10.5281 1.6785 21 1 12.6895 -9.6404 0.5035 22 1 12.1632 -8.8548 2.7365 23 6 5.8125 -1.8415 0.9290 24 6 4.2903 -1.7861 0.7657 25 1 -0.3633 0.5971 0.8364 26 1 -0.3633 0.4260 -0.9352 27 1 -0.3634 -1.0228 0.0988 28 1 1.7609 -1.7369 1.6666 29 1 1.7609 -0.1170 2.4043 30 1 4.1432 0.1689 1.6589 31 1 3.6056 -2.3223 3.3394 32 1 3.5850 -0.6476 3.9431 33 1 5.9481 -0.3632 3.3578 34 1 5.7734 -1.8220 4.3649 35 1 6.7338 -4.4930 0.9099 36 1 8.1437 -3.4077 0.8621 37 1 9.2070 -4.7077 2.6860 38 1 7.7973 -5.7934 2.7342 39 1 8.2107 -6.4360 0.3755 40 1 9.6205 -5.3507 0.3268 41 1 10.8551 -8.4813 -1.1690 42 1 6.2239 -2.6010 0.2641 43 1 6.2419 -0.8701 0.6839 44 1 3.8714 -2.7806 0.9201 45 1 4.0445 -1.4391 -0.2378 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159257484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:09 Heat of formation + Delta-G solvation = -126.759406 kcal Electronic energy + Delta-G solvation = -24685.039867 eV Core-core repulsion = 21022.234303 eV Total energy + Delta-G solvation = -3662.805564 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.18120 -37.94859 -37.41063 -36.44887 -34.23624 -34.20971 -32.16624 -31.26101 -30.31329 -29.03501 -27.65585 -24.49056 -23.71935 -23.04101 -21.04089 -20.07535 -19.31586 -18.83941 -17.22209 -16.97281 -16.60070 -16.38041 -16.20126 -15.60616 -15.53493 -14.90549 -14.43252 -14.27541 -14.11893 -14.09985 -13.75327 -13.70529 -13.32575 -13.17257 -12.73032 -12.53601 -12.40705 -12.31826 -12.20745 -11.77589 -11.71806 -11.58018 -11.42477 -11.41513 -11.26972 -10.96581 -10.78045 -10.53185 -10.50483 -10.39800 -9.63684 -9.60620 -9.22449 -8.98188 -8.64130 -8.29034 -5.94721 -3.95957 -0.51575 2.24897 2.90942 3.03262 3.15029 3.36759 3.42435 3.47402 3.49461 3.96944 4.06997 4.24850 4.34985 4.39639 4.51573 4.66713 4.78060 4.89326 4.95649 5.02758 5.07891 5.09911 5.26529 5.41257 5.41512 5.49285 5.52637 5.63663 5.72591 5.74414 5.77695 5.84269 5.99459 6.28721 6.53722 6.76347 6.97150 7.19659 7.48584 7.74495 7.87575 8.06240 8.43439 8.50358 9.11169 9.67767 11.16804 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024248 B = 0.002315 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.459495 B =12092.420598 C =12861.930163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.659 4.659 2 S 2.415 3.585 3 O -0.939 6.939 4 O -0.931 6.931 5 C -0.605 4.605 6 C -0.075 4.075 7 C -0.120 4.120 8 C 0.108 3.892 9 N -0.623 5.623 10 C 0.517 3.483 11 O -0.539 6.539 12 C -0.139 4.139 13 C -0.095 4.095 14 C 0.020 3.980 15 C -0.517 4.517 16 H 0.056 0.944 17 C 0.055 3.945 18 N -0.898 5.898 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.108 3.892 24 C -0.164 4.164 25 H 0.127 0.873 26 H 0.129 0.871 27 H 0.129 0.871 28 H 0.135 0.865 29 H 0.133 0.867 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.260 0.740 42 H 0.098 0.902 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.665 19.913 2.443 31.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.598 3.402 3 O -0.936 6.936 4 O -0.928 6.928 5 C -0.734 4.734 6 C -0.095 4.095 7 C -0.159 4.159 8 C -0.015 4.015 9 N -0.358 5.358 10 C 0.307 3.693 11 O -0.415 6.415 12 C -0.178 4.178 13 C -0.133 4.133 14 C -0.017 4.017 15 C -0.556 4.556 16 H 0.074 0.926 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.015 4.015 24 C -0.203 4.203 25 H 0.146 0.854 26 H 0.148 0.852 27 H 0.147 0.853 28 H 0.153 0.847 29 H 0.152 0.848 30 H 0.107 0.893 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.069 0.931 42 H 0.116 0.884 43 H 0.089 0.911 44 H 0.098 0.902 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -22.896 19.979 2.237 30.470 hybrid contribution -0.272 -0.986 0.854 1.332 sum -23.168 18.994 3.091 30.118 Atomic orbital electron populations 1.30291 1.27111 1.11620 1.11788 1.08028 0.78159 0.75968 0.78065 1.93611 1.78943 1.34487 1.86583 1.93606 1.78288 1.66715 1.54217 1.30394 1.06011 1.14124 1.22903 1.20907 0.89735 1.01058 0.97767 1.21927 0.96586 1.02278 0.95114 1.21521 0.91847 0.95447 0.92688 1.48322 1.49078 1.31662 1.06784 1.21276 0.77374 0.79354 0.91307 1.90658 1.59959 1.68832 1.22058 1.21881 1.00833 0.98513 0.96606 1.21452 0.97415 0.94762 0.99641 1.19131 0.95529 0.94130 0.92880 1.21272 1.28153 1.13041 0.93086 0.92609 1.25027 0.96851 0.97840 0.94846 1.69966 1.43767 1.37573 1.02422 0.86592 0.80161 0.82272 0.78976 1.20702 1.21274 1.19858 1.21764 0.94715 1.02329 0.82702 1.22539 0.96506 1.00989 1.00223 0.85442 0.85222 0.85257 0.84713 0.84838 0.89266 0.90949 0.90512 0.91677 0.88724 0.89338 0.89329 0.92733 0.92785 0.96608 0.96591 0.93081 0.88409 0.91072 0.90155 0.88021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -1.38 10.62 101.05 1.07 -0.30 16 2 S 2.42 12.97 5.16 -107.50 -0.55 12.42 16 3 O -0.94 -8.66 18.10 -57.83 -1.05 -9.70 16 4 O -0.93 -8.44 15.43 -57.83 -0.89 -9.34 16 5 C -0.61 -2.30 5.26 37.16 0.20 -2.11 16 6 C -0.08 -0.52 2.15 -90.58 -0.19 -0.72 16 7 C -0.12 -0.91 5.36 -26.61 -0.14 -1.05 16 8 C 0.11 1.13 6.42 -3.71 -0.02 1.11 16 9 N -0.62 -7.87 2.98 -172.54 -0.51 -8.39 16 10 C 0.52 8.62 7.70 -10.99 -0.08 8.54 16 11 O -0.54 -10.95 15.39 5.55 0.09 -10.87 16 12 C -0.14 -2.37 4.05 -27.88 -0.11 -2.49 16 13 C -0.09 -2.09 4.44 -26.73 -0.12 -2.21 16 14 C 0.02 0.53 4.97 -27.88 -0.14 0.40 16 15 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 16 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 17 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16 19 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 23 C 0.11 1.10 6.35 -3.56 -0.02 1.07 16 24 C -0.16 -1.43 5.04 -26.61 -0.13 -1.57 16 25 H 0.13 0.03 8.14 -51.92 -0.42 -0.39 16 26 H 0.13 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.13 0.07 8.14 -51.93 -0.42 -0.35 16 28 H 0.13 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.13 0.17 8.14 -51.92 -0.42 -0.26 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 1.16 7.00 -51.93 -0.36 0.79 16 35 H 0.09 1.38 7.70 -51.93 -0.40 0.98 16 36 H 0.09 1.39 7.96 -51.93 -0.41 0.98 16 37 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 38 H 0.05 1.23 8.10 -51.93 -0.42 0.81 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.10 1.00 5.97 -51.93 -0.31 0.69 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.10 0.90 5.32 -51.93 -0.28 0.62 16 LS Contribution 370.19 15.07 5.58 5.58 Total: -1.00 -39.26 370.19 -9.38 -48.64 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: -7.64 Total: -5.68 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -0.12 Total: -13.26 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: 0.22 Total: -35.01 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -1.85 Total: -29.91 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Atomic # 16 Polarization: 12.97 SS G_CDS: -0.55 Total: 12.42 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -39.26 -9.38 -48.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159257484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.117 kcal (2) G-P(sol) polarization free energy of solvation -39.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds