Wall clock time and date at job start Tue Mar 31 2020 11:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 O 1.42094 * 108.57748 * 2 1 4 4 O 1.42101 * 108.57849 * 228.97106 * 2 1 3 5 5 C 1.81410 * 101.91889 * 114.48588 * 2 1 3 6 6 C 1.52999 * 109.47044 * 179.97438 * 5 2 1 7 7 C 1.53035 * 109.45926 * 174.99815 * 6 5 2 8 8 C 1.53191 * 109.31327 * 181.37380 * 7 6 5 9 9 N 1.46926 * 108.89109 * 305.29292 * 8 7 6 10 10 C 1.34773 * 120.63302 * 233.67613 * 9 8 7 11 11 O 1.21283 * 119.99890 * 359.97438 * 10 9 8 12 12 C 1.50700 * 120.00452 * 180.02562 * 10 9 8 13 13 C 1.52997 * 109.47382 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.46922 * 179.97438 * 13 12 10 15 15 C 1.50700 * 109.46708 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00796 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99794 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99929 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00114 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46952 * 90.00080 * 19 17 15 21 21 H 1.48501 * 109.46864 * 210.00340 * 19 17 15 22 22 H 1.48496 * 109.46938 * 329.99956 * 19 17 15 23 23 C 1.47207 * 118.55531 * 53.54119 * 9 8 7 24 24 C 1.53038 * 109.44764 * 295.06277 * 6 5 2 25 25 H 1.08999 * 109.46728 * 305.51916 * 1 2 3 26 26 H 1.08996 * 109.46881 * 65.51069 * 1 2 3 27 27 H 1.08993 * 109.47353 * 185.51809 * 1 2 3 28 28 H 1.08996 * 109.46972 * 59.99513 * 5 2 1 29 29 H 1.09004 * 109.46453 * 300.00022 * 5 2 1 30 30 H 1.09004 * 109.45591 * 55.02929 * 6 5 2 31 31 H 1.09003 * 109.49576 * 61.42048 * 7 6 5 32 32 H 1.09000 * 109.52700 * 301.34097 * 7 6 5 33 33 H 1.09002 * 109.58786 * 65.15336 * 8 7 6 34 34 H 1.08996 * 109.58870 * 185.43616 * 8 7 6 35 35 H 1.08998 * 109.46962 * 300.00024 * 12 10 9 36 36 H 1.09003 * 109.46750 * 59.99342 * 12 10 9 37 37 H 1.08998 * 109.47350 * 300.00103 * 13 12 10 38 38 H 1.09004 * 109.46747 * 60.00319 * 13 12 10 39 39 H 1.08998 * 109.47498 * 300.00388 * 14 13 12 40 40 H 1.08996 * 109.47166 * 60.00703 * 14 13 12 41 41 H 0.97001 * 119.99587 * 179.97438 * 18 17 15 42 42 H 1.08996 * 109.53610 * 186.67231 * 23 9 8 43 43 H 1.09002 * 109.68003 * 66.36699 * 23 9 8 44 44 H 1.09002 * 109.49557 * 298.57093 * 24 6 5 45 45 H 1.08996 * 109.50003 * 58.66990 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1887 -0.7357 1.6154 6 6 3.7054 -0.8196 1.7981 7 6 4.0220 -1.3235 3.2080 8 6 5.5411 -1.3736 3.3990 9 7 6.1291 -2.1856 2.3248 10 6 6.9381 -3.2241 2.6134 11 8 7.1875 -3.4957 3.7689 12 6 7.5340 -4.0471 1.5005 13 6 8.4068 -5.1539 2.0956 14 6 9.0112 -5.9898 0.9656 15 6 9.8713 -7.0796 1.5518 16 1 9.9761 -7.1675 2.6231 17 6 10.5238 -7.9651 0.7204 18 7 10.3958 -7.8585 -0.5842 19 14 11.5894 -9.3164 1.4470 20 1 10.7628 -10.5281 1.6785 21 1 12.6895 -9.6404 0.5035 22 1 12.1632 -8.8548 2.7365 23 6 5.8125 -1.8415 0.9290 24 6 4.2903 -1.7861 0.7657 25 1 -0.3633 0.5971 0.8364 26 1 -0.3633 0.4260 -0.9352 27 1 -0.3634 -1.0228 0.0988 28 1 1.7609 -1.7369 1.6666 29 1 1.7609 -0.1170 2.4043 30 1 4.1432 0.1689 1.6589 31 1 3.6056 -2.3223 3.3394 32 1 3.5850 -0.6476 3.9431 33 1 5.9481 -0.3632 3.3578 34 1 5.7734 -1.8220 4.3649 35 1 6.7338 -4.4930 0.9099 36 1 8.1437 -3.4077 0.8621 37 1 9.2070 -4.7077 2.6860 38 1 7.7973 -5.7934 2.7342 39 1 8.2107 -6.4360 0.3755 40 1 9.6205 -5.3507 0.3268 41 1 10.8551 -8.4813 -1.1690 42 1 6.2239 -2.6010 0.2641 43 1 6.2419 -0.8701 0.6839 44 1 3.8714 -2.7806 0.9201 45 1 4.0445 -1.4391 -0.2378 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159257484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:08 Heat of formation + Delta-G solvation = -155.169190 kcal Electronic energy + Delta-G solvation = -24686.271808 eV Core-core repulsion = 21022.234303 eV Total energy + Delta-G solvation = -3664.037504 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.27191 -38.92130 -37.92982 -36.97059 -36.15825 -35.12308 -34.06290 -32.20615 -30.63051 -29.98324 -29.08121 -26.08330 -24.55454 -24.19976 -22.33889 -21.38094 -19.95513 -19.71992 -18.53411 -18.05028 -17.59462 -17.05752 -16.87703 -16.82342 -16.74326 -16.44598 -15.46505 -15.42610 -15.02009 -14.70607 -14.61946 -14.28709 -14.12465 -13.94223 -13.87881 -13.78243 -13.56024 -13.11145 -13.03079 -12.96004 -12.94095 -12.64261 -12.51514 -12.41424 -12.31056 -12.20047 -12.02172 -11.86091 -11.59477 -11.57326 -11.45157 -11.22854 -10.94016 -10.70107 -10.54681 -9.67597 -8.20320 -6.30514 -0.86310 1.39229 1.40711 1.52278 1.60679 1.94524 1.99548 2.41588 2.77369 3.12450 3.16874 3.48681 3.58621 3.62514 3.86924 4.06207 4.11851 4.13844 4.19973 4.22157 4.28278 4.33400 4.43261 4.50445 4.57234 4.67122 4.77680 4.85369 4.89073 4.93826 4.97488 5.02188 5.06130 5.08823 5.15121 5.18270 5.34380 5.52512 5.60092 5.74243 5.85814 6.25802 6.35136 6.84737 7.17013 7.38060 8.91328 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024248 B = 0.002315 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.459495 B =12092.420598 C =12861.930163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.642 4.642 2 S 2.410 3.590 3 O -0.987 6.987 4 O -0.979 6.979 5 C -0.593 4.593 6 C -0.081 4.081 7 C -0.111 4.111 8 C 0.099 3.901 9 N -0.612 5.612 10 C 0.516 3.484 11 O -0.584 6.584 12 C -0.131 4.131 13 C -0.080 4.080 14 C 0.026 3.974 15 C -0.547 4.547 16 H 0.051 0.949 17 C 0.002 3.998 18 N -0.930 5.930 19 Si 0.963 3.037 20 H -0.271 1.271 21 H -0.278 1.278 22 H -0.268 1.268 23 C 0.098 3.902 24 C -0.165 4.165 25 H 0.154 0.846 26 H 0.131 0.869 27 H 0.151 0.849 28 H 0.157 0.843 29 H 0.169 0.831 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.106 0.894 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.001 0.999 40 H 0.000 1.000 41 H 0.265 0.735 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.078 0.922 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.739 20.550 3.242 33.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.795 4.795 2 S 2.599 3.401 3 O -0.984 6.984 4 O -0.976 6.976 5 C -0.724 4.724 6 C -0.101 4.101 7 C -0.150 4.150 8 C -0.023 4.023 9 N -0.345 5.345 10 C 0.306 3.694 11 O -0.464 6.464 12 C -0.171 4.171 13 C -0.119 4.119 14 C -0.011 4.011 15 C -0.585 4.585 16 H 0.070 0.930 17 C -0.196 4.196 18 N -0.570 5.570 19 Si 0.788 3.212 20 H -0.196 1.196 21 H -0.203 1.203 22 H -0.193 1.193 23 C -0.024 4.024 24 C -0.204 4.204 25 H 0.172 0.828 26 H 0.150 0.850 27 H 0.170 0.830 28 H 0.175 0.825 29 H 0.187 0.813 30 H 0.110 0.890 31 H 0.085 0.915 32 H 0.124 0.876 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.019 0.981 40 H 0.018 0.982 41 H 0.074 0.926 42 H 0.113 0.887 43 H 0.105 0.895 44 H 0.096 0.904 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -24.974 20.666 2.993 32.553 hybrid contribution 0.291 -1.135 0.585 1.310 sum -24.683 19.530 3.578 31.678 Atomic orbital electron populations 1.30121 1.22374 1.13775 1.13208 1.07763 0.79779 0.74452 0.78110 1.93552 1.80926 1.36603 1.87351 1.93545 1.80279 1.67286 1.56537 1.30278 1.03869 1.15989 1.22261 1.20929 0.92059 1.00508 0.96577 1.21887 0.94012 1.02857 0.96286 1.21771 0.94218 0.95400 0.90945 1.48314 1.47409 1.30229 1.08550 1.21028 0.77953 0.80240 0.90179 1.90639 1.61988 1.70437 1.23383 1.21710 1.00825 0.97540 0.96992 1.21156 0.97388 0.95483 0.97835 1.19014 0.94603 0.93838 0.93610 1.21679 1.29258 1.14421 0.93169 0.93038 1.25934 0.98100 1.00322 0.95245 1.70075 1.44565 1.38635 1.03703 0.85476 0.78373 0.79028 0.78348 1.19619 1.20276 1.19275 1.22024 0.96309 1.03024 0.81070 1.22543 0.95184 1.01587 1.01039 0.82794 0.84999 0.83047 0.82515 0.81325 0.88976 0.91482 0.87561 0.90026 0.90759 0.87729 0.87785 0.94152 0.94070 0.98101 0.98168 0.92641 0.88710 0.89488 0.90369 0.88129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -0.44 10.62 113.37 1.20 0.77 16 2 S 2.41 21.86 5.16 -56.49 -0.29 21.56 16 3 O -0.99 -17.47 18.10 -127.37 -2.30 -19.78 16 4 O -0.98 -17.40 15.43 -127.37 -1.97 -19.37 16 5 C -0.59 -2.45 5.26 71.98 0.38 -2.07 16 6 C -0.08 -0.93 2.15 -10.77 -0.02 -0.95 16 7 C -0.11 -1.39 5.36 30.67 0.16 -1.23 16 8 C 0.10 1.95 6.42 86.36 0.55 2.51 16 9 N -0.61 -15.09 2.98 -818.19 -2.44 -17.53 16 10 C 0.52 17.41 7.70 87.66 0.68 18.08 16 11 O -0.58 -24.42 15.39 -3.04 -0.05 -24.46 16 12 C -0.13 -4.55 4.05 29.85 0.12 -4.43 16 13 C -0.08 -3.67 4.44 30.59 0.14 -3.54 16 14 C 0.03 1.44 4.97 29.85 0.15 1.59 16 15 C -0.55 -32.78 9.11 25.60 0.23 -32.55 16 16 H 0.05 3.05 7.74 -2.91 -0.02 3.02 16 17 C 0.00 0.11 5.46 84.65 0.46 0.57 16 18 N -0.93 -57.26 13.29 21.45 0.28 -56.98 16 19 Si 0.96 45.78 29.54 68.60 2.03 47.81 16 20 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 21 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 22 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 23 C 0.10 1.90 6.35 86.31 0.55 2.45 16 24 C -0.17 -2.68 5.04 30.67 0.15 -2.53 16 25 H 0.15 -0.64 8.14 -2.39 -0.02 -0.66 16 26 H 0.13 0.16 8.14 -2.39 -0.02 0.14 16 27 H 0.15 -0.48 8.14 -2.39 -0.02 -0.50 16 28 H 0.16 0.03 8.14 -2.39 -0.02 0.01 16 29 H 0.17 -0.44 8.14 -2.39 -0.02 -0.46 16 30 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.07 1.81 7.00 -2.39 -0.02 1.79 16 35 H 0.10 3.27 7.70 -2.39 -0.02 3.25 16 36 H 0.10 3.27 7.96 -2.39 -0.02 3.25 16 37 H 0.04 1.92 8.10 -2.39 -0.02 1.90 16 38 H 0.04 1.95 8.10 -2.39 -0.02 1.93 16 39 H 0.00 0.03 8.14 -2.39 -0.02 0.02 16 40 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 41 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 42 H 0.09 1.88 5.97 -2.39 -0.01 1.87 16 43 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.10 1.73 5.32 -2.39 -0.01 1.72 16 Total: -1.00 -88.01 370.19 0.97 -87.04 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: 0.96 Total: 3.03 kcal Atomic # 6 Polarization: -26.08 SS G_CDS: 4.76 Total: -21.32 kcal Atomic # 7 Polarization: -72.36 SS G_CDS: -2.16 Total: -74.51 kcal Atomic # 8 Polarization: -59.29 SS G_CDS: -4.32 Total: -63.61 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Atomic # 16 Polarization: 21.86 SS G_CDS: -0.29 Total: 21.56 kcal Total: -88.01 0.97 -87.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159257484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.129 kcal (2) G-P(sol) polarization free energy of solvation -88.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds