Wall clock time and date at job start Tue Mar 31 2020 11:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.39586 * 123.87228 * 2 1 4 4 C 1.39118 * 130.70341 * 0.02562 * 3 2 1 5 5 C 1.39299 * 120.01341 * 179.97438 * 4 3 2 6 6 C 1.47868 * 119.96624 * 179.97438 * 5 4 3 7 7 O 1.21545 * 120.00442 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99362 * 179.97438 * 6 5 4 9 9 C 1.46508 * 119.99814 * 180.02562 * 8 6 5 10 10 C 1.52994 * 109.47225 * 180.02562 * 9 8 6 11 11 C 1.52998 * 109.47383 * 179.97438 * 10 9 8 12 12 N 1.46501 * 109.47436 * 179.97438 * 11 10 9 13 13 C 1.36938 * 119.99805 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00360 * 0.02562 * 13 12 11 15 15 C 1.38813 * 119.99810 * 180.02562 * 13 12 11 16 16 N 1.31621 * 119.99960 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00147 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46824 * 60.00449 * 17 15 13 19 19 H 1.48500 * 109.47391 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47119 * 300.00560 * 17 15 13 21 21 C 1.39614 * 120.06236 * 359.97438 * 5 4 3 22 22 C 1.38095 * 119.67959 * 0.02562 * 21 5 4 23 23 C 1.37848 * 120.11190 * 359.97438 * 22 21 5 24 24 C 1.51191 * 132.65154 * 180.02562 * 23 22 21 25 25 C 1.34355 * 123.87611 * 179.97438 * 2 1 3 26 26 O 1.21286 * 126.42512 * 0.02562 * 25 2 1 27 27 H 1.08996 * 109.47197 * 90.00515 * 1 2 3 28 28 H 1.09004 * 109.47121 * 209.99893 * 1 2 3 29 29 H 1.08997 * 109.47226 * 329.99882 * 1 2 3 30 30 H 1.07999 * 119.99683 * 359.97212 * 4 3 2 31 31 H 0.96998 * 120.00395 * 0.02562 * 8 6 5 32 32 H 1.09005 * 109.46618 * 300.00323 * 9 8 6 33 33 H 1.08998 * 109.46901 * 60.00106 * 9 8 6 34 34 H 1.09000 * 109.47190 * 300.00275 * 10 9 8 35 35 H 1.08998 * 109.47405 * 60.00034 * 10 9 8 36 36 H 1.09000 * 109.47329 * 300.00369 * 11 10 9 37 37 H 1.09006 * 109.46520 * 60.00041 * 11 10 9 38 38 H 0.97002 * 119.99780 * 0.02562 * 12 11 10 39 39 H 0.96997 * 120.00088 * 180.02562 * 16 15 13 40 40 H 1.07992 * 120.15827 * 180.29891 * 21 5 4 41 41 H 1.08002 * 119.94235 * 180.02562 * 22 21 5 42 42 H 1.08997 * 110.50318 * 298.64474 * 24 23 22 43 43 H 1.09003 * 110.50356 * 61.34618 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2430 1.1590 0.0000 4 6 1.8730 2.5000 0.0005 5 6 2.8504 3.4925 0.0009 6 6 2.4560 4.9176 0.0008 7 8 1.2794 5.2226 -0.0001 8 7 3.4012 5.8783 0.0018 9 6 3.0105 7.2903 0.0023 10 6 4.2647 8.1665 0.0026 11 6 3.8567 9.6411 0.0025 12 7 5.0577 10.4802 0.0035 13 6 4.9397 11.8444 0.0031 14 1 3.9614 12.3019 0.0024 15 6 6.0776 12.6394 0.0035 16 7 7.2699 12.0819 0.0038 17 14 5.9168 14.5005 0.0036 18 1 5.1765 14.9333 1.2160 19 1 7.2691 15.1143 0.0034 20 1 5.1770 14.9335 -1.2091 21 6 4.2021 3.1430 0.0014 22 6 4.5637 1.8102 0.0009 23 6 3.5940 0.8305 0.0005 24 6 3.6636 -0.6798 0.0004 25 6 2.2139 -1.1155 0.0005 26 8 1.8051 -2.2574 0.0006 27 1 -0.3633 -0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 0.8278 2.7718 0.0005 31 1 4.3402 5.6349 0.0021 32 1 2.4188 7.5038 -0.8880 33 1 2.4180 7.5030 0.8921 34 1 4.8568 7.9530 0.8926 35 1 4.8569 7.9538 -0.8873 36 1 3.2648 9.8543 -0.8876 37 1 3.2643 9.8542 0.8924 38 1 5.9364 10.0693 0.0038 39 1 8.0651 12.6374 0.0044 40 1 4.9612 3.9111 0.0066 41 1 5.6081 1.5350 0.0017 42 1 4.1704 -1.0386 -0.8954 43 1 4.1699 -1.0387 0.8966 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161903626.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:05 Heat of formation + Delta-G solvation = -22.472508 kcal Electronic energy + Delta-G solvation = -24552.501496 eV Core-core repulsion = 20791.066952 eV Total energy + Delta-G solvation = -3761.434545 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.03365 -40.10403 -38.51856 -36.31855 -36.09443 -34.44169 -33.57357 -32.05653 -30.81345 -29.96301 -28.63950 -27.15818 -25.38945 -23.39482 -23.06809 -22.24515 -21.35530 -21.17294 -20.06526 -18.24970 -17.36138 -17.08725 -16.86604 -16.81609 -16.14712 -15.74345 -15.42596 -14.89369 -14.54295 -14.52840 -14.49512 -14.22051 -14.12300 -13.83551 -13.50856 -13.29722 -13.04377 -12.91359 -12.69754 -12.63026 -12.37355 -11.71250 -11.60819 -11.00377 -10.95344 -10.90402 -10.82829 -10.66291 -10.64915 -10.21149 -10.04643 -9.72629 -9.44649 -9.13519 -8.89731 -8.48674 -6.96057 -5.79371 -3.08403 0.30114 0.71411 1.87977 2.17097 2.58787 2.96968 3.42944 3.43288 3.47472 3.48591 3.56847 3.78850 4.23513 4.38277 4.52306 4.56981 4.64851 4.73265 4.78934 4.80850 4.87804 5.05045 5.15450 5.16838 5.24804 5.25651 5.45510 5.55104 5.57252 5.75016 5.79655 5.92194 5.97573 6.01065 6.09760 6.15247 6.28245 6.34655 6.51045 6.75115 6.79390 7.32979 7.36147 7.67686 8.01163 8.39613 9.50737 10.07479 10.42112 11.43508 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.040434 B = 0.001760 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.324052 B =15904.012805 C =16559.912508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.552 5.552 3 C 0.134 3.866 4 C -0.078 4.078 5 C -0.095 4.095 6 C 0.555 3.445 7 O -0.536 6.536 8 N -0.719 5.719 9 C 0.122 3.878 10 C -0.138 4.138 11 C 0.156 3.844 12 N -0.733 5.733 13 C -0.242 4.242 14 H 0.071 0.929 15 C -0.014 4.014 16 N -0.935 5.935 17 Si 0.909 3.091 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.286 1.286 21 C -0.104 4.104 22 C -0.071 4.071 23 C -0.121 4.121 24 C -0.115 4.115 25 C 0.525 3.475 26 O -0.503 6.503 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.140 0.860 31 H 0.401 0.599 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.384 0.616 39 H 0.256 0.744 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.127 0.873 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.238 -27.723 0.072 28.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.275 5.275 3 C 0.038 3.962 4 C -0.100 4.100 5 C -0.099 4.099 6 C 0.342 3.658 7 O -0.414 6.414 8 N -0.370 5.370 9 C -0.002 4.002 10 C -0.176 4.176 11 C 0.028 3.972 12 N -0.378 5.378 13 C -0.373 4.373 14 H 0.089 0.911 15 C -0.210 4.210 16 N -0.583 5.583 17 Si 0.740 3.260 18 H -0.212 1.212 19 H -0.217 1.217 20 H -0.212 1.212 21 C -0.124 4.124 22 C -0.089 4.089 23 C -0.124 4.124 24 C -0.154 4.154 25 C 0.315 3.685 26 O -0.377 6.377 27 H 0.087 0.913 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.158 0.842 31 H 0.237 0.763 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.217 0.783 39 H 0.066 0.934 40 H 0.155 0.845 41 H 0.156 0.844 42 H 0.145 0.855 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.522 -28.018 0.072 29.286 hybrid contribution 0.621 0.909 -0.012 1.101 sum -7.901 -27.109 0.060 28.237 Atomic orbital electron populations 1.21893 0.77083 1.04373 1.03280 1.45745 1.07556 1.05324 1.68846 1.18001 0.90306 0.87355 1.00526 1.20364 1.00761 0.88254 1.00634 1.19658 0.93535 0.93036 1.03669 1.18137 0.85742 0.85071 0.76864 1.90788 1.17613 1.83314 1.49691 1.45988 1.09665 1.06866 1.74513 1.21424 0.97879 0.78101 1.02750 1.21954 0.96477 0.96408 1.02811 1.20520 0.91050 0.87374 0.98262 1.42321 1.02914 1.02890 1.89650 1.19203 0.92701 0.82514 1.42847 0.91131 1.24753 0.95223 0.98102 1.02933 1.69646 0.96675 1.34276 1.57719 0.86238 0.76502 0.85373 0.77897 1.21222 1.21664 1.21227 1.21282 0.94882 0.96446 0.99799 1.20221 0.99087 0.90969 0.98636 1.20019 0.92659 0.95071 1.04677 1.21125 0.95449 0.92225 1.06641 1.20630 0.88933 0.83922 0.75029 1.90799 1.78932 1.18843 1.49172 0.91255 0.89652 0.89897 0.84201 0.76333 0.91059 0.91054 0.91196 0.91201 0.96017 0.96021 0.78296 0.93446 0.84487 0.84356 0.85498 0.85502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.46 10.76 59.85 0.64 1.11 16 2 N -0.55 -4.47 3.13 -120.65 -0.38 -4.85 16 3 C 0.13 1.08 6.69 -83.71 -0.56 0.52 16 4 C -0.08 -0.71 9.28 -38.86 -0.36 -1.07 16 5 C -0.10 -0.88 5.86 -105.05 -0.62 -1.49 16 6 C 0.56 6.60 7.77 -12.32 -0.10 6.50 16 7 O -0.54 -8.30 16.32 5.33 0.09 -8.22 16 8 N -0.72 -7.59 5.51 -61.24 -0.34 -7.93 16 9 C 0.12 1.54 5.67 -4.04 -0.02 1.52 16 10 C -0.14 -1.98 5.44 -26.74 -0.15 -2.12 16 11 C 0.16 3.01 6.26 -4.04 -0.03 2.98 16 12 N -0.73 -18.26 5.60 -59.91 -0.34 -18.60 16 13 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 14 H 0.07 1.91 7.83 -52.48 -0.41 1.49 16 15 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 16 N -0.93 -27.92 13.06 55.49 0.72 -27.20 16 17 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 C -0.10 -0.69 9.55 -39.12 -0.37 -1.06 16 22 C -0.07 -0.39 10.02 -39.78 -0.40 -0.79 16 23 C -0.12 -0.79 6.35 -104.23 -0.66 -1.46 16 24 C -0.12 -0.62 6.88 -28.46 -0.20 -0.82 16 25 C 0.53 4.61 8.23 -10.84 -0.09 4.52 16 26 O -0.50 -6.01 17.67 5.55 0.10 -5.91 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.52 7.95 -51.93 -0.41 0.10 16 29 H 0.08 0.41 7.60 -51.93 -0.39 0.02 16 30 H 0.14 1.29 7.25 -52.49 -0.38 0.90 16 31 H 0.40 3.15 6.49 -40.82 -0.27 2.88 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.38 9.90 7.67 -40.82 -0.31 9.59 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.14 0.62 6.39 -52.49 -0.34 0.28 16 41 H 0.14 0.40 8.06 -52.49 -0.42 -0.02 16 42 H 0.13 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.13 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 367.26 15.07 5.53 5.53 Total: -1.00 -35.49 367.26 -8.65 -44.15 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -5.88 Total: 4.84 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -3.15 Total: 0.95 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: -0.33 Total: -58.57 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: 0.19 Total: -14.12 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.49 -8.65 -44.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161903626.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.674 kcal (2) G-P(sol) polarization free energy of solvation -35.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds