Wall clock time and date at job start Tue Mar 31 2020 11:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.39586 * 123.87228 * 2 1 4 4 C 1.39118 * 130.70341 * 0.02562 * 3 2 1 5 5 C 1.39299 * 120.01341 * 179.97438 * 4 3 2 6 6 C 1.47868 * 119.96624 * 179.97438 * 5 4 3 7 7 O 1.21545 * 120.00442 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99362 * 179.97438 * 6 5 4 9 9 C 1.46508 * 119.99814 * 180.02562 * 8 6 5 10 10 C 1.52994 * 109.47225 * 180.02562 * 9 8 6 11 11 C 1.52998 * 109.47383 * 179.97438 * 10 9 8 12 12 N 1.46501 * 109.47436 * 179.97438 * 11 10 9 13 13 C 1.36938 * 119.99805 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00360 * 0.02562 * 13 12 11 15 15 C 1.38813 * 119.99810 * 180.02562 * 13 12 11 16 16 N 1.31621 * 119.99960 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00147 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46824 * 60.00449 * 17 15 13 19 19 H 1.48500 * 109.47391 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47119 * 300.00560 * 17 15 13 21 21 C 1.39614 * 120.06236 * 359.97438 * 5 4 3 22 22 C 1.38095 * 119.67959 * 0.02562 * 21 5 4 23 23 C 1.37848 * 120.11190 * 359.97438 * 22 21 5 24 24 C 1.51191 * 132.65154 * 180.02562 * 23 22 21 25 25 C 1.34355 * 123.87611 * 179.97438 * 2 1 3 26 26 O 1.21286 * 126.42512 * 0.02562 * 25 2 1 27 27 H 1.08996 * 109.47197 * 90.00515 * 1 2 3 28 28 H 1.09004 * 109.47121 * 209.99893 * 1 2 3 29 29 H 1.08997 * 109.47226 * 329.99882 * 1 2 3 30 30 H 1.07999 * 119.99683 * 359.97212 * 4 3 2 31 31 H 0.96998 * 120.00395 * 0.02562 * 8 6 5 32 32 H 1.09005 * 109.46618 * 300.00323 * 9 8 6 33 33 H 1.08998 * 109.46901 * 60.00106 * 9 8 6 34 34 H 1.09000 * 109.47190 * 300.00275 * 10 9 8 35 35 H 1.08998 * 109.47405 * 60.00034 * 10 9 8 36 36 H 1.09000 * 109.47329 * 300.00369 * 11 10 9 37 37 H 1.09006 * 109.46520 * 60.00041 * 11 10 9 38 38 H 0.97002 * 119.99780 * 0.02562 * 12 11 10 39 39 H 0.96997 * 120.00088 * 180.02562 * 16 15 13 40 40 H 1.07992 * 120.15827 * 180.29891 * 21 5 4 41 41 H 1.08002 * 119.94235 * 180.02562 * 22 21 5 42 42 H 1.08997 * 110.50318 * 298.64474 * 24 23 22 43 43 H 1.09003 * 110.50356 * 61.34618 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2430 1.1590 0.0000 4 6 1.8730 2.5000 0.0005 5 6 2.8504 3.4925 0.0009 6 6 2.4560 4.9176 0.0008 7 8 1.2794 5.2226 -0.0001 8 7 3.4012 5.8783 0.0018 9 6 3.0105 7.2903 0.0023 10 6 4.2647 8.1665 0.0026 11 6 3.8567 9.6411 0.0025 12 7 5.0577 10.4802 0.0035 13 6 4.9397 11.8444 0.0031 14 1 3.9614 12.3019 0.0024 15 6 6.0776 12.6394 0.0035 16 7 7.2699 12.0819 0.0038 17 14 5.9168 14.5005 0.0036 18 1 5.1765 14.9333 1.2160 19 1 7.2691 15.1143 0.0034 20 1 5.1770 14.9335 -1.2091 21 6 4.2021 3.1430 0.0014 22 6 4.5637 1.8102 0.0009 23 6 3.5940 0.8305 0.0005 24 6 3.6636 -0.6798 0.0004 25 6 2.2139 -1.1155 0.0005 26 8 1.8051 -2.2574 0.0006 27 1 -0.3633 -0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 0.8278 2.7718 0.0005 31 1 4.3402 5.6349 0.0021 32 1 2.4188 7.5038 -0.8880 33 1 2.4180 7.5030 0.8921 34 1 4.8568 7.9530 0.8926 35 1 4.8569 7.9538 -0.8873 36 1 3.2648 9.8543 -0.8876 37 1 3.2643 9.8542 0.8924 38 1 5.9364 10.0693 0.0038 39 1 8.0651 12.6374 0.0044 40 1 4.9612 3.9111 0.0066 41 1 5.6081 1.5350 0.0017 42 1 4.1704 -1.0386 -0.8954 43 1 4.1699 -1.0387 0.8966 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161903626.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:04 Heat of formation + Delta-G solvation = -46.946970 kcal Electronic energy + Delta-G solvation = -24553.562789 eV Core-core repulsion = 20791.066952 eV Total energy + Delta-G solvation = -3762.495837 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.62032 -40.97590 -39.24436 -37.51536 -36.93493 -35.94401 -34.18018 -33.69678 -31.52530 -31.28594 -29.51118 -27.67473 -26.91747 -24.76399 -23.71431 -23.31119 -22.55812 -21.91255 -20.91195 -19.27624 -18.77598 -17.98660 -17.60701 -17.44616 -17.06323 -16.82114 -16.60710 -16.04332 -15.63737 -15.48781 -15.26438 -15.10785 -15.07169 -14.68297 -14.59712 -14.49000 -14.22668 -13.83780 -13.44049 -13.31134 -13.09315 -13.05078 -12.77549 -12.59483 -12.40336 -12.19856 -12.07898 -12.02542 -11.78309 -11.50475 -11.35770 -11.07693 -10.91843 -10.22577 -9.90022 -9.07884 -8.99592 -7.94956 -5.23694 -0.31158 0.14341 1.27558 1.49262 1.51894 1.57989 1.59785 1.81409 2.09963 2.57774 2.77400 3.03943 3.28729 3.38839 3.66711 3.73809 3.77556 3.99168 4.11255 4.11771 4.19515 4.30672 4.31978 4.35984 4.48207 4.49464 4.65920 4.73229 4.75563 4.76076 4.78323 4.87042 4.92335 5.22881 5.24100 5.28725 5.34605 5.38560 5.45021 5.50569 5.58309 5.94017 6.27911 6.49571 6.73903 7.14178 7.34625 8.09756 8.33576 9.28156 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.040434 B = 0.001760 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.324052 B =15904.012805 C =16559.912508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.556 5.556 3 C 0.117 3.883 4 C -0.088 4.088 5 C -0.113 4.113 6 C 0.555 3.445 7 O -0.581 6.581 8 N -0.707 5.707 9 C 0.132 3.868 10 C -0.118 4.118 11 C 0.151 3.849 12 N -0.746 5.746 13 C -0.251 4.251 14 H 0.074 0.926 15 C -0.074 4.074 16 N -0.967 5.967 17 Si 0.974 3.026 18 H -0.279 1.279 19 H -0.294 1.294 20 H -0.279 1.279 21 C -0.095 4.095 22 C -0.062 4.062 23 C -0.111 4.111 24 C -0.106 4.106 25 C 0.515 3.485 26 O -0.545 6.545 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.126 0.874 31 H 0.417 0.583 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.021 0.979 37 H 0.021 0.979 38 H 0.376 0.624 39 H 0.252 0.748 40 H 0.162 0.838 41 H 0.176 0.824 42 H 0.151 0.849 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.763 -28.386 0.065 28.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.278 5.278 3 C 0.021 3.979 4 C -0.110 4.110 5 C -0.117 4.117 6 C 0.343 3.657 7 O -0.463 6.463 8 N -0.359 5.359 9 C 0.008 3.992 10 C -0.157 4.157 11 C 0.024 3.976 12 N -0.389 5.389 13 C -0.383 4.383 14 H 0.092 0.908 15 C -0.266 4.266 16 N -0.617 5.617 17 Si 0.802 3.198 18 H -0.205 1.205 19 H -0.220 1.220 20 H -0.205 1.205 21 C -0.114 4.114 22 C -0.079 4.079 23 C -0.114 4.114 24 C -0.144 4.144 25 C 0.307 3.693 26 O -0.422 6.422 27 H 0.093 0.907 28 H 0.102 0.898 29 H 0.109 0.891 30 H 0.144 0.856 31 H 0.255 0.745 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.039 0.961 37 H 0.039 0.961 38 H 0.209 0.791 39 H 0.061 0.939 40 H 0.179 0.821 41 H 0.193 0.807 42 H 0.169 0.831 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -7.053 -28.678 0.065 29.533 hybrid contribution 0.109 1.072 -0.010 1.077 sum -6.944 -27.607 0.055 28.467 Atomic orbital electron populations 1.21994 0.76759 1.04679 1.03758 1.45907 1.08158 1.05461 1.68310 1.18068 0.91285 0.86856 1.01653 1.20295 1.00337 0.88941 1.01454 1.19482 0.94925 0.91151 1.06160 1.18559 0.85130 0.86264 0.75741 1.90762 1.19487 1.84121 1.51891 1.45794 1.10457 1.05755 1.73943 1.21142 0.96778 0.79098 1.02170 1.21704 0.97111 0.93297 1.03546 1.20689 0.89248 0.89725 0.97965 1.42516 1.04223 1.02610 1.89554 1.19610 0.92860 0.84185 1.41637 0.90803 1.25561 0.95042 1.02489 1.03532 1.69789 0.97143 1.35559 1.59243 0.85215 0.76237 0.80163 0.78157 1.20464 1.21965 1.20474 1.21582 0.93928 0.97818 0.98078 1.20594 1.00599 0.89921 0.96836 1.20312 0.91986 0.96001 1.03109 1.21204 0.93226 0.91158 1.08804 1.21231 0.90500 0.83376 0.74205 1.90773 1.79890 1.20272 1.51307 0.90742 0.89798 0.89132 0.85577 0.74497 0.91765 0.91748 0.90438 0.90451 0.96059 0.96060 0.79141 0.93899 0.82089 0.80654 0.83108 0.83095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.90 10.76 127.77 1.38 2.27 16 2 N -0.56 -8.83 3.13 -654.25 -2.05 -10.88 16 3 C 0.12 1.77 6.69 38.31 0.26 2.03 16 4 C -0.09 -1.58 9.28 22.74 0.21 -1.37 16 5 C -0.11 -1.95 5.86 -20.14 -0.12 -2.07 16 6 C 0.55 12.87 7.77 86.79 0.67 13.55 16 7 O -0.58 -18.44 16.32 -3.86 -0.06 -18.50 16 8 N -0.71 -13.82 5.51 -465.95 -2.57 -16.39 16 9 C 0.13 3.21 5.67 86.38 0.49 3.70 16 10 C -0.12 -3.21 5.44 30.59 0.17 -3.04 16 11 C 0.15 5.70 6.26 86.38 0.54 6.24 16 12 N -0.75 -36.88 5.60 -343.44 -1.92 -38.80 16 13 C -0.25 -13.92 9.99 84.03 0.84 -13.08 16 14 H 0.07 3.95 7.83 -2.91 -0.02 3.92 16 15 C -0.07 -4.18 5.50 84.86 0.47 -3.72 16 16 N -0.97 -57.88 13.06 21.65 0.28 -57.60 16 17 Si 0.97 45.50 29.55 68.60 2.03 47.53 16 18 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 19 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 21 C -0.09 -0.94 9.55 22.57 0.22 -0.73 16 22 C -0.06 -0.42 10.02 22.14 0.22 -0.20 16 23 C -0.11 -1.12 6.35 -19.61 -0.12 -1.25 16 24 C -0.11 -0.82 6.88 29.47 0.20 -0.62 16 25 C 0.52 8.60 8.23 87.94 0.72 9.32 16 26 O -0.54 -13.03 17.67 -3.05 -0.05 -13.08 16 27 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.08 1.09 7.95 -2.39 -0.02 1.07 16 29 H 0.09 0.99 7.60 -2.39 -0.02 0.97 16 30 H 0.13 2.50 7.25 -2.91 -0.02 2.48 16 31 H 0.42 5.39 6.49 -92.71 -0.60 4.79 16 32 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 33 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 38 H 0.38 19.37 7.67 -92.71 -0.71 18.66 16 39 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 40 H 0.16 0.77 6.39 -2.91 -0.02 0.75 16 41 H 0.18 -0.03 8.06 -2.91 -0.02 -0.05 16 42 H 0.15 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.15 0.53 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -77.76 367.26 1.53 -76.23 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: -0.26 Total: 20.45 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 6.14 Total: 11.03 kcal Atomic # 7 Polarization: -117.40 SS G_CDS: -6.26 Total: -123.66 kcal Atomic # 8 Polarization: -31.47 SS G_CDS: -0.12 Total: -31.59 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -77.76 1.53 -76.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161903626.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.281 kcal (2) G-P(sol) polarization free energy of solvation -77.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds