Wall clock time and date at job start Tue Mar 31 2020 11:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.36034 * 116.99716 * 2 1 4 4 C 1.38580 * 120.00833 * 0.02562 * 3 2 1 5 5 C 1.38159 * 120.06501 * 179.97438 * 4 3 2 6 6 C 1.50703 * 119.96028 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.46742 * 266.32596 * 6 5 4 8 8 H 1.07999 * 120.00156 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99987 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99674 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00051 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47072 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47256 * 119.99778 * 11 9 7 14 14 H 1.48501 * 109.47050 * 239.99530 * 11 9 7 15 15 C 1.38826 * 120.08016 * 359.97438 * 5 4 3 16 16 N 1.40291 * 119.99294 * 179.97438 * 15 5 4 17 17 N 1.40079 * 126.05423 * 308.99690 * 16 15 5 18 18 C 1.30896 * 108.22023 * 180.26098 * 17 16 15 19 19 C 1.39902 * 108.23561 * 0.02562 * 18 17 16 20 20 C 1.35197 * 126.04664 * 129.30778 * 16 15 5 21 21 C 1.50696 * 126.14703 * 359.75456 * 20 16 15 22 22 N 1.46902 * 109.47404 * 274.71847 * 21 20 16 23 23 C 1.38804 * 120.01569 * 0.26188 * 15 5 4 24 24 C 1.38486 * 119.92791 * 359.48780 * 23 15 5 25 25 O 1.35999 * 120.03568 * 180.23171 * 24 23 15 26 26 C 1.42897 * 117.00076 * 0.27523 * 25 24 23 27 27 H 1.09000 * 109.46994 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47291 * 300.00188 * 1 2 3 29 29 H 1.08999 * 109.46743 * 60.00467 * 1 2 3 30 30 H 1.08007 * 119.96762 * 359.94991 * 4 3 2 31 31 H 1.09001 * 109.47401 * 26.32247 * 6 5 4 32 32 H 1.08998 * 109.47639 * 146.32663 * 6 5 4 33 33 H 0.97006 * 119.99532 * 180.02562 * 10 9 7 34 34 H 1.08000 * 125.88320 * 179.97438 * 18 17 16 35 35 H 1.07997 * 126.03121 * 180.02562 * 19 18 17 36 36 H 1.09006 * 109.46862 * 34.71596 * 21 20 16 37 37 H 1.08994 * 109.47097 * 154.71683 * 21 20 16 38 38 H 1.00893 * 110.99929 * 179.97438 * 22 21 20 39 39 H 1.00900 * 110.99960 * 303.95601 * 22 21 20 40 40 H 1.07996 * 120.03781 * 179.73954 * 23 15 5 41 41 H 1.09001 * 109.47251 * 300.00023 * 26 25 24 42 42 H 1.09008 * 109.47087 * 59.99974 * 26 25 24 43 43 H 1.09004 * 109.47238 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0466 1.2121 0.0000 4 6 1.2919 2.3744 0.0005 5 6 1.9179 3.6061 0.0011 6 6 1.0949 4.8685 0.0011 7 6 0.8975 5.3394 -1.4168 8 1 1.3254 4.7806 -2.2359 9 6 0.1713 6.4841 -1.6683 10 7 -0.3495 7.1649 -0.6708 11 14 -0.0741 7.0673 -3.4259 12 1 0.6067 6.1323 -4.3573 13 1 -1.5257 7.1065 -3.7363 14 1 0.5021 8.4271 -3.5812 15 6 3.3041 3.6821 0.0016 16 7 3.9378 4.9337 0.0016 17 7 3.6747 5.9910 -0.8789 18 6 4.4664 6.9868 -0.5708 19 6 5.2589 6.5966 0.5141 20 6 4.9146 5.3309 0.8477 21 6 5.5133 4.5112 1.9616 22 7 4.6860 4.6460 3.1680 23 6 4.0632 2.5201 -0.0039 24 6 3.4363 1.2852 0.0008 25 8 4.1780 0.1453 0.0002 26 6 5.5990 0.2958 0.0007 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.2134 2.3174 0.0001 31 1 0.1247 4.6698 0.4563 32 1 1.6127 5.6399 0.5712 33 1 -0.8607 7.9700 -0.8477 34 1 4.5024 7.9444 -1.0688 35 1 6.0116 7.1993 1.0003 36 1 5.5510 3.4638 1.6621 37 1 6.5224 4.8657 2.1716 38 1 5.0666 4.1049 3.9297 39 1 4.5823 5.6152 3.4289 40 1 5.1416 2.5788 -0.0077 41 1 5.9065 0.8457 -0.8888 42 1 5.9060 0.8445 0.8912 43 1 6.0687 -0.6879 -0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162594031.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:07 Heat of formation + Delta-G solvation = 19.370510 kcal Electronic energy + Delta-G solvation = -27471.123389 eV Core-core repulsion = 23711.503294 eV Total energy + Delta-G solvation = -3759.620095 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.47809 -41.34847 -39.40901 -38.35416 -35.86300 -35.13779 -33.64983 -32.65898 -30.79168 -30.00849 -29.40386 -28.05747 -27.48778 -25.88020 -25.08711 -23.50437 -22.80296 -21.54935 -20.88257 -19.21507 -18.56663 -18.38496 -17.95409 -17.29225 -17.01989 -16.58718 -16.38918 -16.13828 -15.95096 -15.67010 -15.29563 -15.13657 -14.98141 -14.67220 -14.40847 -14.31909 -13.97945 -13.74622 -13.46701 -13.30134 -13.05939 -12.73480 -12.65388 -12.58502 -12.33474 -12.23050 -12.08446 -12.05543 -11.53498 -11.37439 -11.19302 -10.51745 -10.39959 -9.76958 -9.63751 -9.39514 -8.60262 -8.08969 -6.15535 0.02067 0.33029 1.15898 1.35760 1.37382 1.50096 1.68227 2.02602 2.31539 2.32963 2.42501 2.64046 3.22485 3.62021 3.69908 3.79996 3.99002 4.04473 4.09385 4.17338 4.25263 4.39696 4.41776 4.43063 4.44681 4.48083 4.58867 4.70634 4.75133 4.77330 4.80575 4.89366 5.11475 5.18772 5.25591 5.35329 5.45612 5.77343 5.79484 5.90105 6.05990 6.15716 6.23669 6.38908 6.58161 6.63349 6.87547 6.98574 7.47475 9.00276 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.009852 B = 0.006333 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2841.389627 B = 4420.337710 C = 6302.660723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.317 6.317 3 C 0.101 3.899 4 C -0.166 4.166 5 C -0.051 4.051 6 C 0.080 3.920 7 C -0.469 4.469 8 H 0.039 0.961 9 C 0.012 3.988 10 N -0.934 5.934 11 Si 0.952 3.048 12 H -0.273 1.273 13 H -0.277 1.277 14 H -0.280 1.280 15 C 0.135 3.865 16 N -0.310 5.310 17 N -0.278 5.278 18 C 0.011 3.989 19 C -0.263 4.263 20 C 0.066 3.934 21 C 0.130 3.870 22 N -0.857 5.857 23 C -0.160 4.160 24 C 0.096 3.904 25 O -0.317 6.317 26 C 0.015 3.985 27 H 0.130 0.870 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.143 0.857 31 H -0.003 1.003 32 H -0.003 1.003 33 H 0.259 0.741 34 H 0.194 0.806 35 H 0.177 0.823 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.361 0.639 39 H 0.348 0.652 40 H 0.160 0.840 41 H 0.057 0.943 42 H 0.067 0.933 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.086 -11.232 6.229 19.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.231 6.231 3 C 0.055 3.945 4 C -0.186 4.186 5 C -0.053 4.053 6 C 0.043 3.957 7 C -0.508 4.508 8 H 0.057 0.943 9 C -0.184 4.184 10 N -0.576 5.576 11 Si 0.778 3.222 12 H -0.198 1.198 13 H -0.203 1.203 14 H -0.206 1.206 15 C 0.044 3.956 16 N -0.088 5.088 17 N -0.096 5.096 18 C -0.176 4.176 19 C -0.293 4.293 20 C -0.059 4.059 21 C -0.002 4.002 22 N -0.391 5.391 23 C -0.181 4.181 24 C 0.049 3.951 25 O -0.231 6.231 26 C -0.079 4.079 27 H 0.148 0.852 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.161 0.839 31 H 0.016 0.984 32 H 0.015 0.985 33 H 0.068 0.932 34 H 0.211 0.789 35 H 0.195 0.805 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.176 0.824 39 H 0.161 0.839 40 H 0.178 0.822 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 12.478 -12.324 5.045 18.249 hybrid contribution 0.695 2.058 0.010 2.173 sum 13.173 -10.265 5.055 17.448 Atomic orbital electron populations 1.23352 0.76770 1.05684 1.01896 1.86098 1.22961 1.25056 1.88954 1.18292 0.89519 0.85110 1.01573 1.20882 1.00621 0.89948 1.07122 1.20168 0.92904 0.96504 0.95742 1.17824 0.92109 0.88996 0.96781 1.20867 1.30243 1.08383 0.91285 0.94269 1.25588 0.95864 0.96585 1.00405 1.70089 1.37164 1.17968 1.32387 0.85601 0.77614 0.78154 0.80864 1.19779 1.20312 1.20602 1.16910 0.90436 0.81971 1.06265 1.45639 1.28190 1.10175 1.24756 1.78155 1.20647 0.96044 1.14786 1.24435 0.94837 0.99375 0.98920 1.21519 1.08658 0.95873 1.03211 1.21685 0.92272 0.96665 0.95291 1.20412 0.94633 0.98589 0.86536 1.58465 1.56023 1.17153 1.07490 1.20806 1.00591 0.88908 1.07755 1.17713 0.88059 0.85708 1.03577 1.86148 1.20567 1.27071 1.89329 1.23399 0.76764 1.05746 1.02028 0.85185 0.92190 0.92710 0.83919 0.98446 0.98462 0.93184 0.78944 0.80540 0.89779 0.89589 0.82381 0.83899 0.82244 0.92464 0.91462 0.85532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.81 113.37 1.11 1.53 16 2 O -0.32 -10.23 10.28 -79.99 -0.82 -11.05 16 3 C 0.10 3.68 6.70 22.57 0.15 3.83 16 4 C -0.17 -6.81 8.67 22.33 0.19 -6.62 16 5 C -0.05 -2.41 5.09 -19.74 -0.10 -2.51 16 6 C 0.08 4.52 4.41 29.10 0.13 4.64 16 7 C -0.47 -27.94 7.65 25.60 0.20 -27.74 16 8 H 0.04 2.40 7.74 -2.91 -0.02 2.38 16 9 C 0.01 0.72 5.46 84.66 0.46 1.19 16 10 N -0.93 -58.41 13.29 21.45 0.28 -58.12 16 11 Si 0.95 47.30 29.54 68.60 2.03 49.32 16 12 H -0.27 -13.42 7.11 99.48 0.71 -12.71 16 13 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 14 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 15 C 0.14 5.70 6.01 38.06 0.23 5.93 16 16 N -0.31 -13.05 3.02 -175.95 -0.53 -13.58 16 17 N -0.28 -13.25 9.94 -56.97 -0.57 -13.81 16 18 C 0.01 0.43 12.03 85.24 1.03 1.45 16 19 C -0.26 -8.23 10.72 22.00 0.24 -8.00 16 20 C 0.07 2.18 6.30 41.37 0.26 2.44 16 21 C 0.13 2.98 6.92 85.56 0.59 3.58 16 22 N -0.86 -19.97 9.61 -190.01 -1.83 -21.80 16 23 C -0.16 -5.39 7.45 22.46 0.17 -5.22 16 24 C 0.10 3.22 6.70 22.55 0.15 3.38 16 25 O -0.32 -9.10 10.28 -79.58 -0.82 -9.92 16 26 C 0.01 0.26 9.81 113.37 1.11 1.38 16 27 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.06 1.40 7.66 -2.39 -0.02 1.38 16 29 H 0.05 1.36 7.66 -2.39 -0.02 1.34 16 30 H 0.14 5.54 6.29 -2.91 -0.02 5.52 16 31 H 0.00 -0.16 8.06 -2.39 -0.02 -0.18 16 32 H 0.00 -0.18 7.21 -2.39 -0.02 -0.19 16 33 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 34 H 0.19 6.34 8.06 -2.91 -0.02 6.32 16 35 H 0.18 3.98 8.06 -2.91 -0.02 3.96 16 36 H 0.08 1.86 5.64 -2.38 -0.01 1.85 16 37 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.36 5.96 9.08 -89.70 -0.81 5.14 16 39 H 0.35 7.94 8.99 -89.69 -0.81 7.13 16 40 H 0.16 4.29 5.21 -2.91 -0.02 4.27 16 41 H 0.06 0.98 7.65 -2.39 -0.02 0.96 16 42 H 0.07 0.99 7.67 -2.38 -0.02 0.98 16 43 H 0.13 1.50 8.14 -2.38 -0.02 1.48 16 Total: -1.00 -80.54 358.70 3.11 -77.43 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: -0.55 Total: 22.27 kcal Atomic # 6 Polarization: -26.65 SS G_CDS: 5.92 Total: -20.73 kcal Atomic # 7 Polarization: -104.68 SS G_CDS: -2.64 Total: -107.32 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -1.64 Total: -20.97 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.32 kcal Total: -80.54 3.11 -77.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162594031.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.800 kcal (2) G-P(sol) polarization free energy of solvation -80.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds