Wall clock time and date at job start Tue Mar 31 2020 11:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35970 * 117.00169 * 2 1 4 4 C 1.39413 * 119.81685 * 0.02562 * 3 2 1 5 5 C 1.38102 * 120.56916 * 179.72118 * 4 3 2 6 6 C 1.38712 * 120.19709 * 0.50852 * 5 4 3 7 7 N 1.38860 * 120.18246 * 179.76854 * 6 5 4 8 8 C 1.46497 * 119.99507 * 5.15869 * 7 6 5 9 9 C 1.49623 * 106.74770 * 68.04910 * 8 7 6 10 10 C 1.56027 * 102.75869 * 77.12085 * 9 8 7 11 11 N 1.50057 * 106.16735 * 5.00055 * 10 9 8 12 12 C 1.45385 * 103.33193 * 27.79047 * 11 10 9 13 13 H 1.09001 * 111.69232 * 71.38957 * 12 11 10 14 14 C 1.52339 * 122.60316 * 208.04387 * 12 11 10 15 15 C 1.55204 * 100.18681 * 145.79745 * 14 12 11 16 16 O 1.21284 * 125.25022 * 156.60862 * 15 14 12 17 17 N 1.37444 * 109.06902 * 337.37038 * 15 14 12 18 18 C 1.41539 * 119.63914 * 359.49618 * 6 5 4 19 19 C 1.41035 * 120.27891 * 180.27279 * 18 6 5 20 20 H 1.08004 * 119.99758 * 26.19479 * 19 18 6 21 21 C 1.39900 * 120.00195 * 206.19612 * 19 18 6 22 22 N 1.30893 * 119.99761 * 16.11672 * 21 19 18 23 23 Si 1.86804 * 120.00003 * 196.11697 * 21 19 18 24 24 H 1.48498 * 109.47014 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46887 * 120.00020 * 23 21 19 26 26 H 1.48497 * 109.46904 * 240.00120 * 23 21 19 27 27 C 1.37835 * 119.81905 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47234 * 59.99974 * 1 2 3 29 29 H 1.09000 * 109.47315 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47056 * 300.00102 * 1 2 3 31 31 H 1.08002 * 119.71554 * 359.97132 * 4 3 2 32 32 H 1.07999 * 119.89957 * 180.25503 * 5 4 3 33 33 H 0.97002 * 120.00209 * 185.16403 * 7 6 5 34 34 H 1.09003 * 110.75661 * 318.80218 * 9 8 7 35 35 H 1.09002 * 110.75728 * 195.43706 * 9 8 7 36 36 H 1.09002 * 110.11422 * 245.82966 * 10 9 8 37 37 H 1.08993 * 110.11773 * 124.18166 * 10 9 8 38 38 H 1.00900 * 111.00848 * 268.74519 * 11 10 9 39 39 H 1.09001 * 111.14066 * 264.04351 * 14 12 11 40 40 H 1.08996 * 111.14078 * 28.24901 * 14 12 11 41 41 H 0.97000 * 126.20312 * 171.45456 * 17 15 14 42 42 H 0.97003 * 119.99462 * 179.97438 * 22 21 19 43 43 H 1.07991 * 120.11490 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2833 2.3783 0.0005 5 6 1.8941 3.6169 0.0063 6 6 3.2779 3.7124 0.0011 7 7 3.8917 4.9580 0.0020 8 6 3.0824 6.1732 0.1227 9 6 2.5126 6.1761 1.5062 10 6 3.7261 6.6258 2.3777 11 7 4.8304 6.9571 1.4172 12 6 4.1192 7.3598 0.2148 13 1 3.6350 8.3285 0.3385 14 6 4.7089 7.1983 -1.1805 15 6 3.4208 6.8873 -1.9886 16 8 3.2817 7.0661 -3.1801 17 7 2.4630 6.3949 -1.1347 18 6 4.0609 2.5334 0.0005 19 6 5.4689 2.6148 0.0010 20 1 5.9594 3.4836 0.4146 21 6 6.2302 1.5702 -0.5343 22 7 5.6651 0.6784 -1.3080 23 14 8.0532 1.4483 -0.1449 24 1 8.4451 2.5700 0.7458 25 1 8.3287 0.1573 0.5351 26 1 8.8345 1.5205 -1.4057 27 6 3.4230 1.2792 0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2053 2.3130 0.0005 32 1 1.2925 4.5138 0.0109 33 1 4.8563 5.0235 -0.0773 34 1 2.1824 5.1768 1.7901 35 1 1.6940 6.8915 1.5853 36 1 4.0343 5.8151 3.0380 37 1 3.4615 7.5064 2.9629 38 1 5.4107 6.1507 1.2411 39 1 5.1835 8.1205 -1.5159 40 1 5.4078 6.3628 -1.2176 41 1 1.5322 6.2295 -1.3519 42 1 6.1931 -0.0457 -1.6794 43 1 4.0101 0.3728 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163252155.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:42 Heat of formation + Delta-G solvation = 10.135990 kcal Electronic energy + Delta-G solvation = -27933.259323 eV Core-core repulsion = 24173.238789 eV Total energy + Delta-G solvation = -3760.020534 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.71018 -38.67516 -38.04206 -36.54395 -34.66579 -33.64337 -32.34860 -31.36174 -29.66841 -28.50865 -27.86702 -26.03879 -25.34928 -25.00569 -21.68292 -21.11484 -20.67993 -20.43076 -19.68240 -17.70363 -17.27531 -16.68444 -16.44255 -15.96113 -15.61124 -15.15259 -14.89849 -14.75027 -14.48226 -14.28990 -14.04572 -13.69443 -13.19165 -13.12935 -12.73195 -12.44921 -12.28872 -12.19081 -11.85203 -11.54640 -11.40912 -11.36510 -11.19927 -11.09982 -11.00477 -10.64343 -10.63284 -10.33213 -10.04476 -9.86193 -9.59753 -9.20574 -9.18428 -8.72133 -8.46679 -7.48922 -6.79765 -6.14321 -4.30273 2.62846 2.72565 3.03193 3.06806 3.09673 3.16354 3.37043 3.56753 3.90712 4.26062 4.41319 4.54176 4.61291 4.63041 4.81545 4.91810 5.11960 5.27494 5.36666 5.59438 5.68806 5.73702 5.76020 5.79356 5.88807 5.91815 5.93656 6.02914 6.14055 6.29057 6.54009 6.77369 6.85922 6.98255 7.07600 7.13156 7.26608 7.34576 7.44151 7.52324 7.80295 7.96431 8.13596 8.37382 8.47831 8.59631 8.77525 8.85077 8.99876 10.19703 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.009592 B = 0.006378 C = 0.004740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2918.329148 B = 4389.357745 C = 5905.699144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.331 6.331 3 C 0.097 3.903 4 C -0.280 4.280 5 C -0.138 4.138 6 C 0.090 3.910 7 N -0.757 5.757 8 C 0.331 3.669 9 C -0.136 4.136 10 C 0.054 3.946 11 N -0.649 5.649 12 C 0.044 3.956 13 H 0.112 0.888 14 C -0.137 4.137 15 C 0.537 3.463 16 O -0.522 6.522 17 N -0.710 5.710 18 C 0.102 3.898 19 C -0.463 4.463 20 H 0.073 0.927 21 C 0.077 3.923 22 N -0.788 5.788 23 Si 0.904 3.096 24 H -0.261 1.261 25 H -0.273 1.273 26 H -0.276 1.276 27 C -0.171 4.171 28 H 0.042 0.958 29 H 0.080 0.920 30 H 0.042 0.958 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.390 0.610 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.347 0.653 39 H 0.103 0.897 40 H 0.110 0.890 41 H 0.406 0.594 42 H 0.280 0.720 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.853 8.677 6.084 11.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.246 6.246 3 C 0.053 3.947 4 C -0.301 4.301 5 C -0.161 4.161 6 C -0.008 4.008 7 N -0.402 5.402 8 C 0.155 3.845 9 C -0.176 4.176 10 C -0.075 4.075 11 N -0.278 5.278 12 C -0.069 4.069 13 H 0.130 0.870 14 C -0.178 4.178 15 C 0.323 3.677 16 O -0.396 6.396 17 N -0.368 5.368 18 C 0.098 3.902 19 C -0.493 4.493 20 H 0.092 0.908 21 C -0.141 4.141 22 N -0.413 5.413 23 Si 0.728 3.272 24 H -0.184 1.184 25 H -0.198 1.198 26 H -0.201 1.201 27 C -0.192 4.192 28 H 0.061 0.939 29 H 0.099 0.901 30 H 0.060 0.940 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.229 0.771 34 H 0.117 0.883 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.166 0.834 39 H 0.121 0.879 40 H 0.128 0.872 41 H 0.245 0.755 42 H 0.091 0.909 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.590 9.175 5.594 11.329 hybrid contribution -0.051 -1.168 -0.533 1.285 sum -3.641 8.007 5.061 10.148 Atomic orbital electron populations 1.22701 0.81149 1.01633 1.00232 1.86008 1.19123 1.29150 1.90310 1.18827 0.92416 0.82407 1.01070 1.20191 0.96957 0.92233 1.20732 1.19714 0.92133 0.95310 1.08945 1.17699 0.90968 0.84930 1.07177 1.45218 1.07700 1.02015 1.85220 1.20381 0.90210 0.87817 0.86131 1.22313 0.99034 1.04186 0.92111 1.23474 0.88454 1.00501 0.95102 1.62867 1.17781 1.38738 1.08441 1.23509 0.94604 0.98475 0.90320 0.87043 1.22702 0.96638 1.04900 0.93600 1.22447 0.85174 0.74111 0.85931 1.90711 1.81574 1.53327 1.13956 1.45874 1.12233 1.66629 1.12080 1.16954 0.92749 0.88495 0.92040 1.19113 0.90721 1.03671 1.35779 0.90848 1.25818 1.00791 0.94769 0.92770 1.69863 1.38191 1.11478 1.21788 0.86335 0.82343 0.79368 0.79116 1.18434 1.19806 1.20144 1.20334 0.89259 0.98680 1.10932 0.93943 0.90123 0.93968 0.89005 0.89587 0.77089 0.88349 0.90865 0.90298 0.90066 0.83436 0.87857 0.87185 0.75494 0.90941 0.85660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 9.81 101.05 0.99 1.63 16 2 O -0.33 -7.35 10.49 -19.65 -0.21 -7.55 16 3 C 0.10 2.32 6.67 -39.29 -0.26 2.06 16 4 C -0.28 -6.07 9.03 -39.19 -0.35 -6.42 16 5 C -0.14 -2.82 7.80 -39.46 -0.31 -3.13 16 6 C 0.09 1.91 6.16 -83.25 -0.51 1.40 16 7 N -0.76 -13.03 3.55 -49.34 -0.18 -13.21 16 8 C 0.33 4.57 1.12 -195.31 -0.22 4.35 16 9 C -0.14 -1.65 5.70 -26.78 -0.15 -1.81 16 10 C 0.05 0.60 7.46 -0.43 0.00 0.59 16 11 N -0.65 -7.69 7.52 -101.15 -0.76 -8.45 16 12 C 0.04 0.52 3.75 -66.21 -0.25 0.27 16 13 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 14 C -0.14 -1.79 6.49 -25.90 -0.17 -1.96 16 15 C 0.54 8.81 8.30 -7.44 -0.06 8.74 16 16 O -0.52 -10.48 18.03 5.55 0.10 -10.38 16 17 N -0.71 -10.50 5.48 -49.88 -0.27 -10.77 16 18 C 0.10 2.52 5.57 -106.65 -0.59 1.92 16 19 C -0.46 -11.16 8.44 -37.90 -0.32 -11.48 16 20 H 0.07 1.63 6.78 -52.48 -0.36 1.28 16 21 C 0.08 1.85 5.16 -17.33 -0.09 1.76 16 22 N -0.79 -20.19 10.97 55.55 0.61 -19.59 16 23 Si 0.90 18.03 29.59 -169.99 -5.03 13.00 16 24 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 25 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 26 H -0.28 -5.53 7.11 56.52 0.40 -5.12 16 27 C -0.17 -4.42 8.59 -38.80 -0.33 -4.76 16 28 H 0.04 0.67 7.65 -51.93 -0.40 0.27 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.04 0.64 7.65 -51.93 -0.40 0.24 16 31 H 0.09 1.78 6.26 -52.49 -0.33 1.45 16 32 H 0.09 1.54 5.60 -52.49 -0.29 1.25 16 33 H 0.39 6.79 3.64 -40.82 -0.15 6.64 16 34 H 0.10 1.42 5.99 -51.93 -0.31 1.11 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.35 4.49 6.91 -39.29 -0.27 4.22 16 39 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.11 1.53 6.63 -51.93 -0.34 1.18 16 41 H 0.41 5.75 8.49 -40.82 -0.35 5.40 16 42 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 43 H 0.13 3.47 6.22 -52.49 -0.33 3.14 16 LS Contribution 335.99 15.07 5.06 5.06 Total: -1.00 -29.31 335.99 -8.50 -37.81 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: -5.19 Total: 20.91 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -2.64 Total: -6.83 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: -0.60 Total: -52.01 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.11 Total: -17.93 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.31 -8.50 -37.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163252155.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.947 kcal (2) G-P(sol) polarization free energy of solvation -29.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds