Wall clock time and date at job start Tue Mar 31 2020 11:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35970 * 117.00169 * 2 1 4 4 C 1.39413 * 119.81685 * 0.02562 * 3 2 1 5 5 C 1.38102 * 120.56916 * 179.72118 * 4 3 2 6 6 C 1.38712 * 120.19709 * 0.50852 * 5 4 3 7 7 N 1.38860 * 120.18246 * 179.76854 * 6 5 4 8 8 C 1.46497 * 119.99507 * 5.15869 * 7 6 5 9 9 C 1.49623 * 106.74770 * 68.04910 * 8 7 6 10 10 C 1.56027 * 102.75869 * 77.12085 * 9 8 7 11 11 N 1.50057 * 106.16735 * 5.00055 * 10 9 8 12 12 C 1.45385 * 103.33193 * 27.79047 * 11 10 9 13 13 H 1.09001 * 111.69232 * 71.38957 * 12 11 10 14 14 C 1.52339 * 122.60316 * 208.04387 * 12 11 10 15 15 C 1.55204 * 100.18681 * 145.79745 * 14 12 11 16 16 O 1.21284 * 125.25022 * 156.60862 * 15 14 12 17 17 N 1.37444 * 109.06902 * 337.37038 * 15 14 12 18 18 C 1.41539 * 119.63914 * 359.49618 * 6 5 4 19 19 C 1.41035 * 120.27891 * 180.27279 * 18 6 5 20 20 H 1.08004 * 119.99758 * 26.19479 * 19 18 6 21 21 C 1.39900 * 120.00195 * 206.19612 * 19 18 6 22 22 N 1.30893 * 119.99761 * 16.11672 * 21 19 18 23 23 Si 1.86804 * 120.00003 * 196.11697 * 21 19 18 24 24 H 1.48498 * 109.47014 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46887 * 120.00020 * 23 21 19 26 26 H 1.48497 * 109.46904 * 240.00120 * 23 21 19 27 27 C 1.37835 * 119.81905 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47234 * 59.99974 * 1 2 3 29 29 H 1.09000 * 109.47315 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47056 * 300.00102 * 1 2 3 31 31 H 1.08002 * 119.71554 * 359.97132 * 4 3 2 32 32 H 1.07999 * 119.89957 * 180.25503 * 5 4 3 33 33 H 0.97002 * 120.00209 * 185.16403 * 7 6 5 34 34 H 1.09003 * 110.75661 * 318.80218 * 9 8 7 35 35 H 1.09002 * 110.75728 * 195.43706 * 9 8 7 36 36 H 1.09002 * 110.11422 * 245.82966 * 10 9 8 37 37 H 1.08993 * 110.11773 * 124.18166 * 10 9 8 38 38 H 1.00900 * 111.00848 * 268.74519 * 11 10 9 39 39 H 1.09001 * 111.14066 * 264.04351 * 14 12 11 40 40 H 1.08996 * 111.14078 * 28.24901 * 14 12 11 41 41 H 0.97000 * 126.20312 * 171.45456 * 17 15 14 42 42 H 0.97003 * 119.99462 * 179.97438 * 22 21 19 43 43 H 1.07991 * 120.11490 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2833 2.3783 0.0005 5 6 1.8941 3.6169 0.0063 6 6 3.2779 3.7124 0.0011 7 7 3.8917 4.9580 0.0020 8 6 3.0824 6.1732 0.1227 9 6 2.5126 6.1761 1.5062 10 6 3.7261 6.6258 2.3777 11 7 4.8304 6.9571 1.4172 12 6 4.1192 7.3598 0.2148 13 1 3.6350 8.3285 0.3385 14 6 4.7089 7.1983 -1.1805 15 6 3.4208 6.8873 -1.9886 16 8 3.2817 7.0661 -3.1801 17 7 2.4630 6.3949 -1.1347 18 6 4.0609 2.5334 0.0005 19 6 5.4689 2.6148 0.0010 20 1 5.9594 3.4836 0.4146 21 6 6.2302 1.5702 -0.5343 22 7 5.6651 0.6784 -1.3080 23 14 8.0532 1.4483 -0.1449 24 1 8.4451 2.5700 0.7458 25 1 8.3287 0.1573 0.5351 26 1 8.8345 1.5205 -1.4057 27 6 3.4230 1.2792 0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2053 2.3130 0.0005 32 1 1.2925 4.5138 0.0109 33 1 4.8563 5.0235 -0.0773 34 1 2.1824 5.1768 1.7901 35 1 1.6940 6.8915 1.5853 36 1 4.0343 5.8151 3.0380 37 1 3.4615 7.5064 2.9629 38 1 5.4107 6.1507 1.2411 39 1 5.1835 8.1205 -1.5159 40 1 5.4078 6.3628 -1.2176 41 1 1.5322 6.2295 -1.3519 42 1 6.1931 -0.0457 -1.6794 43 1 4.0101 0.3728 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163252155.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:41 Heat of formation + Delta-G solvation = -12.411749 kcal Electronic energy + Delta-G solvation = -27934.237066 eV Core-core repulsion = 24173.238789 eV Total energy + Delta-G solvation = -3760.998277 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.87068 -40.33274 -39.37161 -38.14548 -35.85935 -35.35650 -33.84398 -32.52565 -31.36297 -29.80145 -29.17591 -27.45603 -26.92748 -26.33616 -23.22016 -22.28223 -22.06835 -21.69024 -21.04557 -19.41695 -18.57603 -17.96019 -17.95634 -17.57239 -16.69061 -16.56152 -16.34381 -16.27742 -15.96998 -15.63257 -15.26280 -14.97100 -14.71861 -14.42184 -14.08014 -13.85131 -13.68584 -13.51338 -13.22118 -13.07844 -12.94748 -12.80071 -12.68656 -12.35957 -12.24021 -12.04833 -11.94691 -11.81779 -11.47643 -11.24896 -11.17464 -10.97455 -10.46664 -10.21493 -9.56001 -9.30119 -8.59012 -7.81588 -6.12260 0.99042 1.29484 1.36260 1.41248 1.52416 1.54806 2.17476 2.23073 2.46834 2.77973 2.90198 3.02755 3.44349 3.61997 3.77255 3.82899 3.93310 4.13767 4.32361 4.33892 4.40444 4.46737 4.50733 4.56772 4.73187 4.76288 4.83081 4.96510 5.06029 5.07755 5.11778 5.16637 5.30266 5.57105 5.60455 5.66187 5.80687 5.81521 5.96618 6.01014 6.20372 6.24076 6.37983 6.77281 6.95272 7.03871 7.12976 7.16903 7.29431 8.43005 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.009592 B = 0.006378 C = 0.004740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2918.329148 B = 4389.357745 C = 5905.699144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.358 6.358 3 C 0.079 3.921 4 C -0.276 4.276 5 C -0.140 4.140 6 C 0.100 3.900 7 N -0.752 5.752 8 C 0.322 3.678 9 C -0.131 4.131 10 C 0.058 3.942 11 N -0.647 5.647 12 C 0.063 3.937 13 H 0.137 0.863 14 C -0.131 4.131 15 C 0.528 3.472 16 O -0.566 6.566 17 N -0.705 5.705 18 C 0.070 3.930 19 C -0.480 4.480 20 H 0.087 0.913 21 C 0.031 3.969 22 N -0.833 5.833 23 Si 0.974 3.026 24 H -0.245 1.245 25 H -0.276 1.276 26 H -0.275 1.275 27 C -0.205 4.205 28 H 0.047 0.953 29 H 0.111 0.889 30 H 0.056 0.944 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.389 0.611 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.071 0.929 37 H 0.109 0.891 38 H 0.339 0.661 39 H 0.128 0.872 40 H 0.101 0.899 41 H 0.408 0.592 42 H 0.280 0.720 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.360 11.237 7.510 14.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.273 6.273 3 C 0.034 3.966 4 C -0.296 4.296 5 C -0.164 4.164 6 C 0.001 3.999 7 N -0.394 5.394 8 C 0.146 3.854 9 C -0.171 4.171 10 C -0.071 4.071 11 N -0.275 5.275 12 C -0.050 4.050 13 H 0.155 0.845 14 C -0.172 4.172 15 C 0.316 3.684 16 O -0.443 6.443 17 N -0.362 5.362 18 C 0.066 3.934 19 C -0.511 4.511 20 H 0.105 0.895 21 C -0.183 4.183 22 N -0.459 5.459 23 Si 0.796 3.204 24 H -0.168 1.168 25 H -0.202 1.202 26 H -0.201 1.201 27 C -0.227 4.227 28 H 0.066 0.934 29 H 0.129 0.871 30 H 0.075 0.925 31 H 0.136 0.864 32 H 0.133 0.867 33 H 0.227 0.773 34 H 0.094 0.906 35 H 0.121 0.879 36 H 0.089 0.911 37 H 0.127 0.873 38 H 0.157 0.843 39 H 0.146 0.854 40 H 0.119 0.881 41 H 0.247 0.753 42 H 0.090 0.910 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.120 11.770 7.061 14.331 hybrid contribution -0.062 -1.945 -0.962 2.170 sum -4.182 9.826 6.099 12.298 Atomic orbital electron populations 1.23042 0.78162 1.04102 1.01096 1.85958 1.22285 1.28781 1.90312 1.18948 0.92189 0.83789 1.01627 1.20526 0.98212 0.91805 1.19104 1.20005 0.92087 0.96085 1.08218 1.17773 0.91321 0.85650 1.05192 1.45350 1.07976 1.01755 1.84349 1.20820 0.90906 0.87266 0.86368 1.22312 1.00436 1.03826 0.90551 1.23553 0.87463 1.01477 0.94656 1.62944 1.17887 1.38328 1.08338 1.23563 0.93254 0.98468 0.89688 0.84527 1.22695 0.94918 1.05676 0.93924 1.23081 0.86348 0.73387 0.85631 1.90685 1.82533 1.55172 1.15901 1.45884 1.12289 1.65696 1.12306 1.17291 0.93642 0.89349 0.93147 1.19419 0.91034 1.04496 1.36109 0.89518 1.26693 1.05154 0.94232 0.92216 1.69982 1.39926 1.12512 1.23524 0.85270 0.76837 0.79429 0.78873 1.16775 1.20158 1.20085 1.20287 0.90391 0.98292 1.13691 0.93392 0.87059 0.92544 0.86436 0.86657 0.77279 0.90619 0.87937 0.91052 0.87326 0.84285 0.85419 0.88120 0.75260 0.90951 0.88881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.97 9.81 113.37 1.11 2.08 16 2 O -0.36 -16.20 10.49 -93.22 -0.98 -17.18 16 3 C 0.08 3.88 6.67 22.46 0.15 4.03 16 4 C -0.28 -11.74 9.03 22.52 0.20 -11.54 16 5 C -0.14 -5.59 7.80 22.35 0.17 -5.42 16 6 C 0.10 4.25 6.16 38.96 0.24 4.49 16 7 N -0.75 -24.97 3.55 -310.01 -1.10 -26.08 16 8 C 0.32 8.02 1.12 90.49 0.10 8.12 16 9 C -0.13 -2.74 5.70 30.56 0.17 -2.56 16 10 C 0.06 1.07 7.46 86.73 0.65 1.71 16 11 N -0.65 -13.21 7.52 -473.92 -3.56 -16.77 16 12 C 0.06 1.27 3.75 46.70 0.18 1.45 16 13 H 0.14 2.22 8.14 -2.39 -0.02 2.20 16 14 C -0.13 -3.11 6.49 31.13 0.20 -2.91 16 15 C 0.53 16.54 8.30 88.73 0.74 17.28 16 16 O -0.57 -22.50 18.03 -3.04 -0.05 -22.56 16 17 N -0.71 -19.36 5.48 -428.55 -2.35 -21.71 16 18 C 0.07 3.57 5.57 -21.18 -0.12 3.46 16 19 C -0.48 -23.79 8.44 23.36 0.20 -23.59 16 20 H 0.09 3.88 6.78 -2.91 -0.02 3.86 16 21 C 0.03 1.53 5.16 85.24 0.44 1.97 16 22 N -0.83 -45.05 10.97 21.82 0.24 -44.81 16 23 Si 0.97 37.82 29.59 68.60 2.03 39.85 16 24 H -0.24 -8.77 7.11 99.48 0.71 -8.06 16 25 H -0.28 -10.75 7.11 99.48 0.71 -10.05 16 26 H -0.28 -10.57 7.11 99.48 0.71 -9.86 16 27 C -0.21 -11.18 8.59 22.78 0.20 -10.98 16 28 H 0.05 1.44 7.65 -2.39 -0.02 1.42 16 29 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 30 H 0.06 1.60 7.65 -2.39 -0.02 1.58 16 31 H 0.12 4.29 6.26 -2.91 -0.02 4.27 16 32 H 0.12 3.84 5.60 -2.91 -0.02 3.83 16 33 H 0.39 13.18 3.64 -92.71 -0.34 12.84 16 34 H 0.08 1.99 5.99 -2.39 -0.01 1.98 16 35 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.11 1.48 8.14 -2.39 -0.02 1.47 16 38 H 0.34 8.00 6.91 -89.69 -0.62 7.38 16 39 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.10 2.64 6.63 -2.39 -0.02 2.63 16 41 H 0.41 10.69 8.49 -92.71 -0.79 9.91 16 42 H 0.28 14.05 8.30 -92.71 -0.77 13.28 16 43 H 0.09 5.56 6.22 -2.91 -0.02 5.55 16 Total: -1.00 -67.50 335.99 -1.80 -69.30 By element: Atomic # 1 Polarization: 53.03 SS G_CDS: -0.65 Total: 52.38 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: 4.63 Total: -12.42 kcal Atomic # 7 Polarization: -102.59 SS G_CDS: -6.78 Total: -109.37 kcal Atomic # 8 Polarization: -38.70 SS G_CDS: -1.03 Total: -39.73 kcal Atomic # 14 Polarization: 37.82 SS G_CDS: 2.03 Total: 39.85 kcal Total: -67.50 -1.80 -69.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163252155.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.885 kcal (2) G-P(sol) polarization free energy of solvation -67.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds