Wall clock time and date at job start Tue Mar 31 2020 11:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35960 * 117.00018 * 2 1 4 4 C 1.39412 * 119.82077 * 0.02562 * 3 2 1 5 5 C 1.38098 * 120.57392 * 179.97438 * 4 3 2 6 6 C 1.38722 * 120.19740 * 359.73895 * 5 4 3 7 7 N 1.38857 * 120.18144 * 180.25548 * 6 5 4 8 8 C 1.46497 * 119.99610 * 5.89290 * 7 6 5 9 9 C 1.53805 * 111.31231 * 171.79693 * 8 7 6 10 10 C 1.54079 * 103.79528 * 266.40687 * 9 8 7 11 11 N 1.47159 * 106.51558 * 331.76381 * 10 9 8 12 12 C 1.47321 * 109.38914 * 18.51360 * 11 10 9 13 13 H 1.09002 * 112.61063 * 123.54482 * 12 11 10 14 14 C 1.54749 * 108.13866 * 249.50545 * 12 11 10 15 15 C 1.51078 * 104.77357 * 134.08358 * 14 12 11 16 16 O 1.21283 * 124.89783 * 164.62784 * 15 14 12 17 17 N 1.35677 * 110.44219 * 344.75870 * 15 14 12 18 18 C 1.41545 * 119.63625 * 0.51648 * 6 5 4 19 19 C 1.41025 * 120.27424 * 179.76872 * 18 6 5 20 20 H 1.07996 * 120.00093 * 335.37940 * 19 18 6 21 21 C 1.39901 * 119.99812 * 155.38324 * 19 18 6 22 22 N 1.30893 * 120.00292 * 333.03169 * 21 19 18 23 23 Si 1.86806 * 120.00023 * 153.03958 * 21 19 18 24 24 H 1.48494 * 109.47106 * 179.97438 * 23 21 19 25 25 H 1.48491 * 109.47422 * 59.99283 * 23 21 19 26 26 H 1.48506 * 109.46583 * 299.99617 * 23 21 19 27 27 C 1.37840 * 119.82154 * 179.97438 * 3 2 1 28 28 H 1.09006 * 109.47130 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47394 * 300.00390 * 1 2 3 30 30 H 1.08997 * 109.47232 * 60.00337 * 1 2 3 31 31 H 1.08008 * 119.71513 * 359.95543 * 4 3 2 32 32 H 1.07998 * 119.90140 * 179.97438 * 5 4 3 33 33 H 0.96993 * 119.99740 * 185.89348 * 7 6 5 34 34 H 1.09003 * 110.56229 * 24.98163 * 9 8 7 35 35 H 1.09002 * 110.55948 * 147.83119 * 9 8 7 36 36 H 1.08995 * 110.05384 * 91.02694 * 10 9 8 37 37 H 1.09004 * 110.04665 * 212.45025 * 10 9 8 38 38 H 1.00900 * 110.99725 * 141.33779 * 11 10 9 39 39 H 1.09002 * 110.38066 * 252.91415 * 14 12 11 40 40 H 1.09003 * 110.37475 * 15.14811 * 14 12 11 41 41 H 0.97003 * 124.97672 * 182.37438 * 17 15 14 42 42 H 0.97001 * 119.99549 * 354.76010 * 22 21 19 43 43 H 1.07996 * 120.10879 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2833 2.3782 0.0005 5 6 1.8940 3.6168 0.0011 6 6 3.2779 3.7124 0.0066 7 7 3.8916 4.9580 0.0124 8 6 3.0828 6.1724 0.1432 9 6 3.9680 7.4162 0.3304 10 6 4.0567 7.5771 1.8601 11 7 2.8187 7.0056 2.4135 12 6 2.1948 6.1259 1.4098 13 1 2.0392 5.1124 1.7796 14 6 0.8941 6.8040 0.9168 15 6 0.9370 6.6717 -0.5876 16 8 -0.0109 6.8370 -1.3259 17 7 2.1863 6.3385 -0.9986 18 6 4.0610 2.5333 0.0005 19 6 5.4689 2.6148 0.0010 20 1 5.9588 3.4969 -0.3840 21 6 6.2308 1.5530 0.5003 22 7 5.7279 0.7575 1.4100 23 14 7.9660 1.2706 -0.1312 24 1 8.5556 0.0914 0.5520 25 1 8.7958 2.4700 0.1480 26 1 7.9262 1.0262 -1.5955 27 6 3.4229 1.2793 0.0005 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.2052 2.3130 0.0002 32 1 1.2924 4.5137 0.0011 33 1 4.8558 5.0239 -0.0700 34 1 4.9576 7.2493 -0.0950 35 1 3.4990 8.2910 -0.1200 36 1 4.9218 7.0360 2.2433 37 1 4.1311 8.6328 2.1211 38 1 3.0030 6.5039 3.2693 39 1 0.0216 6.2887 1.3185 40 1 0.8803 7.8546 1.2069 41 1 2.4575 6.2323 -1.9238 42 1 4.8574 0.9480 1.7931 43 1 4.0100 0.3728 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163252158.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:51 Heat of formation + Delta-G solvation = -32.466412 kcal Electronic energy + Delta-G solvation = -27795.362206 eV Core-core repulsion = 24033.494293 eV Total energy + Delta-G solvation = -3761.867913 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.14540 -38.81483 -37.90909 -36.80202 -34.63706 -33.70954 -32.93983 -31.17563 -29.52899 -28.80022 -27.96993 -26.23911 -25.33681 -24.95611 -21.85536 -21.00462 -20.61587 -20.42517 -19.94460 -18.25099 -17.34549 -16.92006 -16.30957 -16.19705 -15.53405 -14.98249 -14.86841 -14.63687 -14.47418 -14.17500 -14.00193 -13.82106 -13.53668 -12.88801 -12.76289 -12.65903 -12.36047 -12.07711 -11.95704 -11.78123 -11.63780 -11.45245 -11.25869 -11.16547 -11.13963 -10.93629 -10.65018 -10.46603 -10.11139 -9.86709 -9.55047 -9.06842 -8.98032 -8.79066 -8.50413 -7.73495 -7.31460 -6.34782 -4.40477 2.66106 2.69796 2.86696 3.09985 3.20663 3.30803 3.46732 3.88523 3.96108 4.10635 4.27813 4.42810 4.52528 4.60922 4.69490 4.98376 5.14693 5.24877 5.41501 5.45197 5.62975 5.66973 5.69529 5.72013 5.83855 5.87233 5.87568 6.00088 6.01341 6.21967 6.63679 6.69839 6.74621 6.91558 7.05450 7.14569 7.21121 7.30499 7.41648 7.46189 7.74993 7.81307 7.95183 8.17939 8.38776 8.48321 8.57696 8.75570 8.86699 10.00563 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010744 B = 0.005925 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.491588 B = 4724.625610 C = 6563.924386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.331 6.331 3 C 0.122 3.878 4 C -0.295 4.295 5 C -0.127 4.127 6 C 0.070 3.930 7 N -0.731 5.731 8 C 0.379 3.621 9 C -0.139 4.139 10 C 0.052 3.948 11 N -0.672 5.672 12 C 0.062 3.938 13 H 0.111 0.889 14 C -0.144 4.144 15 C 0.524 3.476 16 O -0.540 6.540 17 N -0.727 5.727 18 C 0.097 3.903 19 C -0.523 4.523 20 H 0.072 0.928 21 C 0.042 3.958 22 N -0.789 5.789 23 Si 1.061 2.939 24 H -0.274 1.274 25 H -0.278 1.278 26 H -0.275 1.275 27 C -0.235 4.235 28 H 0.083 0.917 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.400 0.600 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.051 0.949 37 H 0.081 0.919 38 H 0.347 0.653 39 H 0.098 0.902 40 H 0.115 0.885 41 H 0.406 0.594 42 H 0.301 0.699 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.581 9.216 1.941 9.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.246 6.246 3 C 0.078 3.922 4 C -0.316 4.316 5 C -0.150 4.150 6 C -0.026 4.026 7 N -0.370 5.370 8 C 0.203 3.797 9 C -0.179 4.179 10 C -0.077 4.077 11 N -0.301 5.301 12 C -0.050 4.050 13 H 0.129 0.871 14 C -0.185 4.185 15 C 0.311 3.689 16 O -0.416 6.416 17 N -0.385 5.385 18 C 0.092 3.908 19 C -0.551 4.551 20 H 0.090 0.910 21 C -0.181 4.181 22 N -0.412 5.412 23 Si 0.885 3.115 24 H -0.199 1.199 25 H -0.203 1.203 26 H -0.201 1.201 27 C -0.256 4.256 28 H 0.101 0.899 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.113 0.887 32 H 0.115 0.885 33 H 0.237 0.763 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.070 0.930 37 H 0.099 0.901 38 H 0.163 0.837 39 H 0.117 0.883 40 H 0.133 0.867 41 H 0.246 0.754 42 H 0.115 0.885 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.275 8.706 1.726 8.967 hybrid contribution -0.566 0.311 -0.607 0.886 sum -1.841 9.017 1.119 9.271 Atomic orbital electron populations 1.22747 0.80687 1.01866 1.00527 1.86000 1.19545 1.29015 1.90005 1.18725 0.92073 0.82579 0.98866 1.20181 0.97214 0.92031 1.22166 1.20094 0.92311 0.96067 1.06541 1.17628 0.90911 0.84655 1.09440 1.44192 1.07592 1.00899 1.84293 1.20799 0.86778 0.86254 0.85876 1.22796 1.00706 0.97231 0.97163 1.22487 0.91609 1.00584 0.93019 1.61555 1.25755 1.36252 1.06528 1.23334 0.93323 0.96834 0.91517 0.87078 1.22507 0.99498 1.04388 0.92131 1.21135 0.82001 0.74501 0.91272 1.90717 1.38203 1.51572 1.61148 1.47101 1.11120 1.70597 1.09680 1.16993 0.92875 0.88695 0.92209 1.20104 0.91087 1.04890 1.38991 0.90972 1.26881 1.06347 0.91777 0.93117 1.70465 1.20164 1.34800 1.15766 0.83686 0.73209 0.77399 0.77203 1.19860 1.20335 1.20054 1.20131 0.90081 0.97714 1.17690 0.89883 0.93704 0.93731 0.88691 0.88496 0.76314 0.89735 0.89528 0.93012 0.90081 0.83685 0.88325 0.86681 0.75445 0.88506 0.86783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 9.81 101.05 0.99 1.61 16 2 O -0.33 -7.28 10.49 -19.61 -0.21 -7.49 16 3 C 0.12 2.90 6.67 -39.29 -0.26 2.64 16 4 C -0.30 -6.54 9.03 -39.20 -0.35 -6.89 16 5 C -0.13 -2.69 7.51 -39.45 -0.30 -2.99 16 6 C 0.07 1.51 6.22 -83.24 -0.52 0.99 16 7 N -0.73 -12.76 5.41 -47.34 -0.26 -13.01 16 8 C 0.38 5.44 1.11 -190.61 -0.21 5.22 16 9 C -0.14 -1.57 6.38 -25.75 -0.16 -1.74 16 10 C 0.05 0.55 7.56 -3.12 -0.02 0.52 16 11 N -0.67 -7.76 6.75 -103.69 -0.70 -8.46 16 12 C 0.06 0.87 3.32 -65.64 -0.22 0.65 16 13 H 0.11 1.82 6.09 -51.93 -0.32 1.51 16 14 C -0.14 -1.96 6.19 -26.78 -0.17 -2.12 16 15 C 0.52 8.59 6.98 -10.39 -0.07 8.52 16 16 O -0.54 -10.69 18.03 5.55 0.10 -10.59 16 17 N -0.73 -11.04 4.84 -49.13 -0.24 -11.28 16 18 C 0.10 2.37 5.33 -106.65 -0.57 1.80 16 19 C -0.52 -12.52 8.48 -37.90 -0.32 -12.84 16 20 H 0.07 1.62 6.67 -52.49 -0.35 1.27 16 21 C 0.04 1.00 4.91 -17.33 -0.09 0.91 16 22 N -0.79 -20.18 12.31 55.55 0.68 -19.49 16 23 Si 1.06 20.51 30.01 -169.99 -5.10 15.41 16 24 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 25 H -0.28 -5.01 7.11 56.52 0.40 -4.61 16 26 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 27 C -0.24 -5.98 7.89 -38.80 -0.31 -6.29 16 28 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.04 0.70 7.65 -51.93 -0.40 0.30 16 30 H 0.04 0.70 7.65 -51.93 -0.40 0.31 16 31 H 0.10 1.93 6.26 -52.48 -0.33 1.60 16 32 H 0.10 1.90 3.41 -52.49 -0.18 1.72 16 33 H 0.40 6.94 6.54 -40.82 -0.27 6.67 16 34 H 0.08 0.89 7.81 -51.93 -0.41 0.49 16 35 H 0.09 0.93 8.06 -51.93 -0.42 0.51 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.35 3.78 8.90 -39.29 -0.35 3.43 16 39 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.12 1.41 7.93 -51.93 -0.41 1.00 16 41 H 0.41 6.11 8.96 -40.82 -0.37 5.75 16 42 H 0.30 7.98 6.73 -40.82 -0.27 7.71 16 43 H 0.11 3.09 6.46 -52.49 -0.34 2.75 16 LS Contribution 338.24 15.07 5.10 5.10 Total: -1.00 -28.75 338.24 -8.48 -37.23 By element: Atomic # 1 Polarization: 27.86 SS G_CDS: -5.29 Total: 22.57 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -2.58 Total: -9.99 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: -0.51 Total: -52.25 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.11 Total: -18.07 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.10 Total: 15.41 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.75 -8.48 -37.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163252158.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.765 kcal (2) G-P(sol) polarization free energy of solvation -28.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds