Wall clock time and date at job start Tue Mar 31 2020 11:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35960 * 117.00018 * 2 1 4 4 C 1.39412 * 119.82077 * 0.02562 * 3 2 1 5 5 C 1.38098 * 120.57392 * 179.97438 * 4 3 2 6 6 C 1.38722 * 120.19740 * 359.73895 * 5 4 3 7 7 N 1.38857 * 120.18144 * 180.25548 * 6 5 4 8 8 C 1.46497 * 119.99610 * 5.89290 * 7 6 5 9 9 C 1.53805 * 111.31231 * 171.79693 * 8 7 6 10 10 C 1.54079 * 103.79528 * 266.40687 * 9 8 7 11 11 N 1.47159 * 106.51558 * 331.76381 * 10 9 8 12 12 C 1.47321 * 109.38914 * 18.51360 * 11 10 9 13 13 H 1.09002 * 112.61063 * 123.54482 * 12 11 10 14 14 C 1.54749 * 108.13866 * 249.50545 * 12 11 10 15 15 C 1.51078 * 104.77357 * 134.08358 * 14 12 11 16 16 O 1.21283 * 124.89783 * 164.62784 * 15 14 12 17 17 N 1.35677 * 110.44219 * 344.75870 * 15 14 12 18 18 C 1.41545 * 119.63625 * 0.51648 * 6 5 4 19 19 C 1.41025 * 120.27424 * 179.76872 * 18 6 5 20 20 H 1.07996 * 120.00093 * 335.37940 * 19 18 6 21 21 C 1.39901 * 119.99812 * 155.38324 * 19 18 6 22 22 N 1.30893 * 120.00292 * 333.03169 * 21 19 18 23 23 Si 1.86806 * 120.00023 * 153.03958 * 21 19 18 24 24 H 1.48494 * 109.47106 * 179.97438 * 23 21 19 25 25 H 1.48491 * 109.47422 * 59.99283 * 23 21 19 26 26 H 1.48506 * 109.46583 * 299.99617 * 23 21 19 27 27 C 1.37840 * 119.82154 * 179.97438 * 3 2 1 28 28 H 1.09006 * 109.47130 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47394 * 300.00390 * 1 2 3 30 30 H 1.08997 * 109.47232 * 60.00337 * 1 2 3 31 31 H 1.08008 * 119.71513 * 359.95543 * 4 3 2 32 32 H 1.07998 * 119.90140 * 179.97438 * 5 4 3 33 33 H 0.96993 * 119.99740 * 185.89348 * 7 6 5 34 34 H 1.09003 * 110.56229 * 24.98163 * 9 8 7 35 35 H 1.09002 * 110.55948 * 147.83119 * 9 8 7 36 36 H 1.08995 * 110.05384 * 91.02694 * 10 9 8 37 37 H 1.09004 * 110.04665 * 212.45025 * 10 9 8 38 38 H 1.00900 * 110.99725 * 141.33779 * 11 10 9 39 39 H 1.09002 * 110.38066 * 252.91415 * 14 12 11 40 40 H 1.09003 * 110.37475 * 15.14811 * 14 12 11 41 41 H 0.97003 * 124.97672 * 182.37438 * 17 15 14 42 42 H 0.97001 * 119.99549 * 354.76010 * 22 21 19 43 43 H 1.07996 * 120.10879 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2833 2.3782 0.0005 5 6 1.8940 3.6168 0.0011 6 6 3.2779 3.7124 0.0066 7 7 3.8916 4.9580 0.0124 8 6 3.0828 6.1724 0.1432 9 6 3.9680 7.4162 0.3304 10 6 4.0567 7.5771 1.8601 11 7 2.8187 7.0056 2.4135 12 6 2.1948 6.1259 1.4098 13 1 2.0392 5.1124 1.7796 14 6 0.8941 6.8040 0.9168 15 6 0.9370 6.6717 -0.5876 16 8 -0.0109 6.8370 -1.3259 17 7 2.1863 6.3385 -0.9986 18 6 4.0610 2.5333 0.0005 19 6 5.4689 2.6148 0.0010 20 1 5.9588 3.4969 -0.3840 21 6 6.2308 1.5530 0.5003 22 7 5.7279 0.7575 1.4100 23 14 7.9660 1.2706 -0.1312 24 1 8.5556 0.0914 0.5520 25 1 8.7958 2.4700 0.1480 26 1 7.9262 1.0262 -1.5955 27 6 3.4229 1.2793 0.0005 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.2052 2.3130 0.0002 32 1 1.2924 4.5137 0.0011 33 1 4.8558 5.0239 -0.0700 34 1 4.9576 7.2493 -0.0950 35 1 3.4990 8.2910 -0.1200 36 1 4.9218 7.0360 2.2433 37 1 4.1311 8.6328 2.1211 38 1 3.0030 6.5039 3.2693 39 1 0.0216 6.2887 1.3185 40 1 0.8803 7.8546 1.2069 41 1 2.4575 6.2323 -1.9238 42 1 4.8574 0.9480 1.7931 43 1 4.0100 0.3728 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163252158.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:50 Heat of formation + Delta-G solvation = -54.597615 kcal Electronic energy + Delta-G solvation = -27796.321887 eV Core-core repulsion = 24033.494293 eV Total energy + Delta-G solvation = -3762.827594 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.37529 -40.49574 -39.24734 -38.38527 -35.99846 -35.29678 -34.41387 -32.34486 -31.30817 -30.08149 -29.29000 -27.61856 -26.89315 -26.50086 -23.30346 -22.40597 -22.05256 -21.66569 -21.24479 -19.95763 -18.66540 -18.14119 -17.91660 -17.75975 -16.95100 -16.42446 -16.24048 -16.01434 -15.81523 -15.62997 -15.27622 -15.17442 -15.04094 -14.40973 -14.08214 -13.87232 -13.82487 -13.56941 -13.31417 -13.11505 -12.97496 -12.80145 -12.70010 -12.63562 -12.40822 -12.13769 -12.05604 -11.98509 -11.77981 -11.31117 -11.16540 -10.81938 -10.44591 -10.19503 -9.62321 -9.47241 -9.18793 -8.05297 -6.24405 0.86325 1.10168 1.40503 1.52777 1.65089 1.79715 2.21959 2.35271 2.61023 2.74089 2.75698 2.97190 3.35769 3.52022 3.58127 3.63903 3.94040 4.16051 4.20206 4.27799 4.36593 4.39091 4.42007 4.46886 4.66014 4.73885 4.78701 4.86482 4.89693 4.93128 5.00932 5.03352 5.30268 5.37680 5.62319 5.64599 5.71851 5.76925 5.88915 5.91514 6.02500 6.14020 6.31867 6.46646 6.75623 6.94710 7.01453 7.09692 7.19554 8.10424 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010744 B = 0.005925 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.491588 B = 4724.625610 C = 6563.924386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.354 6.354 3 C 0.109 3.891 4 C -0.294 4.294 5 C -0.133 4.133 6 C 0.084 3.916 7 N -0.725 5.725 8 C 0.372 3.628 9 C -0.131 4.131 10 C 0.053 3.947 11 N -0.663 5.663 12 C 0.065 3.935 13 H 0.086 0.914 14 C -0.135 4.135 15 C 0.520 3.480 16 O -0.578 6.578 17 N -0.724 5.724 18 C 0.072 3.928 19 C -0.539 4.539 20 H 0.085 0.915 21 C 0.005 3.995 22 N -0.817 5.817 23 Si 1.111 2.889 24 H -0.280 1.280 25 H -0.250 1.250 26 H -0.271 1.271 27 C -0.263 4.263 28 H 0.116 0.884 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.401 0.599 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.051 0.949 37 H 0.106 0.894 38 H 0.351 0.649 39 H 0.105 0.895 40 H 0.136 0.864 41 H 0.406 0.594 42 H 0.283 0.717 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.304 11.458 2.096 11.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.269 6.269 3 C 0.064 3.936 4 C -0.314 4.314 5 C -0.157 4.157 6 C -0.015 4.015 7 N -0.363 5.363 8 C 0.197 3.803 9 C -0.171 4.171 10 C -0.076 4.076 11 N -0.293 5.293 12 C -0.048 4.048 13 H 0.104 0.896 14 C -0.175 4.175 15 C 0.308 3.692 16 O -0.457 6.457 17 N -0.380 5.380 18 C 0.067 3.933 19 C -0.567 4.567 20 H 0.102 0.898 21 C -0.212 4.212 22 N -0.440 5.440 23 Si 0.929 3.071 24 H -0.205 1.205 25 H -0.174 1.174 26 H -0.196 1.196 27 C -0.284 4.284 28 H 0.134 0.866 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.238 0.762 34 H 0.113 0.887 35 H 0.118 0.882 36 H 0.070 0.930 37 H 0.124 0.876 38 H 0.168 0.832 39 H 0.123 0.877 40 H 0.154 0.846 41 H 0.245 0.755 42 H 0.095 0.905 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.991 10.990 1.897 11.196 hybrid contribution -0.784 -0.360 -0.662 1.088 sum -1.775 10.630 1.235 10.847 Atomic orbital electron populations 1.23092 0.77812 1.04409 1.01217 1.85959 1.22561 1.28480 1.89927 1.18805 0.91856 0.83767 0.99207 1.20461 0.98193 0.91804 1.20971 1.20297 0.92441 0.96470 1.06503 1.17662 0.90984 0.85518 1.07295 1.44244 1.07914 1.00574 1.83574 1.21193 0.87223 0.86212 0.85640 1.22810 1.00588 0.95639 0.98040 1.22607 0.90930 1.01922 0.92160 1.61605 1.26397 1.35272 1.06020 1.23158 0.93753 0.96116 0.91741 0.89638 1.22510 0.99486 1.05660 0.89880 1.21584 0.81579 0.73766 0.92253 1.90699 1.39341 1.53393 1.62280 1.47127 1.11073 1.69873 1.09965 1.17291 0.93674 0.89402 0.92970 1.20327 0.91238 1.05717 1.39432 0.89755 1.28224 1.09493 0.91225 0.92212 1.70574 1.19643 1.36067 1.17718 0.83074 0.69349 0.78086 0.76602 1.20537 1.17356 1.19603 1.20086 0.90996 0.97293 1.20026 0.86579 0.92812 0.93062 0.86779 0.86777 0.76162 0.88673 0.88233 0.93018 0.87631 0.83165 0.87703 0.84634 0.75478 0.90456 0.89736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 9.81 113.37 1.11 2.05 16 2 O -0.35 -15.87 10.49 -93.09 -0.98 -16.85 16 3 C 0.11 5.30 6.67 22.46 0.15 5.45 16 4 C -0.29 -12.98 9.03 22.52 0.20 -12.77 16 5 C -0.13 -5.61 7.51 22.35 0.17 -5.44 16 6 C 0.08 3.60 6.22 38.96 0.24 3.84 16 7 N -0.73 -24.47 5.41 -303.70 -1.64 -26.11 16 8 C 0.37 9.90 1.11 89.20 0.10 10.00 16 9 C -0.13 -2.53 6.38 31.23 0.20 -2.34 16 10 C 0.05 0.92 7.56 86.62 0.66 1.57 16 11 N -0.66 -13.41 6.75 -481.95 -3.25 -16.66 16 12 C 0.07 1.69 3.32 46.03 0.15 1.84 16 13 H 0.09 2.71 6.09 -2.39 -0.01 2.69 16 14 C -0.13 -3.34 6.19 30.56 0.19 -3.15 16 15 C 0.52 16.17 6.98 87.63 0.61 16.78 16 16 O -0.58 -22.27 18.03 -3.04 -0.05 -22.33 16 17 N -0.72 -20.74 4.84 -427.22 -2.07 -22.81 16 18 C 0.07 3.57 5.33 -21.18 -0.11 3.46 16 19 C -0.54 -26.19 8.48 23.36 0.20 -25.99 16 20 H 0.08 3.76 6.67 -2.91 -0.02 3.74 16 21 C 0.01 0.27 4.91 85.24 0.42 0.69 16 22 N -0.82 -43.56 12.31 21.82 0.27 -43.29 16 23 Si 1.11 41.30 30.01 68.60 2.06 43.35 16 24 H -0.28 -10.63 7.11 99.48 0.71 -9.92 16 25 H -0.25 -8.12 7.11 99.48 0.71 -7.41 16 26 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 27 C -0.26 -14.00 7.89 22.78 0.18 -13.82 16 28 H 0.12 2.88 8.14 -2.38 -0.02 2.86 16 29 H 0.05 1.60 7.65 -2.39 -0.02 1.58 16 30 H 0.05 1.55 7.65 -2.39 -0.02 1.53 16 31 H 0.11 4.50 6.26 -2.91 -0.02 4.48 16 32 H 0.11 4.35 3.41 -2.91 -0.01 4.34 16 33 H 0.40 13.36 6.54 -92.71 -0.61 12.76 16 34 H 0.09 1.68 7.81 -2.39 -0.02 1.66 16 35 H 0.10 1.74 8.06 -2.39 -0.02 1.72 16 36 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.35 6.81 8.90 -89.69 -0.80 6.01 16 39 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 40 H 0.14 2.85 7.93 -2.39 -0.02 2.83 16 41 H 0.41 11.65 8.96 -92.71 -0.83 10.82 16 42 H 0.28 15.93 6.73 -92.71 -0.62 15.30 16 43 H 0.08 4.91 6.46 -2.91 -0.02 4.89 16 Total: -1.00 -64.73 338.24 -2.19 -66.93 By element: Atomic # 1 Polarization: 56.58 SS G_CDS: -0.99 Total: 55.59 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: 4.47 Total: -17.83 kcal Atomic # 7 Polarization: -102.17 SS G_CDS: -6.70 Total: -108.87 kcal Atomic # 8 Polarization: -38.14 SS G_CDS: -1.03 Total: -39.17 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.06 Total: 43.35 kcal Total: -64.73 -2.19 -66.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163252158.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.329 kcal (2) G-P(sol) polarization free energy of solvation -64.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds