Wall clock time and date at job start Tue Mar 31 2020 11:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35665 * 116.99856 * 2 1 4 4 C 1.38041 * 120.21239 * 359.97438 * 3 2 1 5 5 C 1.39220 * 119.98099 * 180.02562 * 4 3 2 6 6 N 1.38914 * 119.79671 * 179.97438 * 5 4 3 7 7 C 1.46506 * 120.00015 * 181.90360 * 6 5 4 8 8 C 1.50959 * 109.20533 * 75.37920 * 7 6 5 9 9 C 1.56366 * 100.64543 * 69.74261 * 8 7 6 10 10 N 1.49758 * 106.31237 * 23.04906 * 9 8 7 11 11 C 1.43942 * 105.92143 * 9.78733 * 10 9 8 12 12 H 1.08995 * 110.63472 * 79.78810 * 11 10 9 13 13 C 1.51665 * 125.44499 * 216.06685 * 11 10 9 14 14 C 1.53807 * 100.56311 * 150.61044 * 13 11 10 15 15 O 1.21281 * 125.68020 * 156.53692 * 14 13 11 16 16 N 1.37359 * 108.63798 * 336.51825 * 14 13 11 17 17 C 1.39716 * 120.40305 * 0.25075 * 5 4 3 18 18 C 1.36229 * 120.43100 * 359.48749 * 17 5 4 19 19 C 1.40863 * 120.00637 * 0.51370 * 18 17 5 20 20 C 1.40967 * 120.19517 * 179.71870 * 19 18 17 21 21 H 1.08002 * 119.99470 * 152.89723 * 20 19 18 22 22 C 1.39838 * 120.00406 * 332.89716 * 20 19 18 23 23 N 1.30948 * 119.99994 * 346.12233 * 22 20 19 24 24 Si 1.86801 * 119.99812 * 166.12513 * 22 20 19 25 25 H 1.48497 * 109.47177 * 60.00075 * 24 22 20 26 26 H 1.48509 * 109.46994 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47341 * 299.99836 * 24 22 20 28 28 H 1.08995 * 109.47555 * 60.00534 * 1 2 3 29 29 H 1.09000 * 109.47066 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46979 * 300.00265 * 1 2 3 31 31 H 1.08001 * 120.01358 * 0.05090 * 4 3 2 32 32 H 0.97005 * 120.00783 * 1.89858 * 6 5 4 33 33 H 1.09006 * 111.18846 * 187.59725 * 8 7 6 34 34 H 1.08993 * 111.19001 * 311.87723 * 8 7 6 35 35 H 1.08999 * 110.07497 * 142.29414 * 9 8 7 36 36 H 1.09000 * 110.07461 * 263.83891 * 9 8 7 37 37 H 1.00903 * 110.99438 * 130.35846 * 10 9 8 38 38 H 1.09004 * 111.20046 * 268.43954 * 13 11 10 39 39 H 1.09005 * 111.19802 * 32.78129 * 13 11 10 40 40 H 0.96996 * 126.12711 * 171.36606 * 16 14 13 41 41 H 1.08004 * 119.78593 * 179.74490 * 17 5 4 42 42 H 1.07999 * 119.99959 * 180.23118 * 18 17 5 43 43 H 0.96998 * 119.99928 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2974 2.3693 -0.0005 5 6 1.9344 3.6072 -0.0011 6 7 1.1783 4.7726 -0.0021 7 6 1.8435 6.0772 -0.0449 8 6 2.3516 6.3300 -1.4437 9 6 1.0030 6.5350 -2.2082 10 7 -0.0044 6.9492 -1.1804 11 6 0.7424 7.2082 0.0226 12 1 1.2073 8.1932 -0.0185 13 6 0.2709 6.9079 1.4324 14 6 1.6169 6.6528 2.1316 15 8 1.8282 6.7624 3.3208 16 7 2.5396 6.2799 1.1849 17 6 3.3294 3.6845 -0.0063 18 6 4.0834 2.5499 -0.0005 19 6 3.4573 1.2881 0.0000 20 6 4.2337 0.1114 0.0000 21 1 3.8361 -0.7977 0.4265 22 6 5.5184 0.1213 -0.5521 23 7 5.9003 1.1233 -1.3037 24 14 6.6897 -1.2948 -0.2175 25 1 6.0936 -2.5592 -0.7186 26 1 7.9784 -1.0462 -0.9124 27 1 6.9282 -1.4052 1.2441 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2186 2.3170 -0.0001 32 1 0.2100 4.7226 0.0253 33 1 2.9671 7.2288 -1.4829 34 1 2.8948 5.4666 -1.8276 35 1 1.1142 7.3161 -2.9602 36 1 0.6948 5.6019 -2.6799 37 1 -0.5073 7.7718 -1.4780 38 1 -0.2429 7.7652 1.8673 39 1 -0.3602 6.0193 1.4561 40 1 3.4931 6.1728 1.3267 41 1 3.8132 4.6501 -0.0109 42 1 5.1612 2.6179 -0.0009 43 1 6.7914 1.1300 -1.6870 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163252375.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:54 Heat of formation + Delta-G solvation = 4.882833 kcal Electronic energy + Delta-G solvation = -27467.002445 eV Core-core repulsion = 23706.754117 eV Total energy + Delta-G solvation = -3760.248328 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.60483 -38.64639 -38.09536 -36.32771 -34.90896 -34.02057 -32.16462 -31.31241 -29.19004 -28.80727 -28.17435 -26.46690 -25.75211 -24.25641 -21.34413 -21.24197 -20.67829 -20.43437 -19.79284 -17.74641 -17.27606 -16.95439 -16.40021 -16.20146 -15.27665 -15.00255 -14.82115 -14.59276 -14.58499 -14.12517 -14.00155 -13.77012 -13.68296 -13.28647 -13.00191 -12.70252 -12.22966 -11.95189 -11.86304 -11.68947 -11.66478 -11.21161 -11.17259 -11.03426 -10.72276 -10.57492 -10.49157 -10.34348 -9.97739 -9.73516 -9.59107 -9.16886 -9.11610 -8.78694 -8.50826 -7.15592 -6.60279 -6.40950 -3.95478 2.50053 2.90312 2.99623 3.17881 3.21025 3.23106 3.34221 3.42625 4.10918 4.13012 4.15057 4.43136 4.55659 4.63531 4.79164 4.92017 5.09433 5.12964 5.22881 5.49076 5.57675 5.68458 5.70822 5.79593 5.85434 5.88772 5.99530 6.09760 6.16875 6.30325 6.46399 6.72650 6.82778 6.94546 7.01165 7.09963 7.15246 7.34253 7.50616 7.73771 7.94903 8.09708 8.27405 8.36650 8.52622 8.63439 8.85043 9.04576 9.21551 10.44644 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015547 B = 0.004132 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.552220 B = 6774.028954 C = 7182.413070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.310 6.310 3 C 0.052 3.948 4 C -0.241 4.241 5 C 0.132 3.868 6 N -0.746 5.746 7 C 0.378 3.622 8 C -0.132 4.132 9 C 0.060 3.940 10 N -0.657 5.657 11 C 0.040 3.960 12 H 0.063 0.937 13 C -0.126 4.126 14 C 0.535 3.465 15 O -0.521 6.521 16 N -0.716 5.716 17 C -0.188 4.188 18 C -0.099 4.099 19 C 0.061 3.939 20 C -0.449 4.449 21 H 0.075 0.925 22 C 0.071 3.929 23 N -0.818 5.818 24 Si 0.906 3.094 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.267 1.267 28 H 0.040 0.960 29 H 0.080 0.920 30 H 0.038 0.962 31 H 0.096 0.904 32 H 0.393 0.607 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.056 0.944 36 H 0.090 0.910 37 H 0.342 0.658 38 H 0.096 0.904 39 H 0.112 0.888 40 H 0.410 0.590 41 H 0.084 0.916 42 H 0.126 0.874 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.991 12.048 -2.660 15.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.224 6.224 3 C 0.007 3.993 4 C -0.264 4.264 5 C 0.035 3.965 6 N -0.387 5.387 7 C 0.202 3.798 8 C -0.173 4.173 9 C -0.068 4.068 10 N -0.287 5.287 11 C -0.073 4.073 12 H 0.081 0.919 13 C -0.167 4.167 14 C 0.321 3.679 15 O -0.395 6.395 16 N -0.375 5.375 17 C -0.210 4.210 18 C -0.119 4.119 19 C 0.057 3.943 20 C -0.480 4.480 21 H 0.093 0.907 22 C -0.142 4.142 23 N -0.447 5.447 24 Si 0.731 3.269 25 H -0.193 1.193 26 H -0.207 1.207 27 H -0.192 1.192 28 H 0.058 0.942 29 H 0.098 0.902 30 H 0.057 0.943 31 H 0.114 0.886 32 H 0.229 0.771 33 H 0.094 0.906 34 H 0.119 0.881 35 H 0.074 0.926 36 H 0.108 0.892 37 H 0.158 0.842 38 H 0.114 0.886 39 H 0.130 0.870 40 H 0.251 0.749 41 H 0.102 0.898 42 H 0.143 0.857 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.778 11.439 -1.994 14.557 hybrid contribution 0.835 0.237 -0.190 0.889 sum -7.943 11.676 -2.184 14.289 Atomic orbital electron populations 1.22715 0.81845 1.01617 0.99853 1.85999 1.18141 1.28292 1.89952 1.19023 0.92210 0.82150 1.05928 1.20048 0.97132 0.91435 1.17754 1.16973 0.90361 0.84607 1.04568 1.44576 1.07019 1.01224 1.85843 1.19786 0.88802 0.85100 0.86121 1.22582 0.97925 1.03509 0.93239 1.23376 0.88861 1.01486 0.93051 1.61290 1.25481 1.39427 1.02472 1.22686 0.95120 0.97617 0.91863 0.91894 1.22182 0.96175 1.04734 0.93624 1.22134 0.86402 0.73916 0.85432 1.90725 1.82251 1.52117 1.14399 1.46239 1.10439 1.70093 1.10713 1.19935 0.91249 0.97261 1.12580 1.20729 0.99594 0.90274 1.01321 1.16917 0.87059 0.94058 0.96217 1.19171 0.97935 0.96908 1.34021 0.90687 1.25737 0.98518 0.96829 0.93164 1.69821 1.19375 1.30809 1.24715 0.86415 0.79108 0.81920 0.79445 1.19317 1.20707 1.19208 0.94165 0.90154 0.94327 0.88614 0.77098 0.90616 0.88119 0.92573 0.89192 0.84176 0.88561 0.87022 0.74921 0.89777 0.85674 0.91475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 9.81 101.05 0.99 1.61 16 2 O -0.31 -7.24 9.81 -18.70 -0.18 -7.43 16 3 C 0.05 1.29 6.71 -38.43 -0.26 1.03 16 4 C -0.24 -5.20 8.86 -39.29 -0.35 -5.54 16 5 C 0.13 2.66 6.37 -83.74 -0.53 2.12 16 6 N -0.75 -11.55 3.88 -48.67 -0.19 -11.74 16 7 C 0.38 4.88 0.80 -193.73 -0.16 4.72 16 8 C -0.13 -1.54 6.00 -25.95 -0.16 -1.69 16 9 C 0.06 0.58 7.30 -0.42 0.00 0.58 16 10 N -0.66 -5.90 6.87 -102.38 -0.70 -6.61 16 11 C 0.04 0.40 3.49 -67.23 -0.23 0.17 16 12 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 13 C -0.13 -1.41 6.43 -26.99 -0.17 -1.58 16 14 C 0.53 8.05 8.35 -8.23 -0.07 7.99 16 15 O -0.52 -9.82 18.03 5.56 0.10 -9.72 16 16 N -0.72 -10.13 5.27 -49.26 -0.26 -10.39 16 17 C -0.19 -4.06 8.00 -39.75 -0.32 -4.38 16 18 C -0.10 -2.49 8.60 -39.31 -0.34 -2.83 16 19 C 0.06 1.63 5.57 -106.64 -0.59 1.04 16 20 C -0.45 -12.39 8.69 -37.95 -0.33 -12.72 16 21 H 0.07 2.08 7.67 -52.49 -0.40 1.68 16 22 C 0.07 1.84 5.20 -17.33 -0.09 1.75 16 23 N -0.82 -21.51 10.89 55.54 0.60 -20.90 16 24 Si 0.91 19.70 29.58 -169.99 -5.03 14.67 16 25 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 26 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 27 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 28 H 0.04 0.65 7.66 -51.93 -0.40 0.25 16 29 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.04 0.62 7.66 -51.93 -0.40 0.22 16 31 H 0.10 1.84 6.29 -52.49 -0.33 1.51 16 32 H 0.39 5.81 7.08 -40.82 -0.29 5.52 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.10 1.45 6.78 -51.93 -0.35 1.09 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.34 2.29 8.90 -39.29 -0.35 1.94 16 38 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.11 1.29 6.98 -51.93 -0.36 0.92 16 40 H 0.41 5.84 8.11 -40.82 -0.33 5.51 16 41 H 0.08 1.62 5.27 -52.48 -0.28 1.34 16 42 H 0.13 3.29 6.19 -52.49 -0.32 2.97 16 43 H 0.27 6.66 8.30 -40.82 -0.34 6.33 16 LS Contribution 341.57 15.07 5.15 5.15 Total: -1.00 -30.90 341.57 -8.61 -39.50 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: -5.48 Total: 15.20 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -2.61 Total: -7.74 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: -0.55 Total: -49.64 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -0.08 Total: -17.14 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.03 Total: 14.67 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.90 -8.61 -39.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163252375.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.384 kcal (2) G-P(sol) polarization free energy of solvation -30.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds