Wall clock time and date at job start Tue Mar 31 2020 11:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35665 * 116.99856 * 2 1 4 4 C 1.38041 * 120.21239 * 359.97438 * 3 2 1 5 5 C 1.39220 * 119.98099 * 180.02562 * 4 3 2 6 6 N 1.38914 * 119.79671 * 179.97438 * 5 4 3 7 7 C 1.46506 * 120.00015 * 181.90360 * 6 5 4 8 8 C 1.50959 * 109.20533 * 75.37920 * 7 6 5 9 9 C 1.56366 * 100.64543 * 69.74261 * 8 7 6 10 10 N 1.49758 * 106.31237 * 23.04906 * 9 8 7 11 11 C 1.43942 * 105.92143 * 9.78733 * 10 9 8 12 12 H 1.08995 * 110.63472 * 79.78810 * 11 10 9 13 13 C 1.51665 * 125.44499 * 216.06685 * 11 10 9 14 14 C 1.53807 * 100.56311 * 150.61044 * 13 11 10 15 15 O 1.21281 * 125.68020 * 156.53692 * 14 13 11 16 16 N 1.37359 * 108.63798 * 336.51825 * 14 13 11 17 17 C 1.39716 * 120.40305 * 0.25075 * 5 4 3 18 18 C 1.36229 * 120.43100 * 359.48749 * 17 5 4 19 19 C 1.40863 * 120.00637 * 0.51370 * 18 17 5 20 20 C 1.40967 * 120.19517 * 179.71870 * 19 18 17 21 21 H 1.08002 * 119.99470 * 152.89723 * 20 19 18 22 22 C 1.39838 * 120.00406 * 332.89716 * 20 19 18 23 23 N 1.30948 * 119.99994 * 346.12233 * 22 20 19 24 24 Si 1.86801 * 119.99812 * 166.12513 * 22 20 19 25 25 H 1.48497 * 109.47177 * 60.00075 * 24 22 20 26 26 H 1.48509 * 109.46994 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47341 * 299.99836 * 24 22 20 28 28 H 1.08995 * 109.47555 * 60.00534 * 1 2 3 29 29 H 1.09000 * 109.47066 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46979 * 300.00265 * 1 2 3 31 31 H 1.08001 * 120.01358 * 0.05090 * 4 3 2 32 32 H 0.97005 * 120.00783 * 1.89858 * 6 5 4 33 33 H 1.09006 * 111.18846 * 187.59725 * 8 7 6 34 34 H 1.08993 * 111.19001 * 311.87723 * 8 7 6 35 35 H 1.08999 * 110.07497 * 142.29414 * 9 8 7 36 36 H 1.09000 * 110.07461 * 263.83891 * 9 8 7 37 37 H 1.00903 * 110.99438 * 130.35846 * 10 9 8 38 38 H 1.09004 * 111.20046 * 268.43954 * 13 11 10 39 39 H 1.09005 * 111.19802 * 32.78129 * 13 11 10 40 40 H 0.96996 * 126.12711 * 171.36606 * 16 14 13 41 41 H 1.08004 * 119.78593 * 179.74490 * 17 5 4 42 42 H 1.07999 * 119.99959 * 180.23118 * 18 17 5 43 43 H 0.96998 * 119.99928 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2974 2.3693 -0.0005 5 6 1.9344 3.6072 -0.0011 6 7 1.1783 4.7726 -0.0021 7 6 1.8435 6.0772 -0.0449 8 6 2.3516 6.3300 -1.4437 9 6 1.0030 6.5350 -2.2082 10 7 -0.0044 6.9492 -1.1804 11 6 0.7424 7.2082 0.0226 12 1 1.2073 8.1932 -0.0185 13 6 0.2709 6.9079 1.4324 14 6 1.6169 6.6528 2.1316 15 8 1.8282 6.7624 3.3208 16 7 2.5396 6.2799 1.1849 17 6 3.3294 3.6845 -0.0063 18 6 4.0834 2.5499 -0.0005 19 6 3.4573 1.2881 0.0000 20 6 4.2337 0.1114 0.0000 21 1 3.8361 -0.7977 0.4265 22 6 5.5184 0.1213 -0.5521 23 7 5.9003 1.1233 -1.3037 24 14 6.6897 -1.2948 -0.2175 25 1 6.0936 -2.5592 -0.7186 26 1 7.9784 -1.0462 -0.9124 27 1 6.9282 -1.4052 1.2441 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2186 2.3170 -0.0001 32 1 0.2100 4.7226 0.0253 33 1 2.9671 7.2288 -1.4829 34 1 2.8948 5.4666 -1.8276 35 1 1.1142 7.3161 -2.9602 36 1 0.6948 5.6019 -2.6799 37 1 -0.5073 7.7718 -1.4780 38 1 -0.2429 7.7652 1.8673 39 1 -0.3602 6.0193 1.4561 40 1 3.4931 6.1728 1.3267 41 1 3.8132 4.6501 -0.0109 42 1 5.1612 2.6179 -0.0009 43 1 6.7914 1.1300 -1.6870 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163252375.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:53 Heat of formation + Delta-G solvation = -19.599259 kcal Electronic energy + Delta-G solvation = -27468.064069 eV Core-core repulsion = 23706.754117 eV Total energy + Delta-G solvation = -3761.309951 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.67218 -40.36643 -39.31048 -37.96446 -36.14779 -35.60913 -33.75194 -32.37899 -30.65329 -30.49826 -29.42019 -28.00375 -26.80078 -25.93849 -22.86525 -22.66734 -21.83406 -21.61033 -21.07663 -19.20926 -18.89625 -18.16227 -17.76494 -17.55227 -16.75075 -16.37345 -16.23938 -16.15748 -15.86339 -15.49406 -15.47671 -15.07467 -14.78328 -14.52221 -14.23163 -14.05126 -13.80089 -13.56095 -13.23556 -12.89133 -12.83937 -12.77045 -12.59144 -12.43771 -12.33622 -12.14366 -11.86781 -11.64251 -11.44216 -11.38960 -11.19336 -11.01210 -10.39178 -10.20547 -9.49936 -8.92566 -8.47062 -8.17392 -5.91127 1.12393 1.14751 1.33816 1.39430 1.49921 1.56995 2.17780 2.30836 2.40221 2.85170 2.90931 3.01381 3.29731 3.48060 3.73657 3.82222 4.11291 4.21661 4.25834 4.34149 4.38767 4.48563 4.50751 4.58686 4.70600 4.75138 4.76775 4.83897 4.96978 5.00028 5.17455 5.26724 5.31460 5.45901 5.63071 5.66979 5.76959 5.87904 5.93059 6.09607 6.29934 6.48439 6.52168 6.81510 6.95099 7.09683 7.11012 7.18271 7.39781 8.56298 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015547 B = 0.004132 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.552220 B = 6774.028954 C = 7182.413070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.340 6.340 3 C 0.046 3.954 4 C -0.252 4.252 5 C 0.164 3.836 6 N -0.732 5.732 7 C 0.357 3.643 8 C -0.133 4.133 9 C 0.068 3.932 10 N -0.657 5.657 11 C 0.066 3.934 12 H 0.085 0.915 13 C -0.117 4.117 14 C 0.526 3.474 15 O -0.566 6.566 16 N -0.718 5.718 17 C -0.196 4.196 18 C -0.110 4.110 19 C 0.009 3.991 20 C -0.488 4.488 21 H 0.056 0.944 22 C 0.030 3.970 23 N -0.849 5.849 24 Si 0.971 3.029 25 H -0.267 1.267 26 H -0.268 1.268 27 H -0.267 1.267 28 H 0.052 0.948 29 H 0.109 0.891 30 H 0.050 0.950 31 H 0.124 0.876 32 H 0.401 0.599 33 H 0.099 0.901 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.362 0.638 38 H 0.124 0.876 39 H 0.112 0.888 40 H 0.406 0.594 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.158 14.272 -3.425 18.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.255 6.255 3 C 0.001 3.999 4 C -0.275 4.275 5 C 0.064 3.936 6 N -0.372 5.372 7 C 0.182 3.818 8 C -0.173 4.173 9 C -0.061 4.061 10 N -0.289 5.289 11 C -0.047 4.047 12 H 0.103 0.897 13 C -0.158 4.158 14 C 0.314 3.686 15 O -0.443 6.443 16 N -0.375 5.375 17 C -0.218 4.218 18 C -0.131 4.131 19 C 0.006 3.994 20 C -0.521 4.521 21 H 0.074 0.926 22 C -0.180 4.180 23 N -0.479 5.479 24 Si 0.794 3.206 25 H -0.192 1.192 26 H -0.192 1.192 27 H -0.192 1.192 28 H 0.070 0.930 29 H 0.127 0.873 30 H 0.069 0.931 31 H 0.141 0.859 32 H 0.239 0.761 33 H 0.118 0.882 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.090 0.910 37 H 0.181 0.819 38 H 0.142 0.858 39 H 0.130 0.870 40 H 0.246 0.754 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.001 13.713 -2.791 17.801 hybrid contribution 1.293 -0.294 0.052 1.327 sum -9.707 13.420 -2.738 16.787 Atomic orbital electron populations 1.23054 0.78676 1.04009 1.00912 1.85943 1.21506 1.28184 1.89869 1.19222 0.92036 0.83581 1.05067 1.20306 0.98434 0.90922 1.17864 1.17077 0.90165 0.85990 1.00415 1.44632 1.07262 1.00922 1.84340 1.20255 0.90411 0.84802 0.86290 1.22608 0.99265 1.03302 0.92091 1.23292 0.87471 1.01904 0.93396 1.61189 1.25143 1.40842 1.01765 1.22591 0.93436 0.97006 0.91688 0.89699 1.22172 0.93799 1.05901 0.93912 1.22892 0.87826 0.72898 0.84971 1.90701 1.83251 1.53990 1.16393 1.46350 1.10429 1.69446 1.11271 1.20039 0.92020 0.97053 1.12679 1.20648 0.98976 0.91204 1.02243 1.17248 0.88680 0.94501 0.98970 1.19234 0.99726 0.96810 1.36299 0.92559 1.26430 0.99473 0.99448 0.92599 1.69880 1.19911 1.32443 1.25640 0.85425 0.77350 0.78685 0.79174 1.19199 1.19211 1.19166 0.92957 0.87315 0.93109 0.85858 0.76130 0.88223 0.91282 0.89481 0.90953 0.81912 0.85826 0.87011 0.75439 0.87706 0.87779 0.91060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 9.81 113.37 1.11 2.05 16 2 O -0.34 -16.23 9.81 -89.81 -0.88 -17.11 16 3 C 0.05 2.35 6.71 23.02 0.15 2.51 16 4 C -0.25 -10.72 8.86 22.46 0.20 -10.52 16 5 C 0.16 6.46 6.37 38.61 0.25 6.70 16 6 N -0.73 -20.98 3.88 -307.90 -1.20 -22.17 16 7 C 0.36 8.27 0.80 90.66 0.07 8.34 16 8 C -0.13 -2.71 6.00 31.10 0.19 -2.53 16 9 C 0.07 1.04 7.30 86.92 0.63 1.68 16 10 N -0.66 -8.66 6.87 -477.83 -3.28 -11.95 16 11 C 0.07 1.02 3.49 46.80 0.16 1.19 16 12 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 13 C -0.12 -2.17 6.43 30.43 0.20 -1.98 16 14 C 0.53 14.86 8.35 88.26 0.74 15.59 16 15 O -0.57 -20.98 18.03 -3.03 -0.05 -21.03 16 16 N -0.72 -19.15 5.27 -426.66 -2.25 -21.40 16 17 C -0.20 -8.58 8.00 22.16 0.18 -8.40 16 18 C -0.11 -5.84 8.60 22.44 0.19 -5.65 16 19 C 0.01 0.51 5.57 -21.17 -0.12 0.40 16 20 C -0.49 -28.68 8.69 23.33 0.20 -28.47 16 21 H 0.06 3.35 7.67 -2.91 -0.02 3.33 16 22 C 0.03 1.65 5.20 85.21 0.44 2.09 16 23 N -0.85 -46.79 10.89 21.81 0.24 -46.56 16 24 Si 0.97 42.12 29.58 68.60 2.03 44.15 16 25 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 26 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 27 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 28 H 0.05 1.58 7.66 -2.39 -0.02 1.57 16 29 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 30 H 0.05 1.54 7.66 -2.39 -0.02 1.52 16 31 H 0.12 4.46 6.29 -2.91 -0.02 4.45 16 32 H 0.40 10.51 7.08 -92.70 -0.66 9.86 16 33 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 34 H 0.07 1.90 6.78 -2.39 -0.02 1.89 16 35 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.36 2.82 8.90 -89.69 -0.80 2.02 16 38 H 0.12 1.70 8.14 -2.38 -0.02 1.68 16 39 H 0.11 2.15 6.98 -2.38 -0.02 2.13 16 40 H 0.41 11.31 8.11 -92.71 -0.75 10.56 16 41 H 0.11 4.06 5.27 -2.91 -0.02 4.04 16 42 H 0.10 5.85 6.19 -2.91 -0.02 5.83 16 43 H 0.28 14.10 8.30 -92.71 -0.77 13.33 16 Total: -1.00 -72.71 341.57 -1.91 -74.62 By element: Atomic # 1 Polarization: 39.56 SS G_CDS: -1.11 Total: 38.44 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: 4.60 Total: -17.00 kcal Atomic # 7 Polarization: -95.58 SS G_CDS: -6.49 Total: -102.07 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: -0.94 Total: -38.14 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -72.71 -1.91 -74.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163252375.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.025 kcal (2) G-P(sol) polarization free energy of solvation -72.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds