Wall clock time and date at job start Tue Mar 31 2020 11:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35666 * 117.00057 * 2 1 4 4 C 1.38036 * 120.21334 * 0.23486 * 3 2 1 5 5 C 1.39212 * 119.98389 * 180.23015 * 4 3 2 6 6 N 1.38917 * 119.80367 * 179.76280 * 5 4 3 7 7 C 1.46497 * 120.00700 * 174.21206 * 6 5 4 8 8 C 1.49635 * 107.29205 * 293.02969 * 7 6 5 9 9 C 1.54310 * 103.57553 * 283.09009 * 8 7 6 10 10 N 1.50056 * 106.01194 * 354.76340 * 9 8 7 11 11 C 1.45383 * 103.33016 * 332.35807 * 10 9 8 12 12 H 1.09009 * 112.35823 * 288.32948 * 11 10 9 13 13 C 1.52336 * 123.17899 * 150.93579 * 11 10 9 14 14 C 1.53710 * 100.85766 * 213.67617 * 13 11 10 15 15 O 1.21283 * 125.68011 * 203.92296 * 14 13 11 16 16 N 1.37444 * 108.64623 * 23.88259 * 14 13 11 17 17 C 1.39727 * 120.40386 * 359.78704 * 5 4 3 18 18 C 1.36231 * 120.42685 * 359.97438 * 17 5 4 19 19 C 1.40855 * 120.01123 * 359.97438 * 18 17 5 20 20 C 1.40964 * 120.20137 * 179.97438 * 19 18 17 21 21 H 1.08000 * 120.00168 * 210.73126 * 20 19 18 22 22 C 1.39846 * 119.99754 * 30.72855 * 20 19 18 23 23 N 1.30950 * 119.99694 * 191.29943 * 22 20 19 24 24 Si 1.86802 * 120.00224 * 11.30913 * 22 20 19 25 25 H 1.48498 * 109.46921 * 269.99698 * 24 22 20 26 26 H 1.48502 * 109.46890 * 29.99265 * 24 22 20 27 27 H 1.48502 * 109.47016 * 149.99719 * 24 22 20 28 28 H 1.09005 * 109.47258 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47213 * 299.99816 * 1 2 3 30 30 H 1.09005 * 109.47306 * 60.00007 * 1 2 3 31 31 H 1.08003 * 120.00851 * 359.97438 * 4 3 2 32 32 H 0.97008 * 119.99913 * 354.21026 * 6 5 4 33 33 H 1.08997 * 110.75652 * 41.00215 * 8 7 6 34 34 H 1.09006 * 110.75364 * 164.37418 * 8 7 6 35 35 H 1.09000 * 110.07279 * 235.69788 * 9 8 7 36 36 H 1.09007 * 110.36434 * 113.98070 * 9 8 7 37 37 H 1.00894 * 111.00081 * 91.40074 * 10 9 8 38 38 H 1.08998 * 111.14525 * 95.77424 * 13 11 10 39 39 H 1.08998 * 111.17525 * 331.58799 * 13 11 10 40 40 H 0.97000 * 126.20313 * 187.73030 * 16 14 13 41 41 H 1.07998 * 119.78681 * 179.97438 * 17 5 4 42 42 H 1.08000 * 119.99309 * 180.02562 * 18 17 5 43 43 H 0.97003 * 120.00633 * 354.92914 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2974 2.3692 0.0049 5 6 1.9344 3.6071 0.0000 6 7 1.1784 4.7726 0.0000 7 6 1.8391 6.0743 0.1228 8 6 2.4296 6.1456 1.4959 9 6 1.2123 6.4343 2.3992 10 7 0.0485 6.6356 1.4735 11 6 0.6705 7.1271 0.2549 12 1 1.0383 8.1479 0.3597 13 6 0.0872 6.8915 -1.1325 14 6 1.3707 6.7705 -1.9695 15 8 1.4610 6.9807 -3.1606 16 7 2.3994 6.3852 -1.1434 17 6 3.3295 3.6845 -0.0053 18 6 4.0834 2.5498 -0.0053 19 6 3.4574 1.2880 0.0006 20 6 4.2336 0.1113 0.0001 21 1 3.8578 -0.7833 -0.4739 22 6 5.4904 0.1025 0.6134 23 7 6.3028 -0.9074 0.4269 24 14 6.0102 1.5312 1.6988 25 1 6.6961 2.5567 0.8723 26 1 4.8103 2.1307 2.3361 27 1 6.9372 1.0420 2.7507 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.2186 2.3169 0.0083 32 1 0.2130 4.7245 -0.0814 33 1 2.8815 5.1929 1.7720 34 1 3.1584 6.9536 1.5615 35 1 1.3864 7.3373 2.9843 36 1 1.0226 5.5896 3.0616 37 1 -0.4357 5.7662 1.3071 38 1 -0.5142 7.7411 -1.4556 39 1 -0.4916 5.9684 -1.1647 40 1 3.3381 6.3346 -1.3827 41 1 3.8132 4.6500 -0.0095 42 1 5.1612 2.6178 -0.0091 43 1 6.0061 -1.6823 -0.0756 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163252376.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:57 Heat of formation + Delta-G solvation = 14.102034 kcal Electronic energy + Delta-G solvation = -27729.738313 eV Core-core repulsion = 23969.889759 eV Total energy + Delta-G solvation = -3759.848553 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.09759 -39.00010 -38.33192 -36.60200 -35.01019 -34.18215 -32.46549 -31.72800 -29.41059 -29.08928 -28.45686 -26.71597 -25.85078 -23.93689 -21.84538 -21.33689 -21.04211 -20.71045 -19.94539 -18.19160 -17.82285 -17.28676 -16.66953 -16.04569 -15.93330 -15.30430 -14.88933 -14.81563 -14.59189 -14.33549 -14.22279 -13.99785 -13.72656 -13.39327 -13.11984 -12.79209 -12.71502 -12.51029 -12.18572 -11.84605 -11.62066 -11.52238 -11.32749 -10.84980 -10.83139 -10.65630 -10.56001 -10.52566 -10.14896 -9.80886 -9.57091 -9.29051 -9.26471 -8.86288 -8.70539 -7.50409 -7.24569 -6.74498 -4.21246 2.32901 2.50693 2.64856 3.09449 3.20562 3.26227 3.37021 3.54083 3.85527 4.10197 4.27487 4.27784 4.33055 4.53530 4.57448 4.70431 4.82770 5.02266 5.12226 5.36579 5.45853 5.50160 5.57012 5.64205 5.68362 5.71610 5.71819 5.85427 5.90027 5.97288 6.26439 6.34035 6.49979 6.68758 6.74612 6.79505 6.92995 6.98910 7.27396 7.48403 7.63315 7.76771 7.98329 8.11586 8.18338 8.18542 8.53607 8.67766 8.96874 10.21735 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014571 B = 0.004769 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.211910 B = 5869.365358 C = 6378.415927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.306 6.306 3 C 0.063 3.937 4 C -0.227 4.227 5 C 0.120 3.880 6 N -0.766 5.766 7 C 0.335 3.665 8 C -0.141 4.141 9 C 0.054 3.946 10 N -0.646 5.646 11 C 0.045 3.955 12 H 0.116 0.884 13 C -0.139 4.139 14 C 0.536 3.464 15 O -0.518 6.518 16 N -0.710 5.710 17 C -0.159 4.159 18 C -0.188 4.188 19 C 0.054 3.946 20 C -0.502 4.502 21 H 0.076 0.924 22 C 0.035 3.965 23 N -0.837 5.837 24 Si 1.077 2.923 25 H -0.282 1.282 26 H -0.263 1.263 27 H -0.294 1.294 28 H 0.084 0.916 29 H 0.042 0.958 30 H 0.040 0.960 31 H 0.101 0.899 32 H 0.381 0.619 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.341 0.659 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.409 0.591 41 H 0.092 0.908 42 H 0.110 0.890 43 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.866 14.060 4.226 18.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.220 6.220 3 C 0.018 3.982 4 C -0.249 4.249 5 C 0.023 3.977 6 N -0.410 5.410 7 C 0.158 3.842 8 C -0.182 4.182 9 C -0.075 4.075 10 N -0.275 5.275 11 C -0.068 4.068 12 H 0.134 0.866 13 C -0.180 4.180 14 C 0.322 3.678 15 O -0.391 6.391 16 N -0.369 5.369 17 C -0.181 4.181 18 C -0.208 4.208 19 C 0.050 3.950 20 C -0.533 4.533 21 H 0.094 0.906 22 C -0.181 4.181 23 N -0.462 5.462 24 Si 0.905 3.095 25 H -0.210 1.210 26 H -0.188 1.188 27 H -0.222 1.222 28 H 0.102 0.898 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.119 0.881 32 H 0.218 0.782 33 H 0.119 0.881 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.160 0.840 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.249 0.751 41 H 0.110 0.890 42 H 0.127 0.873 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.683 15.224 4.756 18.659 hybrid contribution -0.955 -1.677 -1.642 2.534 sum -10.637 13.548 3.114 17.504 Atomic orbital electron populations 1.22777 0.81406 1.02085 0.99945 1.86042 1.18473 1.27901 1.89574 1.18968 0.92078 0.82407 1.04755 1.20181 0.97437 0.91423 1.15904 1.16812 0.90213 0.84645 1.05985 1.45260 1.07001 1.02735 1.85998 1.20326 0.92314 0.85406 0.86119 1.22067 0.99539 1.04798 0.91768 1.23207 0.87020 1.02058 0.95234 1.62834 1.22578 1.32974 1.09081 1.23521 0.93893 0.99473 0.89957 0.86628 1.22455 0.96656 1.05164 0.93762 1.22081 0.85685 0.73796 0.86204 1.90740 1.84390 1.50149 1.13826 1.45932 1.10033 1.68533 1.12358 1.19795 0.91410 0.96979 1.09906 1.20408 0.98268 0.91687 1.10465 1.17114 0.88272 0.93690 0.95915 1.20310 1.02116 0.97967 1.32858 0.90630 1.27144 0.91941 1.02561 0.96468 1.70562 1.35547 1.06683 1.33370 0.83539 0.76604 0.73450 0.75875 1.20958 1.18770 1.22183 0.89790 0.93958 0.94135 0.88145 0.78222 0.88141 0.90221 0.89739 0.90235 0.84027 0.87749 0.87627 0.75064 0.89027 0.87288 0.90625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 9.81 101.05 0.99 1.53 16 2 O -0.31 -6.84 9.85 -18.70 -0.18 -7.02 16 3 C 0.06 1.47 6.71 -38.42 -0.26 1.21 16 4 C -0.23 -4.41 8.86 -39.29 -0.35 -4.76 16 5 C 0.12 2.16 6.16 -83.73 -0.52 1.64 16 6 N -0.77 -10.12 3.63 -49.69 -0.18 -10.30 16 7 C 0.33 3.78 1.10 -195.31 -0.21 3.56 16 8 C -0.14 -1.48 5.55 -27.71 -0.15 -1.63 16 9 C 0.05 0.48 7.42 -1.37 -0.01 0.47 16 10 N -0.65 -5.67 7.52 -102.14 -0.77 -6.44 16 11 C 0.04 0.40 3.81 -66.22 -0.25 0.15 16 12 H 0.12 0.98 8.14 -51.92 -0.42 0.55 16 13 C -0.14 -1.34 6.37 -26.70 -0.17 -1.51 16 14 C 0.54 7.28 8.29 -8.24 -0.07 7.21 16 15 O -0.52 -9.09 18.03 5.56 0.10 -8.99 16 16 N -0.71 -8.92 5.55 -50.44 -0.28 -9.20 16 17 C -0.16 -3.11 7.74 -39.75 -0.31 -3.42 16 18 C -0.19 -4.35 6.95 -39.31 -0.27 -4.63 16 19 C 0.05 1.37 5.17 -106.64 -0.55 0.82 16 20 C -0.50 -13.94 9.07 -37.95 -0.34 -14.29 16 21 H 0.08 2.25 7.90 -52.49 -0.41 1.83 16 22 C 0.03 0.94 5.48 -17.33 -0.09 0.84 16 23 N -0.84 -23.40 13.66 55.54 0.76 -22.64 16 24 Si 1.08 24.50 24.74 -169.99 -4.21 20.30 16 25 H -0.28 -6.04 6.55 56.52 0.37 -5.67 16 26 H -0.26 -5.79 6.73 56.52 0.38 -5.41 16 27 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 28 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.04 0.61 7.65 -51.93 -0.40 0.21 16 30 H 0.04 0.60 7.67 -51.93 -0.40 0.20 16 31 H 0.10 1.68 6.29 -52.48 -0.33 1.35 16 32 H 0.38 4.44 5.35 -40.82 -0.22 4.23 16 33 H 0.10 1.33 5.95 -51.93 -0.31 1.02 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.34 2.99 6.99 -39.30 -0.27 2.72 16 38 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.11 0.97 6.49 -51.93 -0.34 0.64 16 40 H 0.41 5.13 8.54 -40.82 -0.35 4.79 16 41 H 0.09 1.57 5.62 -52.49 -0.29 1.28 16 42 H 0.11 2.53 4.17 -52.49 -0.22 2.31 16 43 H 0.28 7.77 8.73 -40.82 -0.36 7.42 16 LS Contribution 332.08 15.07 5.00 5.00 Total: -1.00 -31.27 332.08 -7.61 -38.88 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -5.28 Total: 13.20 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -2.57 Total: -12.81 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: -0.47 Total: -48.57 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.08 Total: -16.01 kcal Atomic # 14 Polarization: 24.50 SS G_CDS: -4.21 Total: 20.30 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.27 -7.61 -38.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163252376.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.986 kcal (2) G-P(sol) polarization free energy of solvation -31.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds