Wall clock time and date at job start Tue Mar 31 2020 11:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35666 * 117.00057 * 2 1 4 4 C 1.38036 * 120.21334 * 0.23486 * 3 2 1 5 5 C 1.39212 * 119.98389 * 180.23015 * 4 3 2 6 6 N 1.38917 * 119.80367 * 179.76280 * 5 4 3 7 7 C 1.46497 * 120.00700 * 174.21206 * 6 5 4 8 8 C 1.49635 * 107.29205 * 293.02969 * 7 6 5 9 9 C 1.54310 * 103.57553 * 283.09009 * 8 7 6 10 10 N 1.50056 * 106.01194 * 354.76340 * 9 8 7 11 11 C 1.45383 * 103.33016 * 332.35807 * 10 9 8 12 12 H 1.09009 * 112.35823 * 288.32948 * 11 10 9 13 13 C 1.52336 * 123.17899 * 150.93579 * 11 10 9 14 14 C 1.53710 * 100.85766 * 213.67617 * 13 11 10 15 15 O 1.21283 * 125.68011 * 203.92296 * 14 13 11 16 16 N 1.37444 * 108.64623 * 23.88259 * 14 13 11 17 17 C 1.39727 * 120.40386 * 359.78704 * 5 4 3 18 18 C 1.36231 * 120.42685 * 359.97438 * 17 5 4 19 19 C 1.40855 * 120.01123 * 359.97438 * 18 17 5 20 20 C 1.40964 * 120.20137 * 179.97438 * 19 18 17 21 21 H 1.08000 * 120.00168 * 210.73126 * 20 19 18 22 22 C 1.39846 * 119.99754 * 30.72855 * 20 19 18 23 23 N 1.30950 * 119.99694 * 191.29943 * 22 20 19 24 24 Si 1.86802 * 120.00224 * 11.30913 * 22 20 19 25 25 H 1.48498 * 109.46921 * 269.99698 * 24 22 20 26 26 H 1.48502 * 109.46890 * 29.99265 * 24 22 20 27 27 H 1.48502 * 109.47016 * 149.99719 * 24 22 20 28 28 H 1.09005 * 109.47258 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47213 * 299.99816 * 1 2 3 30 30 H 1.09005 * 109.47306 * 60.00007 * 1 2 3 31 31 H 1.08003 * 120.00851 * 359.97438 * 4 3 2 32 32 H 0.97008 * 119.99913 * 354.21026 * 6 5 4 33 33 H 1.08997 * 110.75652 * 41.00215 * 8 7 6 34 34 H 1.09006 * 110.75364 * 164.37418 * 8 7 6 35 35 H 1.09000 * 110.07279 * 235.69788 * 9 8 7 36 36 H 1.09007 * 110.36434 * 113.98070 * 9 8 7 37 37 H 1.00894 * 111.00081 * 91.40074 * 10 9 8 38 38 H 1.08998 * 111.14525 * 95.77424 * 13 11 10 39 39 H 1.08998 * 111.17525 * 331.58799 * 13 11 10 40 40 H 0.97000 * 126.20313 * 187.73030 * 16 14 13 41 41 H 1.07998 * 119.78681 * 179.97438 * 17 5 4 42 42 H 1.08000 * 119.99309 * 180.02562 * 18 17 5 43 43 H 0.97003 * 120.00633 * 354.92914 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2974 2.3692 0.0049 5 6 1.9344 3.6071 0.0000 6 7 1.1784 4.7726 0.0000 7 6 1.8391 6.0743 0.1228 8 6 2.4296 6.1456 1.4959 9 6 1.2123 6.4343 2.3992 10 7 0.0485 6.6356 1.4735 11 6 0.6705 7.1271 0.2549 12 1 1.0383 8.1479 0.3597 13 6 0.0872 6.8915 -1.1325 14 6 1.3707 6.7705 -1.9695 15 8 1.4610 6.9807 -3.1606 16 7 2.3994 6.3852 -1.1434 17 6 3.3295 3.6845 -0.0053 18 6 4.0834 2.5498 -0.0053 19 6 3.4574 1.2880 0.0006 20 6 4.2336 0.1113 0.0001 21 1 3.8578 -0.7833 -0.4739 22 6 5.4904 0.1025 0.6134 23 7 6.3028 -0.9074 0.4269 24 14 6.0102 1.5312 1.6988 25 1 6.6961 2.5567 0.8723 26 1 4.8103 2.1307 2.3361 27 1 6.9372 1.0420 2.7507 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.2186 2.3169 0.0083 32 1 0.2130 4.7245 -0.0814 33 1 2.8815 5.1929 1.7720 34 1 3.1584 6.9536 1.5615 35 1 1.3864 7.3373 2.9843 36 1 1.0226 5.5896 3.0616 37 1 -0.4357 5.7662 1.3071 38 1 -0.5142 7.7411 -1.4556 39 1 -0.4916 5.9684 -1.1647 40 1 3.3381 6.3346 -1.3827 41 1 3.8132 4.6500 -0.0095 42 1 5.1612 2.6178 -0.0091 43 1 6.0061 -1.6823 -0.0756 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163252376.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:56 Heat of formation + Delta-G solvation = -12.614499 kcal Electronic energy + Delta-G solvation = -27730.896828 eV Core-core repulsion = 23969.889759 eV Total energy + Delta-G solvation = -3761.007069 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.05963 -40.62696 -39.44877 -38.17259 -36.13125 -35.74004 -34.09242 -32.63356 -30.90254 -30.70987 -29.38289 -28.13647 -26.80138 -25.56676 -23.34984 -22.60534 -22.07242 -21.69818 -21.22120 -20.07331 -19.15100 -18.38222 -17.87990 -17.25871 -16.79436 -16.50189 -16.40312 -16.21280 -16.09296 -15.94996 -15.32770 -15.25026 -14.97373 -14.71461 -14.40243 -14.23050 -13.85896 -13.62060 -13.46401 -13.16916 -13.09573 -12.60582 -12.54380 -12.22414 -12.14644 -12.11749 -11.95617 -11.65305 -11.49088 -11.28803 -11.22982 -11.00357 -10.56813 -10.44002 -9.61021 -9.22608 -9.11604 -8.44170 -6.19426 0.78871 0.93221 1.29719 1.36114 1.55953 1.76118 2.13227 2.27306 2.32445 2.72123 2.74922 2.84866 3.41464 3.50358 3.54031 3.78644 3.88908 4.07740 4.14728 4.27756 4.31253 4.35164 4.37723 4.42078 4.66565 4.72088 4.74369 4.78660 4.89066 4.95222 5.02474 5.05995 5.09605 5.26090 5.52571 5.54675 5.62946 5.73507 5.79170 5.87350 6.00503 6.23787 6.28835 6.49530 6.61980 6.81127 6.94067 7.08943 7.16717 8.19562 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014571 B = 0.004769 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.211910 B = 5869.365358 C = 6378.415927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.344 6.344 3 C 0.060 3.940 4 C -0.236 4.236 5 C 0.169 3.831 6 N -0.751 5.751 7 C 0.320 3.680 8 C -0.142 4.142 9 C 0.058 3.942 10 N -0.641 5.641 11 C 0.067 3.933 12 H 0.132 0.868 13 C -0.130 4.130 14 C 0.528 3.472 15 O -0.564 6.564 16 N -0.711 5.711 17 C -0.174 4.174 18 C -0.178 4.178 19 C 0.003 3.997 20 C -0.536 4.536 21 H 0.027 0.973 22 C -0.008 4.008 23 N -0.879 5.879 24 Si 1.113 2.887 25 H -0.260 1.260 26 H -0.252 1.252 27 H -0.290 1.290 28 H 0.105 0.895 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.136 0.864 32 H 0.395 0.605 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.077 0.923 37 H 0.343 0.657 38 H 0.126 0.874 39 H 0.115 0.885 40 H 0.408 0.592 41 H 0.121 0.879 42 H 0.105 0.895 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.887 18.582 5.568 23.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.258 6.258 3 C 0.015 3.985 4 C -0.259 4.259 5 C 0.069 3.931 6 N -0.394 5.394 7 C 0.145 3.855 8 C -0.182 4.182 9 C -0.071 4.071 10 N -0.270 5.270 11 C -0.046 4.046 12 H 0.150 0.850 13 C -0.171 4.171 14 C 0.316 3.684 15 O -0.441 6.441 16 N -0.368 5.368 17 C -0.196 4.196 18 C -0.198 4.198 19 C 0.000 4.000 20 C -0.568 4.568 21 H 0.046 0.954 22 C -0.215 4.215 23 N -0.507 5.507 24 Si 0.935 3.065 25 H -0.186 1.186 26 H -0.177 1.177 27 H -0.218 1.218 28 H 0.123 0.877 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.153 0.847 32 H 0.234 0.766 33 H 0.093 0.907 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.096 0.904 37 H 0.162 0.838 38 H 0.144 0.856 39 H 0.133 0.867 40 H 0.247 0.753 41 H 0.138 0.862 42 H 0.122 0.878 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.767 19.790 6.109 24.330 hybrid contribution -0.394 -2.816 -2.123 3.549 sum -13.161 16.974 3.986 21.845 Atomic orbital electron populations 1.23135 0.78092 1.04250 1.01474 1.86004 1.22050 1.28276 1.89516 1.19211 0.91825 0.83906 1.03576 1.20465 0.99109 0.90522 1.15756 1.16998 0.90147 0.85935 1.00018 1.45399 1.07666 1.02140 1.84146 1.20753 0.93812 0.84941 0.86041 1.22105 1.00760 1.04331 0.91001 1.23247 0.85958 1.03038 0.94843 1.62872 1.22352 1.33119 1.08619 1.23537 0.91913 0.99364 0.89748 0.85018 1.22460 0.94863 1.06641 0.93146 1.22798 0.87004 0.72693 0.85865 1.90723 1.85274 1.52053 1.16005 1.46018 1.10096 1.67901 1.12752 1.20024 0.92149 0.97080 1.10346 1.20543 0.98527 0.91933 1.08787 1.17282 0.89772 0.93666 0.99327 1.20128 1.03746 0.97644 1.35332 0.95415 1.28344 0.91995 1.04199 0.96947 1.70662 1.36281 1.07429 1.36318 0.83138 0.76836 0.71646 0.74844 1.18609 1.17671 1.21816 0.87667 0.91956 0.92658 0.84676 0.76598 0.90655 0.88154 0.87775 0.90442 0.83833 0.85587 0.86690 0.75282 0.86152 0.87794 0.92371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 9.81 113.37 1.11 1.87 16 2 O -0.34 -15.62 9.85 -89.82 -0.88 -16.50 16 3 C 0.06 2.80 6.71 23.02 0.15 2.95 16 4 C -0.24 -8.48 8.86 22.46 0.20 -8.28 16 5 C 0.17 5.47 6.16 38.61 0.24 5.70 16 6 N -0.75 -16.23 3.63 -311.11 -1.13 -17.36 16 7 C 0.32 5.70 1.10 90.49 0.10 5.80 16 8 C -0.14 -2.27 5.55 29.96 0.17 -2.11 16 9 C 0.06 0.72 7.42 86.13 0.64 1.35 16 10 N -0.64 -7.58 7.52 -477.05 -3.59 -11.16 16 11 C 0.07 0.84 3.81 46.70 0.18 1.02 16 12 H 0.13 1.40 8.14 -2.38 -0.02 1.38 16 13 C -0.13 -1.86 6.37 30.61 0.20 -1.66 16 14 C 0.53 12.52 8.29 88.21 0.73 13.26 16 15 O -0.56 -18.68 18.03 -3.04 -0.05 -18.74 16 16 N -0.71 -15.20 5.55 -430.35 -2.39 -17.59 16 17 C -0.17 -6.35 7.74 22.16 0.17 -6.18 16 18 C -0.18 -8.16 6.95 22.44 0.16 -8.01 16 19 C 0.00 0.16 5.17 -21.17 -0.11 0.05 16 20 C -0.54 -32.15 9.07 23.33 0.21 -31.94 16 21 H 0.03 1.83 7.90 -2.91 -0.02 1.81 16 22 C -0.01 -0.46 5.48 85.21 0.47 0.00 16 23 N -0.88 -53.20 13.66 21.82 0.30 -52.90 16 24 Si 1.11 50.80 24.74 68.60 1.70 52.50 16 25 H -0.26 -10.77 6.55 99.48 0.65 -10.11 16 26 H -0.25 -10.86 6.73 99.48 0.67 -10.19 16 27 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 28 H 0.10 2.64 8.14 -2.38 -0.02 2.62 16 29 H 0.06 1.60 7.65 -2.39 -0.02 1.58 16 30 H 0.05 1.48 7.67 -2.38 -0.02 1.46 16 31 H 0.14 3.89 6.29 -2.91 -0.02 3.87 16 32 H 0.40 6.93 5.35 -92.70 -0.50 6.43 16 33 H 0.07 1.66 5.95 -2.39 -0.01 1.65 16 34 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 35 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.34 3.99 6.99 -89.70 -0.63 3.36 16 38 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.12 1.47 6.49 -2.39 -0.02 1.46 16 40 H 0.41 8.98 8.54 -92.71 -0.79 8.19 16 41 H 0.12 3.70 5.62 -2.91 -0.02 3.69 16 42 H 0.10 4.81 4.17 -2.91 -0.01 4.80 16 43 H 0.27 16.27 8.73 -92.71 -0.81 15.46 16 Total: -1.00 -75.75 332.08 -2.39 -78.13 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: -0.95 Total: 29.80 kcal Atomic # 6 Polarization: -30.79 SS G_CDS: 4.61 Total: -26.18 kcal Atomic # 7 Polarization: -92.21 SS G_CDS: -6.81 Total: -99.01 kcal Atomic # 8 Polarization: -34.30 SS G_CDS: -0.94 Total: -35.24 kcal Atomic # 14 Polarization: 50.80 SS G_CDS: 1.70 Total: 52.50 kcal Total: -75.75 -2.39 -78.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163252376.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.520 kcal (2) G-P(sol) polarization free energy of solvation -75.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds