Wall clock time and date at job start Tue Mar 31 2020 11:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35668 * 117.00187 * 2 1 4 4 C 1.38042 * 120.21102 * 359.97438 * 3 2 1 5 5 C 1.39210 * 119.98181 * 180.02562 * 4 3 2 6 6 N 1.38934 * 119.79794 * 180.02562 * 5 4 3 7 7 C 1.46499 * 119.99741 * 172.12787 * 6 5 4 8 8 C 1.53805 * 111.31765 * 71.12972 * 7 6 5 9 9 C 1.54077 * 103.79686 * 93.58907 * 8 7 6 10 10 N 1.47159 * 106.51644 * 28.23896 * 9 8 7 11 11 C 1.47331 * 109.38870 * 341.48442 * 10 9 8 12 12 H 1.09003 * 112.61053 * 236.46047 * 11 10 9 13 13 C 1.54743 * 108.13647 * 110.49560 * 11 10 9 14 14 C 1.51085 * 104.77074 * 225.91630 * 13 11 10 15 15 O 1.21283 * 124.89932 * 195.37240 * 14 13 11 16 16 N 1.35679 * 110.44348 * 15.24476 * 14 13 11 17 17 C 1.39715 * 120.40711 * 359.97438 * 5 4 3 18 18 C 1.36227 * 120.42641 * 359.73633 * 17 5 4 19 19 C 1.40852 * 120.01089 * 0.51894 * 18 17 5 20 20 C 1.40964 * 120.20307 * 179.75917 * 19 18 17 21 21 H 1.08000 * 119.99922 * 154.37620 * 20 19 18 22 22 C 1.39848 * 120.00152 * 334.38166 * 20 19 18 23 23 N 1.30949 * 119.99713 * 334.61552 * 22 20 19 24 24 Si 1.86797 * 120.00158 * 154.61802 * 22 20 19 25 25 H 1.48496 * 109.47412 * 179.97438 * 24 22 20 26 26 H 1.48497 * 109.46932 * 299.99926 * 24 22 20 27 27 H 1.48505 * 109.47265 * 59.99961 * 24 22 20 28 28 H 1.09006 * 109.46623 * 299.99679 * 1 2 3 29 29 H 1.09000 * 109.47307 * 59.99972 * 1 2 3 30 30 H 1.08994 * 109.47261 * 180.02562 * 1 2 3 31 31 H 1.08003 * 120.01040 * 0.03338 * 4 3 2 32 32 H 0.96993 * 119.99504 * 352.12513 * 6 5 4 33 33 H 1.08995 * 110.55789 * 212.17245 * 8 7 6 34 34 H 1.08998 * 110.55758 * 335.01309 * 8 7 6 35 35 H 1.08998 * 110.04778 * 147.49819 * 9 8 7 36 36 H 1.09002 * 110.05129 * 268.97325 * 9 8 7 37 37 H 1.00900 * 110.99835 * 218.66601 * 10 9 8 38 38 H 1.08997 * 110.37599 * 344.73778 * 13 11 10 39 39 H 1.08994 * 110.37831 * 107.09385 * 13 11 10 40 40 H 0.96997 * 124.97593 * 177.63076 * 16 14 13 41 41 H 1.07999 * 119.79031 * 179.97438 * 17 5 4 42 42 H 1.08005 * 119.99317 * 180.25559 * 18 17 5 43 43 H 0.97001 * 120.00089 * 354.14726 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 1.2974 2.3693 -0.0005 5 6 1.9344 3.6071 -0.0011 6 7 1.1783 4.7727 -0.0011 7 6 1.8342 6.0712 0.1721 8 6 2.6507 6.4557 -1.0732 9 6 1.6735 7.3093 -1.9042 10 7 0.7508 7.9400 -0.9469 11 6 0.7985 7.2100 0.3319 12 1 -0.1811 6.8492 0.6454 13 6 1.4799 8.1207 1.3812 14 6 2.4727 7.2237 2.0831 15 8 3.0149 7.4799 3.1373 16 7 2.6717 6.0872 1.3692 17 6 3.3294 3.6845 -0.0005 18 6 4.0833 2.5499 0.0059 19 6 3.4574 1.2881 0.0011 20 6 4.2336 0.1114 0.0026 21 1 3.8252 -0.8043 0.4038 22 6 5.5326 0.1299 -0.5152 23 7 5.8651 1.0189 -1.4173 24 14 6.7931 -1.1136 0.0798 25 1 8.0831 -0.8840 -0.6190 26 1 6.9883 -0.9586 1.5438 27 1 6.3099 -2.4870 -0.2125 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.2187 2.3170 -0.0004 32 1 0.2163 4.7266 -0.1158 33 1 3.5260 7.0409 -0.7913 34 1 2.9468 5.5647 -1.6269 35 1 2.2209 8.0743 -2.4549 36 1 1.1187 6.6753 -2.5958 37 1 -0.1888 7.9656 -1.3137 38 1 1.9952 8.9460 0.8900 39 1 0.7437 8.4997 2.0900 40 1 3.2914 5.3808 1.6099 41 1 3.8132 4.6501 -0.0014 42 1 5.1612 2.6179 0.0105 43 1 5.1906 1.6090 -1.7885 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163252377.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:01 Heat of formation + Delta-G solvation = -28.918041 kcal Electronic energy + Delta-G solvation = -27253.807560 eV Core-core repulsion = 23492.093516 eV Total energy + Delta-G solvation = -3761.714044 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.17001 -38.91890 -38.00931 -36.66121 -35.03645 -34.13313 -32.46553 -31.24537 -29.12528 -29.04156 -28.36383 -26.54510 -25.99434 -24.26905 -21.75224 -21.25361 -20.77849 -20.27455 -20.23777 -18.02365 -17.67588 -17.10866 -16.64283 -15.92289 -15.39801 -15.00376 -14.82562 -14.66400 -14.52136 -14.37807 -14.05958 -13.86983 -13.67766 -13.11621 -12.89057 -12.73174 -12.57779 -12.45657 -12.10433 -11.82197 -11.72831 -11.44930 -11.25900 -11.17288 -11.00016 -10.66625 -10.53646 -10.35823 -10.13134 -9.89013 -9.52922 -9.24051 -9.07712 -8.82845 -8.69322 -7.47792 -7.13920 -6.78287 -4.13272 2.58966 2.66315 2.72381 3.22063 3.26840 3.39098 3.42627 3.68560 3.80907 4.10597 4.18020 4.35147 4.48069 4.53100 4.59693 4.87688 4.96708 5.07435 5.25180 5.41467 5.56691 5.61720 5.65835 5.68304 5.73613 5.78814 5.85875 5.93816 6.01807 6.04971 6.42519 6.49519 6.66795 6.82117 6.87897 6.98840 7.02312 7.17348 7.37803 7.56715 7.74232 7.96456 8.09410 8.20297 8.30275 8.33265 8.40348 8.90932 8.95864 10.17017 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014924 B = 0.004059 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.753549 B = 6895.972399 C = 7602.794479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.308 6.308 3 C 0.045 3.955 4 C -0.221 4.221 5 C 0.099 3.901 6 N -0.746 5.746 7 C 0.387 3.613 8 C -0.153 4.153 9 C 0.054 3.946 10 N -0.671 5.671 11 C 0.069 3.931 12 H 0.097 0.903 13 C -0.139 4.139 14 C 0.520 3.480 15 O -0.536 6.536 16 N -0.724 5.724 17 C -0.174 4.174 18 C -0.165 4.165 19 C 0.060 3.940 20 C -0.511 4.511 21 H 0.076 0.924 22 C 0.038 3.962 23 N -0.809 5.809 24 Si 1.063 2.937 25 H -0.276 1.276 26 H -0.276 1.276 27 H -0.277 1.277 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.389 0.611 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.050 0.950 37 H 0.344 0.656 38 H 0.118 0.882 39 H 0.100 0.900 40 H 0.417 0.583 41 H 0.097 0.903 42 H 0.114 0.886 43 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.538 9.727 -1.698 14.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.222 6.222 3 C 0.000 4.000 4 C -0.243 4.243 5 C 0.003 3.997 6 N -0.384 5.384 7 C 0.211 3.789 8 C -0.194 4.194 9 C -0.075 4.075 10 N -0.301 5.301 11 C -0.043 4.043 12 H 0.115 0.885 13 C -0.180 4.180 14 C 0.306 3.694 15 O -0.413 6.413 16 N -0.385 5.385 17 C -0.196 4.196 18 C -0.185 4.185 19 C 0.056 3.944 20 C -0.540 4.540 21 H 0.094 0.906 22 C -0.182 4.182 23 N -0.434 5.434 24 Si 0.887 3.113 25 H -0.201 1.201 26 H -0.202 1.202 27 H -0.203 1.203 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.101 0.899 31 H 0.116 0.884 32 H 0.223 0.777 33 H 0.099 0.901 34 H 0.115 0.885 35 H 0.101 0.899 36 H 0.068 0.932 37 H 0.161 0.839 38 H 0.136 0.864 39 H 0.119 0.881 40 H 0.260 0.740 41 H 0.115 0.885 42 H 0.132 0.868 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.022 9.930 -1.130 12.816 hybrid contribution -2.626 -0.578 -0.156 2.694 sum -10.649 9.352 -1.286 14.231 Atomic orbital electron populations 1.22739 0.81654 1.01876 0.99821 1.86008 1.18264 1.28041 1.89877 1.18891 0.92079 0.82276 1.06743 1.20099 0.97220 0.91424 1.15599 1.16796 0.90226 0.84463 1.08183 1.44127 1.07567 1.01881 1.84821 1.20732 0.88117 0.84947 0.85111 1.23150 0.98625 1.01110 0.96492 1.22520 0.94183 0.96453 0.94372 1.61570 1.12623 1.52565 1.03292 1.23034 0.98087 0.91363 0.91788 0.88471 1.22456 0.98590 0.98919 0.98037 1.21242 0.82100 0.82433 0.83629 1.90736 1.52718 1.76120 1.21700 1.47190 1.43611 1.22423 1.25239 1.20045 0.91422 0.97569 1.10525 1.20516 0.98819 0.90956 1.08216 1.17016 0.87818 0.93808 0.95767 1.20222 0.99638 0.97108 1.37029 0.90569 1.26890 0.98919 0.99319 0.93075 1.70522 1.39703 1.15567 1.17583 0.83667 0.75434 0.75101 0.77085 1.20063 1.20159 1.20302 0.94248 0.94195 0.89908 0.88428 0.77650 0.90118 0.88510 0.89932 0.93169 0.83946 0.86380 0.88149 0.74008 0.88542 0.86827 0.89142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 9.81 101.05 0.99 1.57 16 2 O -0.31 -6.95 9.78 -18.71 -0.18 -7.13 16 3 C 0.05 1.08 6.71 -38.42 -0.26 0.82 16 4 C -0.22 -4.51 8.87 -39.29 -0.35 -4.86 16 5 C 0.10 1.90 6.30 -83.73 -0.53 1.37 16 6 N -0.75 -10.86 5.41 -47.69 -0.26 -11.12 16 7 C 0.39 5.02 0.96 -190.61 -0.18 4.83 16 8 C -0.15 -1.91 5.19 -25.75 -0.13 -2.04 16 9 C 0.05 0.52 7.56 -3.12 -0.02 0.49 16 10 N -0.67 -5.75 6.75 -103.68 -0.70 -6.45 16 11 C 0.07 0.69 4.28 -65.63 -0.28 0.41 16 12 H 0.10 0.83 7.97 -51.93 -0.41 0.42 16 13 C -0.14 -1.51 6.55 -26.78 -0.18 -1.69 16 14 C 0.52 7.92 8.46 -10.39 -0.09 7.83 16 15 O -0.54 -10.23 18.03 5.56 0.10 -10.13 16 16 N -0.72 -11.01 5.11 -49.12 -0.25 -11.26 16 17 C -0.17 -3.59 7.02 -39.75 -0.28 -3.87 16 18 C -0.16 -3.98 7.88 -39.32 -0.31 -4.29 16 19 C 0.06 1.54 5.31 -106.65 -0.57 0.98 16 20 C -0.51 -13.72 8.63 -37.95 -0.33 -14.05 16 21 H 0.08 2.08 7.71 -52.49 -0.40 1.67 16 22 C 0.04 0.96 4.93 -17.33 -0.09 0.88 16 23 N -0.81 -21.39 12.32 55.54 0.68 -20.71 16 24 Si 1.06 22.09 30.00 -169.99 -5.10 16.99 16 25 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 26 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 27 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 28 H 0.04 0.60 7.66 -51.93 -0.40 0.20 16 29 H 0.04 0.60 7.66 -51.93 -0.40 0.20 16 30 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.10 1.74 6.29 -52.48 -0.33 1.41 16 32 H 0.39 4.93 8.46 -40.82 -0.35 4.58 16 33 H 0.08 1.02 8.06 -51.93 -0.42 0.61 16 34 H 0.10 1.43 6.64 -51.93 -0.34 1.08 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.34 2.27 8.90 -39.29 -0.35 1.92 16 38 H 0.12 1.23 7.93 -51.93 -0.41 0.82 16 39 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.42 7.18 6.59 -40.82 -0.27 6.91 16 41 H 0.10 1.82 4.63 -52.49 -0.24 1.58 16 42 H 0.11 2.88 6.48 -52.48 -0.34 2.54 16 43 H 0.30 7.95 6.69 -40.82 -0.27 7.68 16 LS Contribution 341.45 15.07 5.15 5.15 Total: -1.00 -30.09 341.45 -8.58 -38.67 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: -5.43 Total: 17.63 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: -2.59 Total: -11.63 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: -0.52 Total: -49.54 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.08 Total: -17.26 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.10 Total: 16.99 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.09 -8.58 -38.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163252377.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.753 kcal (2) G-P(sol) polarization free energy of solvation -30.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds