Wall clock time and date at job start Tue Mar 31 2020 11:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35668 * 117.00187 * 2 1 4 4 C 1.38042 * 120.21102 * 359.97438 * 3 2 1 5 5 C 1.39210 * 119.98181 * 180.02562 * 4 3 2 6 6 N 1.38934 * 119.79794 * 180.02562 * 5 4 3 7 7 C 1.46499 * 119.99741 * 172.12787 * 6 5 4 8 8 C 1.53805 * 111.31765 * 71.12972 * 7 6 5 9 9 C 1.54077 * 103.79686 * 93.58907 * 8 7 6 10 10 N 1.47159 * 106.51644 * 28.23896 * 9 8 7 11 11 C 1.47331 * 109.38870 * 341.48442 * 10 9 8 12 12 H 1.09003 * 112.61053 * 236.46047 * 11 10 9 13 13 C 1.54743 * 108.13647 * 110.49560 * 11 10 9 14 14 C 1.51085 * 104.77074 * 225.91630 * 13 11 10 15 15 O 1.21283 * 124.89932 * 195.37240 * 14 13 11 16 16 N 1.35679 * 110.44348 * 15.24476 * 14 13 11 17 17 C 1.39715 * 120.40711 * 359.97438 * 5 4 3 18 18 C 1.36227 * 120.42641 * 359.73633 * 17 5 4 19 19 C 1.40852 * 120.01089 * 0.51894 * 18 17 5 20 20 C 1.40964 * 120.20307 * 179.75917 * 19 18 17 21 21 H 1.08000 * 119.99922 * 154.37620 * 20 19 18 22 22 C 1.39848 * 120.00152 * 334.38166 * 20 19 18 23 23 N 1.30949 * 119.99713 * 334.61552 * 22 20 19 24 24 Si 1.86797 * 120.00158 * 154.61802 * 22 20 19 25 25 H 1.48496 * 109.47412 * 179.97438 * 24 22 20 26 26 H 1.48497 * 109.46932 * 299.99926 * 24 22 20 27 27 H 1.48505 * 109.47265 * 59.99961 * 24 22 20 28 28 H 1.09006 * 109.46623 * 299.99679 * 1 2 3 29 29 H 1.09000 * 109.47307 * 59.99972 * 1 2 3 30 30 H 1.08994 * 109.47261 * 180.02562 * 1 2 3 31 31 H 1.08003 * 120.01040 * 0.03338 * 4 3 2 32 32 H 0.96993 * 119.99504 * 352.12513 * 6 5 4 33 33 H 1.08995 * 110.55789 * 212.17245 * 8 7 6 34 34 H 1.08998 * 110.55758 * 335.01309 * 8 7 6 35 35 H 1.08998 * 110.04778 * 147.49819 * 9 8 7 36 36 H 1.09002 * 110.05129 * 268.97325 * 9 8 7 37 37 H 1.00900 * 110.99835 * 218.66601 * 10 9 8 38 38 H 1.08997 * 110.37599 * 344.73778 * 13 11 10 39 39 H 1.08994 * 110.37831 * 107.09385 * 13 11 10 40 40 H 0.96997 * 124.97593 * 177.63076 * 16 14 13 41 41 H 1.07999 * 119.79031 * 179.97438 * 17 5 4 42 42 H 1.08005 * 119.99317 * 180.25559 * 18 17 5 43 43 H 0.97001 * 120.00089 * 354.14726 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 1.2974 2.3693 -0.0005 5 6 1.9344 3.6071 -0.0011 6 7 1.1783 4.7727 -0.0011 7 6 1.8342 6.0712 0.1721 8 6 2.6507 6.4557 -1.0732 9 6 1.6735 7.3093 -1.9042 10 7 0.7508 7.9400 -0.9469 11 6 0.7985 7.2100 0.3319 12 1 -0.1811 6.8492 0.6454 13 6 1.4799 8.1207 1.3812 14 6 2.4727 7.2237 2.0831 15 8 3.0149 7.4799 3.1373 16 7 2.6717 6.0872 1.3692 17 6 3.3294 3.6845 -0.0005 18 6 4.0833 2.5499 0.0059 19 6 3.4574 1.2881 0.0011 20 6 4.2336 0.1114 0.0026 21 1 3.8252 -0.8043 0.4038 22 6 5.5326 0.1299 -0.5152 23 7 5.8651 1.0189 -1.4173 24 14 6.7931 -1.1136 0.0798 25 1 8.0831 -0.8840 -0.6190 26 1 6.9883 -0.9586 1.5438 27 1 6.3099 -2.4870 -0.2125 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.2187 2.3170 -0.0004 32 1 0.2163 4.7266 -0.1158 33 1 3.5260 7.0409 -0.7913 34 1 2.9468 5.5647 -1.6269 35 1 2.2209 8.0743 -2.4549 36 1 1.1187 6.6753 -2.5958 37 1 -0.1888 7.9656 -1.3137 38 1 1.9952 8.9460 0.8900 39 1 0.7437 8.4997 2.0900 40 1 3.2914 5.3808 1.6099 41 1 3.8132 4.6501 -0.0014 42 1 5.1612 2.6179 0.0105 43 1 5.1906 1.6090 -1.7885 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163252377.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:00 Heat of formation + Delta-G solvation = -52.956421 kcal Electronic energy + Delta-G solvation = -27254.849942 eV Core-core repulsion = 23492.093516 eV Total energy + Delta-G solvation = -3762.756426 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.27518 -40.58828 -39.25976 -38.21588 -36.54402 -35.41209 -34.03383 -32.30113 -30.77746 -30.55891 -29.45178 -28.00297 -27.22926 -25.88343 -23.15465 -22.66208 -22.03415 -21.53785 -21.39732 -19.86144 -18.96495 -18.17759 -17.98742 -17.34396 -16.63733 -16.38671 -16.36098 -16.08095 -16.00169 -15.63626 -15.48967 -15.10853 -14.85957 -14.66226 -14.38615 -13.90017 -13.78637 -13.60119 -13.55942 -13.16866 -13.07772 -12.71985 -12.66080 -12.47190 -12.25127 -12.04779 -11.98230 -11.96914 -11.78848 -11.35824 -11.12624 -10.89895 -10.52941 -10.32118 -9.55534 -9.23851 -9.00492 -8.48867 -6.05876 0.87001 0.96618 1.41524 1.50798 1.63519 1.79503 2.17004 2.38900 2.51612 2.75153 2.80417 2.84448 3.31619 3.54683 3.56136 3.64991 3.96962 4.11563 4.17684 4.21490 4.25472 4.37175 4.40822 4.42457 4.67338 4.75500 4.77843 4.83026 4.88068 4.96068 5.02353 5.04417 5.11795 5.30593 5.54307 5.64697 5.70417 5.73612 5.85744 5.93700 6.13571 6.21107 6.42851 6.54060 6.62060 6.96474 7.03719 7.06849 7.19762 8.21037 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014924 B = 0.004059 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.753549 B = 6895.972399 C = 7602.794479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.340 6.340 3 C 0.042 3.958 4 C -0.229 4.229 5 C 0.140 3.860 6 N -0.730 5.730 7 C 0.376 3.624 8 C -0.155 4.155 9 C 0.062 3.938 10 N -0.662 5.662 11 C 0.085 3.915 12 H 0.125 0.875 13 C -0.127 4.127 14 C 0.513 3.487 15 O -0.583 6.583 16 N -0.733 5.733 17 C -0.184 4.184 18 C -0.168 4.168 19 C 0.013 3.987 20 C -0.553 4.553 21 H 0.056 0.944 22 C 0.001 3.999 23 N -0.836 5.836 24 Si 1.110 2.890 25 H -0.271 1.271 26 H -0.269 1.269 27 H -0.264 1.264 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.109 0.891 31 H 0.133 0.867 32 H 0.406 0.594 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.058 0.942 37 H 0.362 0.638 38 H 0.128 0.872 39 H 0.124 0.876 40 H 0.403 0.597 41 H 0.112 0.888 42 H 0.090 0.910 43 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.814 11.821 -1.988 18.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.254 6.254 3 C -0.003 4.003 4 C -0.252 4.252 5 C 0.041 3.959 6 N -0.368 5.368 7 C 0.201 3.799 8 C -0.196 4.196 9 C -0.067 4.067 10 N -0.293 5.293 11 C -0.027 4.027 12 H 0.143 0.857 13 C -0.167 4.167 14 C 0.302 3.698 15 O -0.462 6.462 16 N -0.391 5.391 17 C -0.206 4.206 18 C -0.189 4.189 19 C 0.010 3.990 20 C -0.583 4.583 21 H 0.075 0.925 22 C -0.211 4.211 23 N -0.462 5.462 24 Si 0.929 3.071 25 H -0.196 1.196 26 H -0.194 1.194 27 H -0.188 1.188 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.127 0.873 31 H 0.151 0.849 32 H 0.244 0.756 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.112 0.888 36 H 0.076 0.924 37 H 0.181 0.819 38 H 0.146 0.854 39 H 0.142 0.858 40 H 0.243 0.757 41 H 0.130 0.870 42 H 0.108 0.892 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.390 12.068 -1.453 16.658 hybrid contribution -1.875 -1.037 -0.045 2.143 sum -13.265 11.030 -1.498 17.317 Atomic orbital electron populations 1.23103 0.78345 1.04270 1.01114 1.85961 1.21770 1.27928 1.89760 1.19100 0.91812 0.83828 1.05594 1.20388 0.98877 0.90567 1.15333 1.16911 0.89904 0.85938 1.03152 1.44120 1.08220 1.01090 1.83406 1.21161 0.89197 0.85039 0.84490 1.23098 0.99402 1.00631 0.96420 1.22451 0.93759 0.96385 0.94058 1.61506 1.13701 1.51627 1.02479 1.23041 0.98036 0.89345 0.92312 0.85717 1.22494 0.97828 0.98140 0.98280 1.22042 0.82131 0.82655 0.82995 1.90710 1.54627 1.77019 1.23867 1.47384 1.43476 1.22260 1.25930 1.20135 0.92356 0.97135 1.10981 1.20435 0.98076 0.91881 1.08502 1.17327 0.89524 0.94093 0.98053 1.20228 1.01226 0.97027 1.39815 0.92546 1.28102 1.00474 1.00327 0.92243 1.70632 1.38976 1.17271 1.19341 0.83079 0.73422 0.73660 0.76927 1.19603 1.19385 1.18836 0.92787 0.92700 0.87262 0.84937 0.75647 0.90635 0.91071 0.88843 0.92400 0.81875 0.85412 0.85780 0.75717 0.87017 0.89195 0.90924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 9.81 113.37 1.11 1.92 16 2 O -0.34 -15.41 9.78 -89.85 -0.88 -16.29 16 3 C 0.04 2.03 6.71 23.02 0.15 2.18 16 4 C -0.23 -8.95 8.87 22.46 0.20 -8.75 16 5 C 0.14 5.12 6.30 38.61 0.24 5.36 16 6 N -0.73 -18.78 5.41 -304.80 -1.65 -20.43 16 7 C 0.38 8.66 0.96 89.20 0.09 8.74 16 8 C -0.15 -3.54 5.19 31.23 0.16 -3.38 16 9 C 0.06 0.96 7.56 86.62 0.66 1.62 16 10 N -0.66 -7.97 6.75 -481.93 -3.25 -11.22 16 11 C 0.08 1.28 4.28 46.03 0.20 1.47 16 12 H 0.13 1.32 7.97 -2.39 -0.02 1.30 16 13 C -0.13 -2.26 6.55 30.56 0.20 -2.06 16 14 C 0.51 14.78 8.46 87.64 0.74 15.52 16 15 O -0.58 -22.02 18.03 -3.04 -0.05 -22.08 16 16 N -0.73 -21.31 5.11 -427.20 -2.18 -23.49 16 17 C -0.18 -7.72 7.02 22.16 0.16 -7.57 16 18 C -0.17 -8.60 7.88 22.44 0.18 -8.42 16 19 C 0.01 0.73 5.31 -21.18 -0.11 0.62 16 20 C -0.55 -31.68 8.63 23.33 0.20 -31.47 16 21 H 0.06 3.31 7.71 -2.91 -0.02 3.28 16 22 C 0.00 0.08 4.93 85.21 0.42 0.50 16 23 N -0.84 -47.11 12.32 21.82 0.27 -46.84 16 24 Si 1.11 46.74 30.00 68.60 2.06 48.79 16 25 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 26 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 27 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 28 H 0.05 1.47 7.66 -2.38 -0.02 1.46 16 29 H 0.05 1.49 7.66 -2.39 -0.02 1.47 16 30 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 31 H 0.13 4.20 6.29 -2.91 -0.02 4.18 16 32 H 0.41 8.20 8.46 -92.71 -0.78 7.42 16 33 H 0.07 1.82 8.06 -2.39 -0.02 1.80 16 34 H 0.07 2.02 6.64 -2.39 -0.02 2.01 16 35 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.36 2.63 8.90 -89.69 -0.80 1.83 16 38 H 0.13 2.14 7.93 -2.39 -0.02 2.12 16 39 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.40 13.87 6.59 -92.71 -0.61 13.26 16 41 H 0.11 4.29 4.63 -2.91 -0.01 4.28 16 42 H 0.09 4.93 6.48 -2.91 -0.02 4.91 16 43 H 0.28 16.18 6.69 -92.71 -0.62 15.56 16 Total: -1.00 -71.99 341.45 -2.05 -74.04 By element: Atomic # 1 Polarization: 42.19 SS G_CDS: -0.95 Total: 41.24 kcal Atomic # 6 Polarization: -28.31 SS G_CDS: 4.59 Total: -23.71 kcal Atomic # 7 Polarization: -95.17 SS G_CDS: -6.82 Total: -101.99 kcal Atomic # 8 Polarization: -37.43 SS G_CDS: -0.93 Total: -38.37 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.06 Total: 48.79 kcal Total: -71.99 -2.05 -74.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163252377.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.086 kcal (2) G-P(sol) polarization free energy of solvation -71.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds