Wall clock time and date at job start Tue Mar 31 2020 11:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35671 * 117.00592 * 2 1 4 4 C 1.38040 * 120.20488 * 0.23083 * 3 2 1 5 5 C 1.39220 * 119.97556 * 180.27908 * 4 3 2 6 6 N 1.38926 * 119.79710 * 179.75664 * 5 4 3 7 7 C 1.46494 * 119.99590 * 173.11618 * 6 5 4 8 8 C 1.53804 * 111.31657 * 184.81698 * 7 6 5 9 9 C 1.54075 * 103.79401 * 266.41849 * 8 7 6 10 10 N 1.47151 * 106.51842 * 331.75449 * 9 8 7 11 11 C 1.47331 * 109.38711 * 18.51023 * 10 9 8 12 12 H 1.09009 * 112.60399 * 123.54983 * 11 10 9 13 13 C 1.54742 * 108.13804 * 249.51520 * 11 10 9 14 14 C 1.51085 * 104.76572 * 134.09280 * 13 11 10 15 15 O 1.21281 * 124.89488 * 164.66209 * 14 13 11 16 16 N 1.34581 * 110.27937 * 345.28179 * 14 13 11 17 17 C 1.39722 * 120.40528 * 359.73986 * 5 4 3 18 18 C 1.36227 * 120.43013 * 359.97438 * 17 5 4 19 19 C 1.40855 * 120.00601 * 0.02562 * 18 17 5 20 20 C 1.40969 * 120.19982 * 179.97438 * 19 18 17 21 21 H 1.08000 * 120.00378 * 206.41903 * 20 19 18 22 22 C 1.39843 * 120.00027 * 26.41479 * 20 19 18 23 23 N 1.30960 * 119.99789 * 26.61383 * 22 20 19 24 24 Si 1.86796 * 120.00244 * 206.61288 * 22 20 19 25 25 H 1.48504 * 109.47197 * 180.02562 * 24 22 20 26 26 H 1.48504 * 109.46983 * 300.00049 * 24 22 20 27 27 H 1.48495 * 109.47297 * 60.00277 * 24 22 20 28 28 H 1.08996 * 109.47110 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46909 * 300.00786 * 1 2 3 30 30 H 1.08997 * 109.46808 * 60.00377 * 1 2 3 31 31 H 1.07995 * 120.01690 * 0.02562 * 4 3 2 32 32 H 0.96992 * 119.99872 * 353.12531 * 6 5 4 33 33 H 1.09004 * 110.55772 * 24.99514 * 8 7 6 34 34 H 1.08998 * 110.56569 * 147.83283 * 8 7 6 35 35 H 1.09003 * 110.04238 * 212.49580 * 9 8 7 36 36 H 1.08999 * 110.05090 * 91.02673 * 9 8 7 37 37 H 1.00894 * 111.00036 * 255.68980 * 10 9 8 38 38 H 1.09000 * 110.37657 * 252.91093 * 13 11 10 39 39 H 1.08995 * 110.37904 * 15.16164 * 13 11 10 40 40 H 0.96994 * 124.32993 * 181.95745 * 16 14 13 41 41 H 1.07999 * 119.78394 * 180.02562 * 17 5 4 42 42 H 1.07997 * 119.99597 * 180.02562 * 18 17 5 43 43 H 0.97004 * 119.99631 * 357.32795 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2088 0.0000 4 6 1.2975 2.3692 0.0048 5 6 1.9346 3.6071 -0.0011 6 7 1.1786 4.7726 -0.0013 7 6 1.8374 6.0729 0.1446 8 6 0.8095 7.2132 0.2374 9 6 0.6660 7.6978 -1.2181 10 7 1.9484 7.4145 -1.8818 11 6 2.6943 6.4146 -1.0980 12 1 2.9580 5.5343 -1.6844 13 6 3.9185 7.1160 -0.4626 14 6 3.9273 6.6488 0.9742 15 8 4.8666 6.7581 1.7335 16 7 2.7478 6.0814 1.2874 17 6 3.3297 3.6844 -0.0064 18 6 4.0836 2.5497 -0.0054 19 6 3.4575 1.2880 0.0006 20 6 4.2337 0.1112 0.0011 21 1 3.8303 -0.8020 -0.4109 22 6 5.5260 0.1263 0.5352 23 7 5.8405 0.9939 1.4643 24 14 6.8038 -1.0911 -0.0768 25 1 8.0833 -0.8699 0.6437 26 1 6.3283 -2.4755 0.1735 27 1 7.0154 -0.8962 -1.5337 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.2189 2.3170 0.0090 32 1 0.2147 4.7254 -0.0980 33 1 -0.1435 6.8399 0.6123 34 1 1.1840 8.0156 0.8729 35 1 0.4640 8.7688 -1.2371 36 1 -0.1394 7.1565 -1.7146 37 1 2.4889 8.2583 -1.9992 38 1 4.8352 6.8101 -0.9668 39 1 3.8029 8.1988 -0.5107 40 1 2.5230 5.7359 2.1654 41 1 3.8135 4.6499 -0.0105 42 1 5.1614 2.6176 -0.0091 43 1 5.1888 1.6512 1.7546 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163252378.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:04 Heat of formation + Delta-G solvation = -23.085628 kcal Electronic energy + Delta-G solvation = -27596.174467 eV Core-core repulsion = 23834.713335 eV Total energy + Delta-G solvation = -3761.461131 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.41616 -38.79006 -37.98101 -36.54918 -35.01201 -34.05217 -32.66169 -31.25906 -29.02892 -28.97828 -28.08499 -26.46276 -25.90851 -24.12259 -22.08213 -21.06811 -20.90785 -20.49463 -20.10541 -18.00741 -17.62660 -16.71256 -16.66179 -15.79478 -15.25832 -15.10252 -14.96498 -14.75133 -14.38007 -14.21848 -13.90744 -13.86316 -13.80803 -13.30590 -12.85334 -12.66314 -12.45838 -12.41014 -12.11664 -11.99342 -11.53023 -11.40506 -11.31500 -11.08938 -10.96191 -10.69785 -10.46536 -10.30194 -10.07613 -9.93842 -9.52829 -9.14998 -9.01087 -8.68769 -8.53750 -7.39039 -7.03214 -6.72048 -4.05289 2.61169 2.75202 2.84176 3.25274 3.28978 3.39078 3.46929 3.76986 3.84093 4.15332 4.31351 4.33739 4.42801 4.58764 4.67301 4.75149 4.92685 5.01264 5.10602 5.38378 5.48790 5.49404 5.63533 5.67829 5.74264 5.77945 5.85969 6.00438 6.05167 6.19274 6.54794 6.59413 6.68570 6.85241 6.95164 7.04500 7.12838 7.20590 7.48063 7.66034 7.83326 8.04338 8.17681 8.28003 8.31669 8.43349 8.49729 8.99559 9.05249 10.25047 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014067 B = 0.004761 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.019478 B = 5880.082952 C = 7218.432712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.308 6.308 3 C 0.041 3.959 4 C -0.219 4.219 5 C 0.094 3.906 6 N -0.739 5.739 7 C 0.389 3.611 8 C -0.161 4.161 9 C 0.054 3.946 10 N -0.674 5.674 11 C 0.069 3.931 12 H 0.129 0.871 13 C -0.181 4.181 14 C 0.526 3.474 15 O -0.529 6.529 16 N -0.719 5.719 17 C -0.157 4.157 18 C -0.170 4.170 19 C 0.062 3.938 20 C -0.513 4.513 21 H 0.077 0.923 22 C 0.034 3.966 23 N -0.807 5.807 24 Si 1.067 2.933 25 H -0.276 1.276 26 H -0.278 1.278 27 H -0.276 1.276 28 H 0.081 0.919 29 H 0.039 0.961 30 H 0.039 0.961 31 H 0.097 0.903 32 H 0.392 0.608 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.342 0.658 38 H 0.108 0.892 39 H 0.103 0.897 40 H 0.410 0.590 41 H 0.094 0.906 42 H 0.109 0.891 43 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.467 11.735 -4.309 16.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.222 6.222 3 C -0.004 4.004 4 C -0.241 4.241 5 C -0.001 4.001 6 N -0.377 5.377 7 C 0.213 3.787 8 C -0.202 4.202 9 C -0.075 4.075 10 N -0.305 5.305 11 C -0.043 4.043 12 H 0.147 0.853 13 C -0.222 4.222 14 C 0.312 3.688 15 O -0.404 6.404 16 N -0.376 5.376 17 C -0.179 4.179 18 C -0.191 4.191 19 C 0.058 3.942 20 C -0.542 4.542 21 H 0.095 0.905 22 C -0.186 4.186 23 N -0.432 5.432 24 Si 0.892 3.108 25 H -0.201 1.201 26 H -0.204 1.204 27 H -0.201 1.201 28 H 0.100 0.900 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.115 0.885 32 H 0.226 0.774 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.161 0.839 38 H 0.127 0.873 39 H 0.122 0.878 40 H 0.249 0.751 41 H 0.112 0.888 42 H 0.127 0.873 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.374 10.785 -4.200 14.285 hybrid contribution -2.224 1.048 0.992 2.651 sum -10.598 11.833 -3.208 16.205 Atomic orbital electron populations 1.22727 0.81766 1.01776 0.99787 1.86005 1.18165 1.28088 1.89984 1.18858 0.92024 0.82242 1.07313 1.20099 0.97139 0.91401 1.15467 1.16776 0.90167 0.84325 1.08869 1.44030 1.07351 1.01441 1.84896 1.20640 0.87351 0.85295 0.85399 1.23147 1.00068 0.97826 0.99175 1.22543 0.93484 1.00415 0.91095 1.61257 1.05377 1.14074 1.49750 1.23680 0.91232 0.96393 0.93004 0.85325 1.23169 1.02403 1.01890 0.94775 1.20560 0.81768 0.76815 0.89697 1.90771 1.36125 1.57270 1.56264 1.46595 1.15545 1.61351 1.14109 1.20115 0.91419 0.97581 1.08801 1.20471 0.98592 0.91094 1.08919 1.17022 0.87863 0.93765 0.95513 1.20204 0.99541 0.97238 1.37266 0.90519 1.26918 0.98971 1.00281 0.92417 1.70567 1.40724 1.14367 1.17544 0.83596 0.75281 0.75023 0.76927 1.20104 1.20378 1.20123 0.90000 0.94282 0.94242 0.88473 0.77383 0.89532 0.89914 0.91280 0.90175 0.83917 0.87318 0.87845 0.75098 0.88809 0.87262 0.88988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 9.81 101.05 0.99 1.59 16 2 O -0.31 -7.14 9.79 -18.72 -0.18 -7.32 16 3 C 0.04 0.99 6.71 -38.43 -0.26 0.74 16 4 C -0.22 -4.59 8.87 -39.29 -0.35 -4.94 16 5 C 0.09 1.87 6.32 -83.73 -0.53 1.34 16 6 N -0.74 -10.97 5.44 -47.69 -0.26 -11.23 16 7 C 0.39 4.97 1.14 -190.61 -0.22 4.75 16 8 C -0.16 -1.48 6.35 -25.75 -0.16 -1.64 16 9 C 0.05 0.45 7.56 -3.13 -0.02 0.42 16 10 N -0.67 -6.69 7.26 -103.69 -0.75 -7.44 16 11 C 0.07 0.87 3.49 -65.64 -0.23 0.64 16 12 H 0.13 2.03 6.82 -51.92 -0.35 1.67 16 13 C -0.18 -2.23 6.05 -26.78 -0.16 -2.39 16 14 C 0.53 8.53 6.90 -10.88 -0.08 8.45 16 15 O -0.53 -10.78 18.03 5.56 0.10 -10.68 16 16 N -0.72 -10.58 4.32 -49.40 -0.21 -10.79 16 17 C -0.16 -3.46 7.67 -39.75 -0.30 -3.76 16 18 C -0.17 -4.34 7.81 -39.32 -0.31 -4.65 16 19 C 0.06 1.67 5.31 -106.65 -0.57 1.10 16 20 C -0.51 -14.22 8.62 -37.95 -0.33 -14.55 16 21 H 0.08 2.14 7.73 -52.49 -0.41 1.74 16 22 C 0.03 0.91 4.89 -17.32 -0.08 0.82 16 23 N -0.81 -22.57 12.61 55.54 0.70 -21.87 16 24 Si 1.07 22.85 30.01 -169.99 -5.10 17.75 16 25 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 26 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 27 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 28 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.04 0.61 7.65 -51.93 -0.40 0.21 16 30 H 0.04 0.60 7.67 -51.93 -0.40 0.21 16 31 H 0.10 1.77 6.29 -52.49 -0.33 1.44 16 32 H 0.39 5.06 8.40 -40.82 -0.34 4.72 16 33 H 0.09 0.71 7.90 -51.93 -0.41 0.30 16 34 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.34 2.71 7.69 -39.30 -0.30 2.41 16 38 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.10 0.97 7.31 -51.93 -0.38 0.59 16 40 H 0.41 6.20 8.96 -40.82 -0.37 5.83 16 41 H 0.09 1.91 3.29 -52.49 -0.17 1.74 16 42 H 0.11 2.95 6.55 -52.49 -0.34 2.60 16 43 H 0.30 8.53 6.38 -40.82 -0.26 8.27 16 LS Contribution 339.59 15.07 5.12 5.12 Total: -1.00 -32.04 339.59 -8.57 -40.61 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: -5.37 Total: 17.94 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: -2.60 Total: -12.07 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.53 Total: -51.33 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.08 Total: -18.00 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.10 Total: 17.75 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.04 -8.57 -40.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163252378.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.521 kcal (2) G-P(sol) polarization free energy of solvation -32.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds