Wall clock time and date at job start Tue Mar 31 2020 11:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35671 * 117.00592 * 2 1 4 4 C 1.38040 * 120.20488 * 0.23083 * 3 2 1 5 5 C 1.39220 * 119.97556 * 180.27908 * 4 3 2 6 6 N 1.38926 * 119.79710 * 179.75664 * 5 4 3 7 7 C 1.46494 * 119.99590 * 173.11618 * 6 5 4 8 8 C 1.53804 * 111.31657 * 184.81698 * 7 6 5 9 9 C 1.54075 * 103.79401 * 266.41849 * 8 7 6 10 10 N 1.47151 * 106.51842 * 331.75449 * 9 8 7 11 11 C 1.47331 * 109.38711 * 18.51023 * 10 9 8 12 12 H 1.09009 * 112.60399 * 123.54983 * 11 10 9 13 13 C 1.54742 * 108.13804 * 249.51520 * 11 10 9 14 14 C 1.51085 * 104.76572 * 134.09280 * 13 11 10 15 15 O 1.21281 * 124.89488 * 164.66209 * 14 13 11 16 16 N 1.34581 * 110.27937 * 345.28179 * 14 13 11 17 17 C 1.39722 * 120.40528 * 359.73986 * 5 4 3 18 18 C 1.36227 * 120.43013 * 359.97438 * 17 5 4 19 19 C 1.40855 * 120.00601 * 0.02562 * 18 17 5 20 20 C 1.40969 * 120.19982 * 179.97438 * 19 18 17 21 21 H 1.08000 * 120.00378 * 206.41903 * 20 19 18 22 22 C 1.39843 * 120.00027 * 26.41479 * 20 19 18 23 23 N 1.30960 * 119.99789 * 26.61383 * 22 20 19 24 24 Si 1.86796 * 120.00244 * 206.61288 * 22 20 19 25 25 H 1.48504 * 109.47197 * 180.02562 * 24 22 20 26 26 H 1.48504 * 109.46983 * 300.00049 * 24 22 20 27 27 H 1.48495 * 109.47297 * 60.00277 * 24 22 20 28 28 H 1.08996 * 109.47110 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46909 * 300.00786 * 1 2 3 30 30 H 1.08997 * 109.46808 * 60.00377 * 1 2 3 31 31 H 1.07995 * 120.01690 * 0.02562 * 4 3 2 32 32 H 0.96992 * 119.99872 * 353.12531 * 6 5 4 33 33 H 1.09004 * 110.55772 * 24.99514 * 8 7 6 34 34 H 1.08998 * 110.56569 * 147.83283 * 8 7 6 35 35 H 1.09003 * 110.04238 * 212.49580 * 9 8 7 36 36 H 1.08999 * 110.05090 * 91.02673 * 9 8 7 37 37 H 1.00894 * 111.00036 * 255.68980 * 10 9 8 38 38 H 1.09000 * 110.37657 * 252.91093 * 13 11 10 39 39 H 1.08995 * 110.37904 * 15.16164 * 13 11 10 40 40 H 0.96994 * 124.32993 * 181.95745 * 16 14 13 41 41 H 1.07999 * 119.78394 * 180.02562 * 17 5 4 42 42 H 1.07997 * 119.99597 * 180.02562 * 18 17 5 43 43 H 0.97004 * 119.99631 * 357.32795 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2088 0.0000 4 6 1.2975 2.3692 0.0048 5 6 1.9346 3.6071 -0.0011 6 7 1.1786 4.7726 -0.0013 7 6 1.8374 6.0729 0.1446 8 6 0.8095 7.2132 0.2374 9 6 0.6660 7.6978 -1.2181 10 7 1.9484 7.4145 -1.8818 11 6 2.6943 6.4146 -1.0980 12 1 2.9580 5.5343 -1.6844 13 6 3.9185 7.1160 -0.4626 14 6 3.9273 6.6488 0.9742 15 8 4.8666 6.7581 1.7335 16 7 2.7478 6.0814 1.2874 17 6 3.3297 3.6844 -0.0064 18 6 4.0836 2.5497 -0.0054 19 6 3.4575 1.2880 0.0006 20 6 4.2337 0.1112 0.0011 21 1 3.8303 -0.8020 -0.4109 22 6 5.5260 0.1263 0.5352 23 7 5.8405 0.9939 1.4643 24 14 6.8038 -1.0911 -0.0768 25 1 8.0833 -0.8699 0.6437 26 1 6.3283 -2.4755 0.1735 27 1 7.0154 -0.8962 -1.5337 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.2189 2.3170 0.0090 32 1 0.2147 4.7254 -0.0980 33 1 -0.1435 6.8399 0.6123 34 1 1.1840 8.0156 0.8729 35 1 0.4640 8.7688 -1.2371 36 1 -0.1394 7.1565 -1.7146 37 1 2.4889 8.2583 -1.9992 38 1 4.8352 6.8101 -0.9668 39 1 3.8029 8.1988 -0.5107 40 1 2.5230 5.7359 2.1654 41 1 3.8135 4.6499 -0.0105 42 1 5.1614 2.6176 -0.0091 43 1 5.1888 1.6512 1.7546 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163252378.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:03 Heat of formation + Delta-G solvation = -49.478599 kcal Electronic energy + Delta-G solvation = -27597.318952 eV Core-core repulsion = 23834.713335 eV Total energy + Delta-G solvation = -3762.605617 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.56689 -40.53678 -39.25857 -38.18432 -36.54385 -35.41840 -34.19188 -32.41544 -30.77063 -30.52454 -29.19714 -27.98417 -27.10609 -25.87238 -23.20719 -22.64415 -22.36586 -21.73749 -21.31834 -19.89085 -19.02506 -18.18979 -17.86914 -17.18466 -16.48937 -16.39966 -16.34141 -16.15659 -15.98966 -15.72739 -15.48503 -15.09132 -14.91654 -14.65085 -14.50475 -14.15437 -13.82732 -13.58863 -13.39358 -13.14789 -13.04340 -12.84378 -12.63650 -12.38179 -12.24209 -12.08281 -11.97827 -11.96486 -11.81318 -11.36648 -11.27282 -10.87030 -10.42459 -10.31766 -9.49946 -9.22837 -8.98428 -8.47972 -6.05684 0.88907 1.00755 1.33794 1.49198 1.63950 1.79213 2.14748 2.38467 2.51151 2.74997 2.85768 2.91332 3.29065 3.47056 3.54993 3.67439 3.71086 4.13587 4.19262 4.19645 4.27149 4.39468 4.40538 4.44728 4.61416 4.69309 4.74442 4.81344 4.84103 4.98084 5.04489 5.11038 5.15089 5.31986 5.54783 5.63994 5.75151 5.79426 5.83425 5.92837 6.14864 6.22050 6.45144 6.56370 6.63940 6.97530 7.05459 7.06906 7.22972 8.20066 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014067 B = 0.004761 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.019478 B = 5880.082952 C = 7218.432712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.340 6.340 3 C 0.041 3.959 4 C -0.227 4.227 5 C 0.139 3.861 6 N -0.725 5.725 7 C 0.379 3.621 8 C -0.149 4.149 9 C 0.056 3.944 10 N -0.675 5.675 11 C 0.073 3.927 12 H 0.096 0.904 13 C -0.171 4.171 14 C 0.516 3.484 15 O -0.580 6.580 16 N -0.718 5.718 17 C -0.175 4.175 18 C -0.175 4.175 19 C 0.015 3.985 20 C -0.554 4.554 21 H 0.060 0.940 22 C -0.004 4.004 23 N -0.841 5.841 24 Si 1.116 2.884 25 H -0.274 1.274 26 H -0.262 1.262 27 H -0.263 1.263 28 H 0.109 0.891 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.135 0.865 32 H 0.409 0.591 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.357 0.643 38 H 0.104 0.896 39 H 0.142 0.858 40 H 0.406 0.594 41 H 0.107 0.893 42 H 0.080 0.920 43 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.738 14.001 -5.498 20.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.254 6.254 3 C -0.005 4.005 4 C -0.249 4.249 5 C 0.040 3.960 6 N -0.363 5.363 7 C 0.204 3.796 8 C -0.189 4.189 9 C -0.073 4.073 10 N -0.307 5.307 11 C -0.039 4.039 12 H 0.114 0.886 13 C -0.213 4.213 14 C 0.304 3.696 15 O -0.460 6.460 16 N -0.373 5.373 17 C -0.197 4.197 18 C -0.196 4.196 19 C 0.011 3.989 20 C -0.584 4.584 21 H 0.078 0.922 22 C -0.216 4.216 23 N -0.468 5.468 24 Si 0.934 3.066 25 H -0.199 1.199 26 H -0.186 1.186 27 H -0.188 1.188 28 H 0.127 0.873 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.153 0.847 32 H 0.246 0.754 33 H 0.122 0.878 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.101 0.899 37 H 0.177 0.823 38 H 0.123 0.877 39 H 0.159 0.841 40 H 0.244 0.756 41 H 0.125 0.875 42 H 0.099 0.901 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.743 13.095 -5.422 18.406 hybrid contribution -1.558 0.553 1.306 2.107 sum -13.301 13.648 -4.116 19.496 Atomic orbital electron populations 1.23108 0.78318 1.04265 1.01155 1.85958 1.21795 1.27864 1.89811 1.19059 0.91676 0.83896 1.05823 1.20408 0.98917 0.90467 1.15124 1.16883 0.89658 0.86032 1.03401 1.44070 1.07998 1.00757 1.83450 1.21147 0.88394 0.85318 0.84751 1.23136 0.99335 0.96083 1.00355 1.22667 0.92320 1.02482 0.89862 1.61171 1.05947 1.14346 1.49231 1.23381 0.91616 0.96339 0.92593 0.88605 1.23210 1.02303 1.04084 0.91659 1.21234 0.81240 0.76310 0.90863 1.90743 1.37809 1.59410 1.57989 1.46708 1.15620 1.60552 1.14455 1.20224 0.92591 0.97053 1.09822 1.20370 0.97611 0.92240 1.09385 1.17324 0.89692 0.93952 0.97887 1.20221 1.01042 0.97221 1.39901 0.92193 1.28255 1.00719 1.01250 0.91395 1.70698 1.40181 1.16075 1.19800 0.83022 0.72944 0.73684 0.76972 1.19885 1.18628 1.18802 0.87263 0.92953 0.92453 0.84715 0.75382 0.87751 0.88773 0.88157 0.89926 0.82285 0.87718 0.84070 0.75560 0.87486 0.90130 0.91181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 9.81 113.37 1.11 1.93 16 2 O -0.34 -15.75 9.79 -89.88 -0.88 -16.63 16 3 C 0.04 2.02 6.71 23.02 0.15 2.18 16 4 C -0.23 -9.11 8.87 22.46 0.20 -8.91 16 5 C 0.14 5.29 6.32 38.61 0.24 5.53 16 6 N -0.73 -19.11 5.44 -304.80 -1.66 -20.77 16 7 C 0.38 8.52 1.14 89.20 0.10 8.62 16 8 C -0.15 -1.98 6.35 31.23 0.20 -1.78 16 9 C 0.06 0.62 7.56 86.62 0.66 1.27 16 10 N -0.67 -10.60 7.26 -481.95 -3.50 -14.11 16 11 C 0.07 1.67 3.49 46.02 0.16 1.83 16 12 H 0.10 2.90 6.82 -2.38 -0.02 2.88 16 13 C -0.17 -3.92 6.05 30.56 0.18 -3.73 16 14 C 0.52 16.48 6.90 87.81 0.61 17.08 16 15 O -0.58 -24.22 18.03 -3.03 -0.05 -24.27 16 16 N -0.72 -20.13 4.32 -428.69 -1.85 -21.98 16 17 C -0.17 -7.82 7.67 22.16 0.17 -7.65 16 18 C -0.18 -9.49 7.81 22.44 0.18 -9.31 16 19 C 0.01 0.84 5.31 -21.18 -0.11 0.73 16 20 C -0.55 -32.72 8.62 23.33 0.20 -32.52 16 21 H 0.06 3.58 7.73 -2.91 -0.02 3.56 16 22 C 0.00 -0.22 4.89 85.21 0.42 0.19 16 23 N -0.84 -50.48 12.61 21.82 0.28 -50.20 16 24 Si 1.12 48.36 30.01 68.60 2.06 50.42 16 25 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 26 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 27 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 28 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 29 H 0.05 1.48 7.65 -2.39 -0.02 1.46 16 30 H 0.06 1.57 7.67 -2.39 -0.02 1.55 16 31 H 0.14 4.36 6.29 -2.91 -0.02 4.34 16 32 H 0.41 8.56 8.40 -92.71 -0.78 7.78 16 33 H 0.10 1.10 7.90 -2.38 -0.02 1.08 16 34 H 0.09 1.15 8.08 -2.39 -0.02 1.13 16 35 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.36 4.01 7.69 -89.70 -0.69 3.32 16 38 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 39 H 0.14 2.14 7.31 -2.39 -0.02 2.12 16 40 H 0.41 11.90 8.96 -92.71 -0.83 11.07 16 41 H 0.11 4.45 3.29 -2.91 -0.01 4.44 16 42 H 0.08 4.73 6.55 -2.91 -0.02 4.71 16 43 H 0.28 17.27 6.38 -92.71 -0.59 16.68 16 Total: -1.00 -77.75 339.59 -2.17 -79.92 By element: Atomic # 1 Polarization: 43.20 SS G_CDS: -1.03 Total: 42.17 kcal Atomic # 6 Polarization: -29.01 SS G_CDS: 4.47 Total: -24.54 kcal Atomic # 7 Polarization: -100.33 SS G_CDS: -6.73 Total: -107.06 kcal Atomic # 8 Polarization: -39.97 SS G_CDS: -0.93 Total: -40.90 kcal Atomic # 14 Polarization: 48.36 SS G_CDS: 2.06 Total: 50.42 kcal Total: -77.75 -2.17 -79.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163252378.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.445 kcal (2) G-P(sol) polarization free energy of solvation -77.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds