Wall clock time and date at job start Tue Mar 31 2020 11:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35668 * 117.00449 * 2 1 4 4 C 1.38045 * 120.21076 * 0.22931 * 3 2 1 5 5 C 1.39209 * 119.97685 * 180.28134 * 4 3 2 6 6 N 1.38930 * 119.79465 * 179.76595 * 5 4 3 7 7 C 1.46505 * 119.99742 * 179.97438 * 6 5 4 8 8 C 1.53005 * 109.46800 * 179.97438 * 7 6 5 9 9 C 1.52995 * 109.46875 * 179.97438 * 8 7 6 10 10 C 1.53004 * 109.46941 * 179.97438 * 9 8 7 11 11 H 1.09002 * 110.53505 * 54.30418 * 10 9 8 12 12 C 1.51438 * 110.61067 * 291.45081 * 10 9 8 13 13 N 1.27918 * 106.97732 * 241.53985 * 12 10 9 14 14 N 1.39150 * 113.21470 * 359.85477 * 13 12 10 15 15 C 1.34952 * 111.12031 * 0.09970 * 14 13 12 16 16 O 1.21302 * 127.49830 * 180.02562 * 15 14 13 17 17 C 1.39716 * 120.40944 * 359.74037 * 5 4 3 18 18 C 1.36226 * 120.42915 * 359.97438 * 17 5 4 19 19 C 1.40854 * 120.00986 * 0.02562 * 18 17 5 20 20 C 1.40971 * 120.20453 * 179.97438 * 19 18 17 21 21 H 1.07991 * 119.99855 * 154.58013 * 20 19 18 22 22 C 1.39843 * 119.99569 * 334.58003 * 20 19 18 23 23 N 1.30950 * 120.00234 * 334.53362 * 22 20 19 24 24 Si 1.86800 * 119.99744 * 154.53447 * 22 20 19 25 25 H 1.48501 * 109.47162 * 179.97438 * 24 22 20 26 26 H 1.48497 * 109.47080 * 299.99868 * 24 22 20 27 27 H 1.48504 * 109.47001 * 60.00264 * 24 22 20 28 28 H 1.09001 * 109.47531 * 180.02562 * 1 2 3 29 29 H 1.09011 * 109.47065 * 300.00717 * 1 2 3 30 30 H 1.09002 * 109.47139 * 60.00022 * 1 2 3 31 31 H 1.07997 * 120.00764 * 0.02562 * 4 3 2 32 32 H 0.96996 * 120.00106 * 359.97438 * 6 5 4 33 33 H 1.08995 * 109.46981 * 299.99705 * 7 6 5 34 34 H 1.09000 * 109.46969 * 60.00091 * 7 6 5 35 35 H 1.08999 * 109.46896 * 300.00067 * 8 7 6 36 36 H 1.09002 * 109.46965 * 59.99848 * 8 7 6 37 37 H 1.08999 * 109.47515 * 299.99813 * 9 8 7 38 38 H 1.09000 * 109.46829 * 60.00223 * 9 8 7 39 39 H 1.07997 * 126.41886 * 61.44744 * 12 10 9 40 40 H 0.96996 * 124.43776 * 180.11610 * 14 13 12 41 41 H 1.07997 * 119.78964 * 179.97438 * 17 5 4 42 42 H 1.07999 * 119.99509 * 180.02562 * 18 17 5 43 43 H 0.97006 * 120.00022 * 354.17150 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 1.2975 2.3693 0.0048 5 6 1.9346 3.6070 -0.0012 6 7 1.1786 4.7726 -0.0013 7 6 1.8445 6.0776 -0.0069 8 6 0.7913 7.1875 -0.0064 9 6 1.4867 8.5503 -0.0117 10 6 0.4336 9.6602 -0.0119 11 1 -0.2595 9.5297 0.8192 12 6 -0.3128 9.6867 -1.3293 13 7 -0.0924 10.8293 -1.8605 14 7 0.7258 11.6458 -1.0857 15 6 1.0949 11.0236 0.0535 16 8 1.8014 11.4600 0.9377 17 6 3.3296 3.6843 -0.0065 18 6 4.0835 2.5497 -0.0054 19 6 3.4575 1.2879 0.0005 20 6 4.2336 0.1111 0.0011 21 1 3.8272 -0.8035 0.4067 22 6 5.5298 0.1283 -0.5236 23 7 5.8573 1.0139 -1.4309 24 14 6.7940 -1.1122 0.0699 25 1 8.0803 -0.8848 -0.6366 26 1 6.9968 -0.9514 1.5322 27 1 6.3100 -2.4870 -0.2146 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2188 2.3170 0.0089 32 1 0.2099 4.7224 0.0024 33 1 2.4705 6.1699 0.8805 34 1 2.4640 6.1654 -0.8994 35 1 0.1656 7.0950 -0.8941 36 1 0.1714 7.0997 0.8858 37 1 2.1122 8.6425 0.8762 38 1 2.1069 8.6382 -0.9038 39 1 -0.9150 8.8904 -1.7412 40 1 0.9952 12.5444 -1.3321 41 1 3.8135 4.6498 -0.0115 42 1 5.1614 2.6176 -0.0092 43 1 5.1806 1.6024 -1.8007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164375781.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:07 Heat of formation + Delta-G solvation = -5.027442 kcal Electronic energy + Delta-G solvation = -25087.598031 eV Core-core repulsion = 21326.919962 eV Total energy + Delta-G solvation = -3760.678070 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.71070 -38.88594 -37.85521 -37.18473 -35.86418 -34.49058 -32.73867 -31.42364 -29.85264 -28.96616 -28.07883 -26.42724 -25.09580 -23.76098 -22.70964 -21.62457 -21.20604 -20.69786 -20.09000 -18.23951 -17.92450 -16.81497 -16.48885 -15.98418 -15.76777 -15.26175 -15.09711 -14.72587 -14.62897 -14.50899 -14.24605 -14.11218 -13.78887 -13.38337 -12.93028 -12.80667 -12.57733 -12.54109 -12.24432 -11.81656 -11.66688 -11.39038 -11.31361 -11.07621 -10.94612 -10.90596 -10.57226 -10.29122 -10.26323 -10.18921 -9.95050 -9.56066 -9.41220 -8.95579 -8.49293 -7.30988 -6.98802 -6.56972 -3.98411 1.10660 2.15387 2.26095 2.81170 2.91562 3.28219 3.37916 3.39017 3.48552 3.72908 4.06516 4.19681 4.31280 4.44815 4.49915 4.71272 4.79395 4.97537 5.09267 5.17085 5.40854 5.48454 5.52598 5.56443 5.71132 5.72366 5.77629 5.90006 6.04212 6.07022 6.07045 6.17845 6.26239 6.63566 6.86520 7.00600 7.03987 7.23459 7.47278 7.54762 7.71844 7.91014 8.14003 8.24365 8.40835 8.50152 8.59683 9.05126 9.10835 10.30187 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018428 B = 0.002332 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.034487 B =12005.447146 C =13091.729678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.308 6.308 3 C 0.045 3.955 4 C -0.231 4.231 5 C 0.113 3.887 6 N -0.760 5.760 7 C 0.137 3.863 8 C -0.127 4.127 9 C -0.088 4.088 10 C -0.148 4.148 11 H 0.139 0.861 12 C 0.085 3.915 13 N -0.237 5.237 14 N -0.578 5.578 15 C 0.502 3.498 16 O -0.495 6.495 17 C -0.170 4.170 18 C -0.162 4.162 19 C 0.054 3.946 20 C -0.516 4.516 21 H 0.074 0.926 22 C 0.036 3.964 23 N -0.815 5.815 24 Si 1.063 2.937 25 H -0.277 1.277 26 H -0.277 1.277 27 H -0.278 1.278 28 H 0.081 0.919 29 H 0.039 0.961 30 H 0.039 0.961 31 H 0.097 0.903 32 H 0.384 0.616 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.213 0.787 40 H 0.434 0.566 41 H 0.092 0.908 42 H 0.113 0.887 43 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.611 13.876 0.026 18.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.222 6.222 3 C 0.000 4.000 4 C -0.254 4.254 5 C 0.015 3.985 6 N -0.396 5.396 7 C 0.012 3.988 8 C -0.165 4.165 9 C -0.128 4.128 10 C -0.172 4.172 11 H 0.156 0.844 12 C -0.129 4.129 13 N -0.042 5.042 14 N -0.326 5.326 15 C 0.287 3.713 16 O -0.366 6.366 17 C -0.192 4.192 18 C -0.183 4.183 19 C 0.051 3.949 20 C -0.546 4.546 21 H 0.092 0.908 22 C -0.182 4.182 23 N -0.441 5.441 24 Si 0.887 3.113 25 H -0.202 1.202 26 H -0.203 1.203 27 H -0.204 1.204 28 H 0.100 0.900 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.115 0.885 32 H 0.216 0.784 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.230 0.770 40 H 0.279 0.721 41 H 0.110 0.890 42 H 0.131 0.869 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.472 14.273 -0.406 17.707 hybrid contribution -2.117 0.750 0.625 2.331 sum -12.589 15.023 0.219 19.602 Atomic orbital electron populations 1.22729 0.81803 1.01731 0.99822 1.86000 1.18154 1.28145 1.89942 1.18914 0.92074 0.82229 1.06758 1.20101 0.97153 0.91503 1.16609 1.16915 0.90289 0.84762 1.06519 1.43803 1.06370 1.02099 1.87336 1.20983 0.94543 0.82656 1.00633 1.21772 0.98806 0.92995 1.02924 1.21229 0.95903 0.91342 1.04289 1.21959 1.00015 0.95401 0.99824 0.84396 1.27224 0.97115 0.95184 0.93410 1.74865 1.06337 1.04240 1.18727 1.47646 1.47979 1.18076 1.18897 1.21363 0.80207 0.87889 0.81847 1.90834 1.36377 1.72248 1.37172 1.19919 0.91439 0.97482 1.10395 1.20512 0.98738 0.90997 1.08018 1.16997 0.87793 0.93796 0.96338 1.20151 0.99885 0.97082 1.37440 0.90762 1.26835 0.98944 0.99330 0.93121 1.70509 1.39647 1.16113 1.17828 0.83676 0.75444 0.75160 0.76972 1.20195 1.20282 1.20410 0.90025 0.94286 0.94210 0.88492 0.78379 0.93271 0.93315 0.91037 0.90965 0.89660 0.90811 0.77036 0.72083 0.89025 0.86943 0.89181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 9.81 101.05 0.99 1.59 16 2 O -0.31 -7.18 9.79 -18.70 -0.18 -7.36 16 3 C 0.05 1.12 6.71 -38.42 -0.26 0.87 16 4 C -0.23 -4.97 8.86 -39.29 -0.35 -5.32 16 5 C 0.11 2.32 6.66 -83.73 -0.56 1.76 16 6 N -0.76 -11.73 5.70 -58.53 -0.33 -12.06 16 7 C 0.14 1.72 4.89 -4.04 -0.02 1.70 16 8 C -0.13 -0.98 5.19 -26.73 -0.14 -1.12 16 9 C -0.09 -0.67 4.74 -26.73 -0.13 -0.80 16 10 C -0.15 -0.99 3.04 -92.08 -0.28 -1.27 16 11 H 0.14 0.71 8.14 -51.93 -0.42 0.29 16 12 C 0.08 0.45 11.17 -13.55 -0.15 0.30 16 13 N -0.24 -1.80 12.22 32.83 0.40 -1.40 16 14 N -0.58 -4.70 7.13 31.51 0.22 -4.48 16 15 C 0.50 4.92 8.26 -10.43 -0.09 4.83 16 16 O -0.49 -6.69 18.03 5.54 0.10 -6.59 16 17 C -0.17 -3.82 9.22 -39.75 -0.37 -4.19 16 18 C -0.16 -4.14 7.88 -39.32 -0.31 -4.45 16 19 C 0.05 1.47 5.31 -106.64 -0.57 0.90 16 20 C -0.52 -14.32 8.63 -37.95 -0.33 -14.65 16 21 H 0.07 2.08 7.72 -52.49 -0.41 1.68 16 22 C 0.04 0.96 4.93 -17.33 -0.09 0.88 16 23 N -0.82 -22.34 12.31 55.54 0.68 -21.65 16 24 Si 1.06 22.66 30.00 -169.99 -5.10 17.56 16 25 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 26 H -0.28 -5.71 7.11 56.52 0.40 -5.30 16 27 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 28 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.04 0.60 7.65 -51.92 -0.40 0.21 16 30 H 0.04 0.62 7.67 -51.93 -0.40 0.22 16 31 H 0.10 1.81 6.29 -52.49 -0.33 1.48 16 32 H 0.38 5.04 8.47 -40.82 -0.35 4.70 16 33 H 0.05 0.67 7.92 -51.93 -0.41 0.26 16 34 H 0.05 0.66 7.92 -51.93 -0.41 0.25 16 35 H 0.07 0.44 7.33 -51.93 -0.38 0.06 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.21 0.40 7.73 -52.49 -0.41 -0.01 16 40 H 0.43 2.77 8.96 -183.31 -1.64 1.13 16 41 H 0.09 1.87 6.67 -52.49 -0.35 1.52 16 42 H 0.11 2.98 6.47 -52.49 -0.34 2.64 16 43 H 0.29 8.26 6.69 -40.82 -0.27 7.99 16 LS Contribution 360.02 15.07 5.43 5.43 Total: -1.00 -33.44 360.02 -8.41 -41.85 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -7.00 Total: 7.68 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: -2.63 Total: -18.97 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 0.98 Total: -39.60 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.08 Total: -13.96 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.10 Total: 17.56 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.44 -8.41 -41.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164375781.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.827 kcal (2) G-P(sol) polarization free energy of solvation -33.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds