Wall clock time and date at job start Tue Mar 31 2020 11:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35668 * 117.00449 * 2 1 4 4 C 1.38045 * 120.21076 * 0.22931 * 3 2 1 5 5 C 1.39209 * 119.97685 * 180.28134 * 4 3 2 6 6 N 1.38930 * 119.79465 * 179.76595 * 5 4 3 7 7 C 1.46505 * 119.99742 * 179.97438 * 6 5 4 8 8 C 1.53005 * 109.46800 * 179.97438 * 7 6 5 9 9 C 1.52995 * 109.46875 * 179.97438 * 8 7 6 10 10 C 1.53004 * 109.46941 * 179.97438 * 9 8 7 11 11 H 1.09002 * 110.53505 * 54.30418 * 10 9 8 12 12 C 1.51438 * 110.61067 * 291.45081 * 10 9 8 13 13 N 1.27918 * 106.97732 * 241.53985 * 12 10 9 14 14 N 1.39150 * 113.21470 * 359.85477 * 13 12 10 15 15 C 1.34952 * 111.12031 * 0.09970 * 14 13 12 16 16 O 1.21302 * 127.49830 * 180.02562 * 15 14 13 17 17 C 1.39716 * 120.40944 * 359.74037 * 5 4 3 18 18 C 1.36226 * 120.42915 * 359.97438 * 17 5 4 19 19 C 1.40854 * 120.00986 * 0.02562 * 18 17 5 20 20 C 1.40971 * 120.20453 * 179.97438 * 19 18 17 21 21 H 1.07991 * 119.99855 * 154.58013 * 20 19 18 22 22 C 1.39843 * 119.99569 * 334.58003 * 20 19 18 23 23 N 1.30950 * 120.00234 * 334.53362 * 22 20 19 24 24 Si 1.86800 * 119.99744 * 154.53447 * 22 20 19 25 25 H 1.48501 * 109.47162 * 179.97438 * 24 22 20 26 26 H 1.48497 * 109.47080 * 299.99868 * 24 22 20 27 27 H 1.48504 * 109.47001 * 60.00264 * 24 22 20 28 28 H 1.09001 * 109.47531 * 180.02562 * 1 2 3 29 29 H 1.09011 * 109.47065 * 300.00717 * 1 2 3 30 30 H 1.09002 * 109.47139 * 60.00022 * 1 2 3 31 31 H 1.07997 * 120.00764 * 0.02562 * 4 3 2 32 32 H 0.96996 * 120.00106 * 359.97438 * 6 5 4 33 33 H 1.08995 * 109.46981 * 299.99705 * 7 6 5 34 34 H 1.09000 * 109.46969 * 60.00091 * 7 6 5 35 35 H 1.08999 * 109.46896 * 300.00067 * 8 7 6 36 36 H 1.09002 * 109.46965 * 59.99848 * 8 7 6 37 37 H 1.08999 * 109.47515 * 299.99813 * 9 8 7 38 38 H 1.09000 * 109.46829 * 60.00223 * 9 8 7 39 39 H 1.07997 * 126.41886 * 61.44744 * 12 10 9 40 40 H 0.96996 * 124.43776 * 180.11610 * 14 13 12 41 41 H 1.07997 * 119.78964 * 179.97438 * 17 5 4 42 42 H 1.07999 * 119.99509 * 180.02562 * 18 17 5 43 43 H 0.97006 * 120.00022 * 354.17150 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 1.2975 2.3693 0.0048 5 6 1.9346 3.6070 -0.0012 6 7 1.1786 4.7726 -0.0013 7 6 1.8445 6.0776 -0.0069 8 6 0.7913 7.1875 -0.0064 9 6 1.4867 8.5503 -0.0117 10 6 0.4336 9.6602 -0.0119 11 1 -0.2595 9.5297 0.8192 12 6 -0.3128 9.6867 -1.3293 13 7 -0.0924 10.8293 -1.8605 14 7 0.7258 11.6458 -1.0857 15 6 1.0949 11.0236 0.0535 16 8 1.8014 11.4600 0.9377 17 6 3.3296 3.6843 -0.0065 18 6 4.0835 2.5497 -0.0054 19 6 3.4575 1.2879 0.0005 20 6 4.2336 0.1111 0.0011 21 1 3.8272 -0.8035 0.4067 22 6 5.5298 0.1283 -0.5236 23 7 5.8573 1.0139 -1.4309 24 14 6.7940 -1.1122 0.0699 25 1 8.0803 -0.8848 -0.6366 26 1 6.9968 -0.9514 1.5322 27 1 6.3100 -2.4870 -0.2146 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2188 2.3170 0.0089 32 1 0.2099 4.7224 0.0024 33 1 2.4705 6.1699 0.8805 34 1 2.4640 6.1654 -0.8994 35 1 0.1656 7.0950 -0.8941 36 1 0.1714 7.0997 0.8858 37 1 2.1122 8.6425 0.8762 38 1 2.1069 8.6382 -0.9038 39 1 -0.9150 8.8904 -1.7412 40 1 0.9952 12.5444 -1.3321 41 1 3.8135 4.6498 -0.0115 42 1 5.1614 2.6176 -0.0092 43 1 5.1806 1.6024 -1.8007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164375781.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:06 Heat of formation + Delta-G solvation = -29.362786 kcal Electronic energy + Delta-G solvation = -25088.653291 eV Core-core repulsion = 21326.919962 eV Total energy + Delta-G solvation = -3761.733329 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.32367 -40.62556 -38.70173 -38.56637 -37.25131 -35.82638 -34.16370 -32.18865 -31.07446 -30.74247 -29.36146 -27.93909 -26.38749 -25.24006 -23.48476 -22.74462 -22.27776 -21.72157 -21.55013 -19.82118 -18.89741 -18.38757 -17.41682 -17.20476 -16.53506 -16.41698 -16.28496 -16.05315 -15.93111 -15.82460 -15.46781 -15.40189 -14.99373 -14.63436 -14.33060 -14.21646 -13.79057 -13.52808 -13.20560 -13.18953 -12.98896 -12.78625 -12.62613 -12.27824 -12.19299 -12.09258 -11.93223 -11.78415 -11.66342 -11.51989 -11.26797 -10.86093 -10.77675 -10.26363 -10.19154 -9.15866 -8.89931 -8.29396 -5.96371 0.57055 0.95544 1.08982 1.53378 1.53497 1.68878 1.69585 1.82821 2.43998 2.68656 2.80986 2.86980 2.99497 3.24598 3.63611 3.68827 3.92535 4.16763 4.27196 4.29944 4.42153 4.44683 4.48470 4.49359 4.50452 4.71125 4.73301 4.81131 4.88259 4.93677 5.06925 5.12562 5.19677 5.28301 5.35014 5.45096 5.60752 5.64464 5.84313 5.97547 6.24106 6.28879 6.47993 6.65562 6.77934 6.83893 7.11809 7.16506 7.33722 8.27760 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018428 B = 0.002332 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.034487 B =12005.447146 C =13091.729678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.340 6.340 3 C 0.044 3.956 4 C -0.239 4.239 5 C 0.148 3.852 6 N -0.744 5.744 7 C 0.129 3.871 8 C -0.111 4.111 9 C -0.082 4.082 10 C -0.141 4.141 11 H 0.162 0.838 12 C 0.111 3.889 13 N -0.266 5.266 14 N -0.577 5.577 15 C 0.490 3.510 16 O -0.545 6.545 17 C -0.192 4.192 18 C -0.166 4.166 19 C 0.004 3.996 20 C -0.555 4.555 21 H 0.056 0.944 22 C -0.003 4.003 23 N -0.842 5.842 24 Si 1.112 2.888 25 H -0.272 1.272 26 H -0.267 1.267 27 H -0.264 1.264 28 H 0.109 0.891 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.134 0.866 32 H 0.402 0.598 33 H 0.038 0.962 34 H 0.040 0.960 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.255 0.745 40 H 0.437 0.563 41 H 0.109 0.891 42 H 0.089 0.911 43 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.953 14.492 -0.016 21.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.254 6.254 3 C -0.002 4.002 4 C -0.262 4.262 5 C 0.047 3.953 6 N -0.379 5.379 7 C 0.004 3.996 8 C -0.149 4.149 9 C -0.121 4.121 10 C -0.165 4.165 11 H 0.180 0.820 12 C -0.102 4.102 13 N -0.071 5.071 14 N -0.324 5.324 15 C 0.276 3.724 16 O -0.421 6.421 17 C -0.215 4.215 18 C -0.186 4.186 19 C 0.001 3.999 20 C -0.586 4.586 21 H 0.074 0.926 22 C -0.214 4.214 23 N -0.469 5.469 24 Si 0.931 3.069 25 H -0.197 1.197 26 H -0.192 1.192 27 H -0.189 1.189 28 H 0.127 0.873 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.152 0.848 32 H 0.238 0.762 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.119 0.881 36 H 0.108 0.892 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.271 0.729 40 H 0.283 0.717 41 H 0.127 0.873 42 H 0.108 0.892 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.899 14.933 -0.476 20.406 hybrid contribution -1.398 0.731 0.644 1.704 sum -15.297 15.664 0.167 21.895 Atomic orbital electron populations 1.23111 0.78365 1.04227 1.01191 1.85953 1.21784 1.27926 1.89773 1.19141 0.91813 0.83870 1.05342 1.20402 0.98896 0.90576 1.16339 1.17092 0.89973 0.86531 1.01738 1.43877 1.07202 1.01502 1.85301 1.21194 0.96028 0.82647 0.99740 1.21668 0.97496 0.90458 1.05258 1.21093 0.95951 0.91722 1.03343 1.21962 0.99924 0.92959 1.01659 0.82048 1.27959 0.95427 0.95033 0.91755 1.74946 1.07585 1.05361 1.19166 1.47749 1.47638 1.18476 1.18523 1.21903 0.79697 0.89223 0.81540 1.90801 1.38754 1.73599 1.38944 1.20077 0.92611 0.97208 1.11573 1.20441 0.98019 0.91934 1.08252 1.17323 0.89586 0.94088 0.98926 1.20177 1.01469 0.96998 1.39941 0.92617 1.28141 1.00646 1.00397 0.92260 1.70627 1.38873 1.17803 1.19595 0.83064 0.73281 0.73598 0.76955 1.19718 1.19221 1.18886 0.87274 0.92600 0.92784 0.84794 0.76224 0.94392 0.94141 0.88138 0.89163 0.91197 0.91527 0.72909 0.71737 0.87342 0.89239 0.91075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 9.81 113.37 1.11 1.91 16 2 O -0.34 -15.72 9.79 -89.84 -0.88 -16.60 16 3 C 0.04 2.17 6.71 23.02 0.15 2.33 16 4 C -0.24 -9.70 8.86 22.46 0.20 -9.51 16 5 C 0.15 5.71 6.66 38.61 0.26 5.97 16 6 N -0.74 -19.76 5.70 -339.10 -1.93 -21.69 16 7 C 0.13 2.77 4.89 86.38 0.42 3.19 16 8 C -0.11 -1.16 5.19 30.59 0.16 -1.01 16 9 C -0.08 -0.99 4.74 30.59 0.15 -0.85 16 10 C -0.14 -1.42 3.04 -11.74 -0.04 -1.46 16 11 H 0.16 0.95 8.14 -2.39 -0.02 0.94 16 12 C 0.11 0.70 11.17 88.91 0.99 1.69 16 13 N -0.27 -3.33 12.22 -49.91 -0.61 -3.94 16 14 N -0.58 -8.76 7.13 -172.50 -1.23 -9.99 16 15 C 0.49 9.12 8.26 87.94 0.73 9.84 16 16 O -0.55 -14.98 18.03 -3.10 -0.06 -15.03 16 17 C -0.19 -8.60 9.22 22.16 0.20 -8.39 16 18 C -0.17 -8.82 7.88 22.44 0.18 -8.65 16 19 C 0.00 0.24 5.31 -21.17 -0.11 0.12 16 20 C -0.56 -32.54 8.63 23.33 0.20 -32.34 16 21 H 0.06 3.32 7.72 -2.91 -0.02 3.30 16 22 C 0.00 -0.14 4.93 85.21 0.42 0.28 16 23 N -0.84 -48.71 12.31 21.81 0.27 -48.45 16 24 Si 1.11 47.44 30.00 68.60 2.06 49.49 16 25 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 26 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 27 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 28 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 29 H 0.06 1.53 7.65 -2.38 -0.02 1.51 16 30 H 0.05 1.51 7.67 -2.39 -0.02 1.49 16 31 H 0.13 4.37 6.29 -2.91 -0.02 4.35 16 32 H 0.40 8.19 8.47 -92.71 -0.79 7.40 16 33 H 0.04 0.94 7.92 -2.39 -0.02 0.92 16 34 H 0.04 0.98 7.92 -2.39 -0.02 0.96 16 35 H 0.10 0.55 7.33 -2.39 -0.02 0.53 16 36 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16 39 H 0.26 -0.73 7.73 -2.91 -0.02 -0.75 16 40 H 0.44 5.49 8.96 -213.93 -1.92 3.57 16 41 H 0.11 4.38 6.67 -2.91 -0.02 4.36 16 42 H 0.09 5.06 6.47 -2.91 -0.02 5.04 16 43 H 0.28 16.59 6.69 -92.70 -0.62 15.97 16 Total: -1.00 -79.67 360.02 1.15 -78.52 By element: Atomic # 1 Polarization: 26.04 SS G_CDS: -1.49 Total: 24.54 kcal Atomic # 6 Polarization: -41.88 SS G_CDS: 5.02 Total: -36.86 kcal Atomic # 7 Polarization: -80.56 SS G_CDS: -3.50 Total: -84.07 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -0.94 Total: -31.63 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.06 Total: 49.49 kcal Total: -79.67 1.15 -78.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164375781.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.154 kcal (2) G-P(sol) polarization free energy of solvation -79.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds