Wall clock time and date at job start Tue Mar 31 2020 11:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35961 * 117.00124 * 2 1 4 4 C 1.39411 * 119.81982 * 0.02562 * 3 2 1 5 5 C 1.38099 * 120.56881 * 179.71991 * 4 3 2 6 6 C 1.38716 * 120.20097 * 0.52041 * 5 4 3 7 7 N 1.38859 * 120.18408 * 179.76249 * 6 5 4 8 8 C 1.46499 * 119.99553 * 359.72040 * 7 6 5 9 9 C 1.53007 * 109.46863 * 179.97438 * 8 7 6 10 10 C 1.52993 * 109.46807 * 180.02562 * 9 8 7 11 11 C 1.53005 * 109.46990 * 180.02562 * 10 9 8 12 12 H 1.08991 * 110.54379 * 54.29596 * 11 10 9 13 13 C 1.51445 * 110.60461 * 291.44570 * 11 10 9 14 14 N 1.27562 * 107.16881 * 241.48222 * 13 11 10 15 15 N 1.39144 * 113.16693 * 0.02562 * 14 13 11 16 16 C 1.35313 * 111.16074 * 359.90158 * 15 14 13 17 17 O 1.21305 * 127.68187 * 180.08819 * 16 15 14 18 18 C 1.41540 * 119.63546 * 359.48784 * 6 5 4 19 19 C 1.41031 * 120.27651 * 180.27105 * 18 6 5 20 20 H 1.08001 * 120.00464 * 333.63688 * 19 18 6 21 21 C 1.39908 * 119.99907 * 153.62655 * 19 18 6 22 22 N 1.30888 * 119.99739 * 344.00251 * 21 19 18 23 23 Si 1.86793 * 120.00023 * 164.00130 * 21 19 18 24 24 H 1.48505 * 109.47242 * 59.99916 * 23 21 19 25 25 H 1.48495 * 109.47292 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47275 * 300.00399 * 23 21 19 27 27 C 1.37840 * 119.82113 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47438 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47372 * 300.00325 * 1 2 3 30 30 H 1.09000 * 109.46970 * 60.00279 * 1 2 3 31 31 H 1.08005 * 119.71847 * 359.97438 * 4 3 2 32 32 H 1.08005 * 119.89902 * 180.25499 * 5 4 3 33 33 H 0.96997 * 119.99951 * 179.72414 * 7 6 5 34 34 H 1.08996 * 109.47160 * 60.00300 * 8 7 6 35 35 H 1.09002 * 109.47525 * 300.00199 * 8 7 6 36 36 H 1.09004 * 109.46442 * 60.00389 * 9 8 7 37 37 H 1.08993 * 109.47117 * 300.00094 * 9 8 7 38 38 H 1.08996 * 109.47289 * 60.00556 * 10 9 8 39 39 H 1.09000 * 109.47595 * 299.99895 * 10 9 8 40 40 H 1.08005 * 126.41278 * 61.45409 * 13 11 10 41 41 H 0.97003 * 124.44629 * 179.97438 * 15 14 13 42 42 H 0.97004 * 119.99901 * 179.97438 * 22 21 19 43 43 H 1.08003 * 120.10756 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2833 2.3782 0.0005 5 6 1.8942 3.6168 0.0064 6 6 3.2780 3.7123 0.0009 7 7 3.8918 4.9579 0.0017 8 6 3.0775 6.1757 0.0023 9 6 3.9932 7.4015 0.0039 10 6 3.1427 8.6733 0.0051 11 6 4.0584 9.8991 0.0060 12 1 4.7644 9.8498 -0.8229 13 6 4.7928 10.0148 1.3255 14 7 4.4428 11.1210 1.8555 15 7 3.5345 11.8360 1.0809 16 6 3.2414 11.1751 -0.0629 17 8 2.4904 11.5241 -0.9493 18 6 4.0610 2.5332 0.0002 19 6 5.4690 2.6147 0.0004 20 1 5.9598 3.4827 -0.4143 21 6 6.2299 1.5710 0.5381 22 7 5.6639 0.6793 1.3112 23 14 8.0537 1.4501 0.1527 24 1 8.7422 2.6775 0.6270 25 1 8.6272 0.2648 0.8392 26 1 8.2417 1.3126 -1.3139 27 6 3.4230 1.2792 -0.0005 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2052 2.3130 0.0005 32 1 1.2926 4.5137 0.0109 33 1 4.8597 5.0216 0.0019 34 1 2.4483 6.1916 0.8922 35 1 2.4485 6.1927 -0.8878 36 1 4.6227 7.3858 -0.8859 37 1 4.6217 7.3843 0.8941 38 1 2.5135 8.6888 0.8950 39 1 2.5138 8.6908 -0.8850 40 1 5.4831 9.2951 1.7402 41 1 3.1608 12.6964 1.3277 42 1 6.1914 -0.0445 1.6837 43 1 4.0101 0.3727 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164384026.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:13 Heat of formation + Delta-G solvation = -3.483919 kcal Electronic energy + Delta-G solvation = -25288.705555 eV Core-core repulsion = 21528.094418 eV Total energy + Delta-G solvation = -3760.611138 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.60208 -38.68061 -37.78059 -37.19029 -35.65586 -33.75009 -32.99174 -31.35465 -29.83249 -29.39023 -27.71419 -25.85966 -25.11386 -24.24062 -22.59702 -21.55434 -21.07301 -20.39145 -19.88777 -18.14698 -17.59579 -16.47524 -16.21926 -15.79340 -15.72825 -15.14034 -15.10708 -14.98345 -14.70341 -14.64667 -14.34387 -14.01076 -13.32936 -13.17607 -12.80199 -12.66390 -12.45153 -12.19996 -11.95198 -11.76118 -11.48798 -11.31998 -11.24980 -11.10610 -11.04784 -10.97889 -10.80437 -10.49889 -10.13486 -10.09876 -9.94539 -9.46678 -9.35006 -9.09541 -8.34948 -7.38399 -6.70761 -5.97176 -4.18584 1.22531 2.24394 2.35087 2.81818 3.09766 3.10504 3.19291 3.26231 3.49788 3.85224 3.96708 4.32308 4.45074 4.49476 4.66734 4.72299 4.94445 5.12856 5.30489 5.35744 5.54588 5.64324 5.66617 5.71743 5.76929 5.84244 5.87616 5.98910 6.20510 6.24430 6.25726 6.28272 6.40753 6.89725 7.00953 7.14693 7.18920 7.47419 7.55693 7.55988 7.65931 7.92774 8.07670 8.26924 8.61682 8.81702 8.87855 8.99299 9.14452 10.28680 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011782 B = 0.002980 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.022222 B = 9392.873077 C =11394.199673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.331 6.331 3 C 0.092 3.908 4 C -0.277 4.277 5 C -0.149 4.149 6 C 0.094 3.906 7 N -0.750 5.750 8 C 0.137 3.863 9 C -0.129 4.129 10 C -0.087 4.087 11 C -0.149 4.149 12 H 0.140 0.860 13 C 0.088 3.912 14 N -0.238 5.238 15 N -0.581 5.581 16 C 0.502 3.498 17 O -0.496 6.496 18 C 0.099 3.901 19 C -0.463 4.463 20 H 0.074 0.926 21 C 0.077 3.923 22 N -0.793 5.793 23 Si 0.905 3.095 24 H -0.268 1.268 25 H -0.280 1.280 26 H -0.265 1.265 27 C -0.171 4.171 28 H 0.080 0.920 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.395 0.605 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.214 0.786 41 H 0.433 0.567 42 H 0.279 0.721 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.971 13.163 0.325 13.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.246 6.246 3 C 0.048 3.952 4 C -0.297 4.297 5 C -0.173 4.173 6 C -0.005 4.005 7 N -0.386 5.386 8 C 0.012 3.988 9 C -0.167 4.167 10 C -0.126 4.126 11 C -0.173 4.173 12 H 0.157 0.843 13 C -0.126 4.126 14 N -0.043 5.043 15 N -0.329 5.329 16 C 0.288 3.712 17 O -0.368 6.368 18 C 0.094 3.906 19 C -0.494 4.494 20 H 0.092 0.908 21 C -0.141 4.141 22 N -0.418 5.418 23 Si 0.730 3.270 24 H -0.192 1.192 25 H -0.205 1.205 26 H -0.190 1.190 27 C -0.192 4.192 28 H 0.098 0.902 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.230 0.770 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.231 0.769 41 H 0.278 0.722 42 H 0.090 0.910 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.344 13.722 0.720 13.807 hybrid contribution 0.551 0.100 -0.522 0.766 sum -0.793 13.822 0.198 13.846 Atomic orbital electron populations 1.22697 0.81253 1.01541 1.00257 1.85996 1.19041 1.29183 1.90398 1.18816 0.92422 0.82372 1.01597 1.20188 0.96935 0.92197 1.20421 1.19768 0.92285 0.95669 1.09549 1.17830 0.91013 0.85184 1.06472 1.43835 1.07285 1.01379 1.86122 1.20944 0.93630 0.84262 1.00001 1.21782 0.98659 0.92993 1.03218 1.21227 0.96918 0.90444 1.04022 1.21974 0.99465 0.95986 0.99850 0.84311 1.27175 0.97618 0.94481 0.93371 1.74752 1.03699 1.07052 1.18794 1.47740 1.43121 1.23150 1.18851 1.21461 0.81613 0.86364 0.81767 1.90823 1.36262 1.72699 1.36971 1.16944 0.92755 0.88523 0.92386 1.19080 0.90782 1.03776 1.35745 0.90777 1.25795 1.00629 0.94785 0.92853 1.69851 1.38232 1.11625 1.22131 0.86437 0.82440 0.78436 0.79734 1.19246 1.20484 1.19005 1.20315 0.89238 0.98624 1.11050 0.90194 0.93943 0.93981 0.88985 0.89193 0.77022 0.93810 0.93739 0.90836 0.90870 0.90971 0.89824 0.76947 0.72221 0.90960 0.85668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 9.81 101.05 0.99 1.64 16 2 O -0.33 -7.52 10.49 -19.62 -0.21 -7.72 16 3 C 0.09 2.27 6.67 -39.29 -0.26 2.01 16 4 C -0.28 -6.29 9.03 -39.20 -0.35 -6.64 16 5 C -0.15 -3.31 9.28 -39.46 -0.37 -3.67 16 6 C 0.09 2.15 6.68 -83.24 -0.56 1.59 16 7 N -0.75 -13.89 5.63 -58.17 -0.33 -14.22 16 8 C 0.14 1.94 4.90 -4.04 -0.02 1.92 16 9 C -0.13 -1.24 5.19 -26.73 -0.14 -1.37 16 10 C -0.09 -0.75 4.74 -26.73 -0.13 -0.88 16 11 C -0.15 -1.16 3.04 -92.08 -0.28 -1.44 16 12 H 0.14 0.89 8.14 -51.93 -0.42 0.47 16 13 C 0.09 0.58 11.15 -13.69 -0.15 0.43 16 14 N -0.24 -2.05 12.21 32.60 0.40 -1.65 16 15 N -0.58 -5.17 7.14 31.58 0.23 -4.94 16 16 C 0.50 5.30 8.28 -10.26 -0.09 5.22 16 17 O -0.50 -6.99 18.03 5.54 0.10 -6.89 16 18 C 0.10 2.53 5.57 -106.65 -0.59 1.94 16 19 C -0.46 -11.55 8.48 -37.90 -0.32 -11.87 16 20 H 0.07 1.71 6.71 -52.49 -0.35 1.36 16 21 C 0.08 1.87 5.16 -17.33 -0.09 1.78 16 22 N -0.79 -20.45 10.97 55.55 0.61 -19.84 16 23 Si 0.90 18.11 29.59 -169.99 -5.03 13.09 16 24 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 25 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 26 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 27 C -0.17 -4.56 8.59 -38.80 -0.33 -4.89 16 28 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.04 0.68 7.65 -51.92 -0.40 0.28 16 30 H 0.04 0.66 7.65 -51.93 -0.40 0.26 16 31 H 0.09 1.86 6.26 -52.48 -0.33 1.53 16 32 H 0.09 1.77 6.71 -52.48 -0.35 1.42 16 33 H 0.39 7.09 6.70 -40.82 -0.27 6.82 16 34 H 0.04 0.64 7.93 -51.93 -0.41 0.23 16 35 H 0.04 0.65 7.95 -51.93 -0.41 0.23 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.62 7.33 -51.93 -0.38 0.24 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.21 0.76 7.73 -52.48 -0.41 0.35 16 41 H 0.43 3.04 8.96 -183.31 -1.64 1.40 16 42 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 43 H 0.13 3.53 6.23 -52.48 -0.33 3.20 16 LS Contribution 358.77 15.07 5.41 5.41 Total: -1.00 -31.83 358.77 -8.44 -40.27 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -6.93 Total: 10.75 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: -2.69 Total: -14.24 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: 0.91 Total: -40.65 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -0.11 Total: -14.61 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.09 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.83 -8.44 -40.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164384026.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.784 kcal (2) G-P(sol) polarization free energy of solvation -31.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds