Wall clock time and date at job start Tue Mar 31 2020 11:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35961 * 117.00124 * 2 1 4 4 C 1.39411 * 119.81982 * 0.02562 * 3 2 1 5 5 C 1.38099 * 120.56881 * 179.71991 * 4 3 2 6 6 C 1.38716 * 120.20097 * 0.52041 * 5 4 3 7 7 N 1.38859 * 120.18408 * 179.76249 * 6 5 4 8 8 C 1.46499 * 119.99553 * 359.72040 * 7 6 5 9 9 C 1.53007 * 109.46863 * 179.97438 * 8 7 6 10 10 C 1.52993 * 109.46807 * 180.02562 * 9 8 7 11 11 C 1.53005 * 109.46990 * 180.02562 * 10 9 8 12 12 H 1.08991 * 110.54379 * 54.29596 * 11 10 9 13 13 C 1.51445 * 110.60461 * 291.44570 * 11 10 9 14 14 N 1.27562 * 107.16881 * 241.48222 * 13 11 10 15 15 N 1.39144 * 113.16693 * 0.02562 * 14 13 11 16 16 C 1.35313 * 111.16074 * 359.90158 * 15 14 13 17 17 O 1.21305 * 127.68187 * 180.08819 * 16 15 14 18 18 C 1.41540 * 119.63546 * 359.48784 * 6 5 4 19 19 C 1.41031 * 120.27651 * 180.27105 * 18 6 5 20 20 H 1.08001 * 120.00464 * 333.63688 * 19 18 6 21 21 C 1.39908 * 119.99907 * 153.62655 * 19 18 6 22 22 N 1.30888 * 119.99739 * 344.00251 * 21 19 18 23 23 Si 1.86793 * 120.00023 * 164.00130 * 21 19 18 24 24 H 1.48505 * 109.47242 * 59.99916 * 23 21 19 25 25 H 1.48495 * 109.47292 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47275 * 300.00399 * 23 21 19 27 27 C 1.37840 * 119.82113 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47438 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47372 * 300.00325 * 1 2 3 30 30 H 1.09000 * 109.46970 * 60.00279 * 1 2 3 31 31 H 1.08005 * 119.71847 * 359.97438 * 4 3 2 32 32 H 1.08005 * 119.89902 * 180.25499 * 5 4 3 33 33 H 0.96997 * 119.99951 * 179.72414 * 7 6 5 34 34 H 1.08996 * 109.47160 * 60.00300 * 8 7 6 35 35 H 1.09002 * 109.47525 * 300.00199 * 8 7 6 36 36 H 1.09004 * 109.46442 * 60.00389 * 9 8 7 37 37 H 1.08993 * 109.47117 * 300.00094 * 9 8 7 38 38 H 1.08996 * 109.47289 * 60.00556 * 10 9 8 39 39 H 1.09000 * 109.47595 * 299.99895 * 10 9 8 40 40 H 1.08005 * 126.41278 * 61.45409 * 13 11 10 41 41 H 0.97003 * 124.44629 * 179.97438 * 15 14 13 42 42 H 0.97004 * 119.99901 * 179.97438 * 22 21 19 43 43 H 1.08003 * 120.10756 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2833 2.3782 0.0005 5 6 1.8942 3.6168 0.0064 6 6 3.2780 3.7123 0.0009 7 7 3.8918 4.9579 0.0017 8 6 3.0775 6.1757 0.0023 9 6 3.9932 7.4015 0.0039 10 6 3.1427 8.6733 0.0051 11 6 4.0584 9.8991 0.0060 12 1 4.7644 9.8498 -0.8229 13 6 4.7928 10.0148 1.3255 14 7 4.4428 11.1210 1.8555 15 7 3.5345 11.8360 1.0809 16 6 3.2414 11.1751 -0.0629 17 8 2.4904 11.5241 -0.9493 18 6 4.0610 2.5332 0.0002 19 6 5.4690 2.6147 0.0004 20 1 5.9598 3.4827 -0.4143 21 6 6.2299 1.5710 0.5381 22 7 5.6639 0.6793 1.3112 23 14 8.0537 1.4501 0.1527 24 1 8.7422 2.6775 0.6270 25 1 8.6272 0.2648 0.8392 26 1 8.2417 1.3126 -1.3139 27 6 3.4230 1.2792 -0.0005 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2052 2.3130 0.0005 32 1 1.2926 4.5137 0.0109 33 1 4.8597 5.0216 0.0019 34 1 2.4483 6.1916 0.8922 35 1 2.4485 6.1927 -0.8878 36 1 4.6227 7.3858 -0.8859 37 1 4.6217 7.3843 0.8941 38 1 2.5135 8.6888 0.8950 39 1 2.5138 8.6908 -0.8850 40 1 5.4831 9.2951 1.7402 41 1 3.1608 12.6964 1.3277 42 1 6.1914 -0.0445 1.6837 43 1 4.0101 0.3727 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164384026.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:12 Heat of formation + Delta-G solvation = -25.619926 kcal Electronic energy + Delta-G solvation = -25289.665445 eV Core-core repulsion = 21528.094418 eV Total energy + Delta-G solvation = -3761.571027 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.29482 -40.39714 -38.75771 -38.58188 -36.84188 -35.32059 -34.38874 -32.14507 -31.51735 -30.63134 -29.10423 -27.27548 -26.84532 -25.43278 -23.51252 -22.65307 -21.90726 -21.65605 -21.49085 -19.36500 -18.87519 -17.95482 -17.43309 -17.17491 -16.81054 -16.47120 -16.28070 -16.23161 -15.92571 -15.84153 -15.44736 -14.98492 -14.84508 -14.37681 -14.16003 -13.79575 -13.74928 -13.35196 -13.21062 -13.12229 -13.03176 -12.75657 -12.66268 -12.54262 -12.24249 -12.14263 -12.01478 -11.80074 -11.60599 -11.46721 -11.10744 -10.88632 -10.83024 -10.17014 -9.94025 -9.25976 -8.52011 -7.69246 -6.04126 0.59275 1.05177 1.38276 1.46015 1.54826 1.56522 1.61210 1.71016 2.29162 2.79093 2.85662 2.95149 3.15757 3.27648 3.74304 3.84247 3.96348 4.21615 4.36322 4.43301 4.47321 4.51263 4.55341 4.57674 4.62286 4.77240 4.78191 4.85693 4.97420 5.08518 5.13967 5.21271 5.34480 5.37006 5.38162 5.62844 5.65490 5.81476 5.89306 6.07161 6.26476 6.45001 6.50134 6.85751 6.86930 7.04167 7.09261 7.33019 7.46757 8.49800 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011782 B = 0.002980 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.022222 B = 9392.873077 C =11394.199673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.356 6.356 3 C 0.076 3.924 4 C -0.274 4.274 5 C -0.159 4.159 6 C 0.094 3.906 7 N -0.745 5.745 8 C 0.132 3.868 9 C -0.116 4.116 10 C -0.077 4.077 11 C -0.144 4.144 12 H 0.160 0.840 13 C 0.109 3.891 14 N -0.263 5.263 15 N -0.578 5.578 16 C 0.494 3.506 17 O -0.542 6.542 18 C 0.067 3.933 19 C -0.485 4.485 20 H 0.088 0.912 21 C 0.032 3.968 22 N -0.833 5.833 23 Si 0.978 3.022 24 H -0.250 1.250 25 H -0.280 1.280 26 H -0.265 1.265 27 C -0.206 4.206 28 H 0.112 0.888 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.397 0.603 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.249 0.751 41 H 0.438 0.562 42 H 0.281 0.719 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.178 14.474 0.490 14.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.272 6.272 3 C 0.031 3.969 4 C -0.295 4.295 5 C -0.183 4.183 6 C -0.006 4.006 7 N -0.380 5.380 8 C 0.008 3.992 9 C -0.153 4.153 10 C -0.116 4.116 11 C -0.167 4.167 12 H 0.177 0.823 13 C -0.104 4.104 14 N -0.068 5.068 15 N -0.325 5.325 16 C 0.280 3.720 17 O -0.417 6.417 18 C 0.063 3.937 19 C -0.515 4.515 20 H 0.106 0.894 21 C -0.181 4.181 22 N -0.460 5.460 23 Si 0.800 3.200 24 H -0.174 1.174 25 H -0.205 1.205 26 H -0.190 1.190 27 C -0.228 4.228 28 H 0.130 0.870 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.232 0.768 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.102 0.898 37 H 0.111 0.889 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.265 0.735 41 H 0.283 0.717 42 H 0.092 0.908 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.551 15.080 0.914 15.118 hybrid contribution 0.175 -0.317 -0.554 0.662 sum -0.376 14.763 0.359 14.772 Atomic orbital electron populations 1.23051 0.78224 1.04113 1.01111 1.85947 1.22235 1.28651 1.90361 1.18927 0.92218 0.83738 1.01971 1.20508 0.98223 0.91728 1.18999 1.20096 0.92389 0.96547 1.09285 1.17989 0.91437 0.86212 1.04996 1.43964 1.07812 1.01229 1.85021 1.21168 0.94197 0.84190 0.99689 1.21681 0.98020 0.90890 1.04738 1.21067 0.96743 0.90274 1.03535 1.21975 0.99289 0.94044 1.01418 0.82310 1.27800 0.96560 0.94030 0.91996 1.74825 1.04596 1.08169 1.19178 1.47817 1.42871 1.23401 1.18423 1.21884 0.81236 0.87336 0.81499 1.90794 1.38390 1.73967 1.38590 1.17303 0.93764 0.89292 0.93376 1.19412 0.90984 1.04845 1.36236 0.89413 1.26698 1.05281 0.94047 0.92119 1.69968 1.40118 1.12465 1.23473 0.85312 0.76623 0.78906 0.79202 1.17367 1.20507 1.18987 1.20286 0.90367 0.98264 1.13854 0.86953 0.93182 0.92815 0.86375 0.86526 0.76773 0.93988 0.94013 0.89769 0.88948 0.91216 0.90792 0.73480 0.71682 0.90829 0.88613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 9.81 113.37 1.11 2.07 16 2 O -0.36 -16.39 10.49 -93.11 -0.98 -17.37 16 3 C 0.08 3.84 6.67 22.46 0.15 3.99 16 4 C -0.27 -12.26 9.03 22.52 0.20 -12.06 16 5 C -0.16 -6.88 9.28 22.35 0.21 -6.68 16 6 C 0.09 4.29 6.68 38.96 0.26 4.55 16 7 N -0.75 -26.36 5.63 -337.97 -1.90 -28.26 16 8 C 0.13 3.41 4.90 86.38 0.42 3.83 16 9 C -0.12 -1.82 5.19 30.59 0.16 -1.66 16 10 C -0.08 -1.13 4.74 30.59 0.15 -0.98 16 11 C -0.14 -1.85 3.04 -11.74 -0.04 -1.88 16 12 H 0.16 1.48 8.14 -2.39 -0.02 1.46 16 13 C 0.11 1.06 11.15 88.97 0.99 2.05 16 14 N -0.26 -3.89 12.21 -50.09 -0.61 -4.51 16 15 N -0.58 -9.58 7.14 -172.09 -1.23 -10.81 16 16 C 0.49 9.88 8.28 87.88 0.73 10.61 16 17 O -0.54 -15.28 18.03 -3.11 -0.06 -15.33 16 18 C 0.07 3.53 5.57 -21.18 -0.12 3.42 16 19 C -0.48 -24.41 8.48 23.36 0.20 -24.21 16 20 H 0.09 4.00 6.71 -2.91 -0.02 3.98 16 21 C 0.03 1.59 5.16 85.24 0.44 2.03 16 22 N -0.83 -44.59 10.97 21.82 0.24 -44.35 16 23 Si 0.98 37.11 29.59 68.60 2.03 39.14 16 24 H -0.25 -8.70 7.11 99.48 0.71 -7.99 16 25 H -0.28 -10.50 7.11 99.48 0.71 -9.80 16 26 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 27 C -0.21 -11.47 8.59 22.78 0.20 -11.28 16 28 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 29 H 0.05 1.52 7.65 -2.38 -0.02 1.50 16 30 H 0.05 1.59 7.65 -2.39 -0.02 1.57 16 31 H 0.12 4.53 6.26 -2.91 -0.02 4.51 16 32 H 0.12 4.32 6.71 -2.91 -0.02 4.30 16 33 H 0.40 13.51 6.70 -92.71 -0.62 12.89 16 34 H 0.04 1.12 7.93 -2.39 -0.02 1.10 16 35 H 0.04 1.12 7.95 -2.39 -0.02 1.10 16 36 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.09 1.15 7.33 -2.39 -0.02 1.13 16 38 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.25 0.49 7.73 -2.91 -0.02 0.47 16 41 H 0.44 5.91 8.96 -213.93 -1.92 3.99 16 42 H 0.28 13.90 8.30 -92.71 -0.77 13.13 16 43 H 0.10 5.76 6.23 -2.91 -0.02 5.75 16 Total: -1.00 -72.63 358.77 1.08 -71.55 By element: Atomic # 1 Polarization: 37.62 SS G_CDS: -1.47 Total: 36.15 kcal Atomic # 6 Polarization: -31.27 SS G_CDS: 5.06 Total: -26.21 kcal Atomic # 7 Polarization: -84.42 SS G_CDS: -3.51 Total: -87.93 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: -1.03 Total: -32.70 kcal Atomic # 14 Polarization: 37.11 SS G_CDS: 2.03 Total: 39.14 kcal Total: -72.63 1.08 -71.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164384026.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.933 kcal (2) G-P(sol) polarization free energy of solvation -72.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds