Wall clock time and date at job start Tue Mar 31 2020 11:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35957 * 116.99717 * 2 1 4 4 C 1.39421 * 119.82173 * 0.02562 * 3 2 1 5 5 C 1.38099 * 120.56856 * 179.97438 * 4 3 2 6 6 C 1.38716 * 120.20019 * 359.97438 * 5 4 3 7 7 N 1.38858 * 120.17877 * 180.27677 * 6 5 4 8 8 C 1.46504 * 119.99809 * 359.72026 * 7 6 5 9 9 C 1.53005 * 109.46940 * 180.02562 * 8 7 6 10 10 C 1.52995 * 109.47025 * 179.97438 * 9 8 7 11 11 C 1.53005 * 109.47025 * 179.97438 * 10 9 8 12 12 H 1.08995 * 110.54378 * 305.70072 * 11 10 9 13 13 C 1.51435 * 110.60705 * 68.55359 * 11 10 9 14 14 N 1.27924 * 106.97929 * 118.45541 * 13 11 10 15 15 N 1.39153 * 113.21291 * 0.14696 * 14 13 11 16 16 C 1.34954 * 111.12057 * 359.90085 * 15 14 13 17 17 O 1.21302 * 127.49831 * 180.02562 * 16 15 14 18 18 C 1.41542 * 119.64319 * 359.97438 * 6 5 4 19 19 C 1.41019 * 120.28014 * 180.02562 * 18 6 5 20 20 H 1.08007 * 120.00248 * 25.54583 * 19 18 6 21 21 C 1.39904 * 120.00314 * 205.54473 * 19 18 6 22 22 N 1.30899 * 119.99604 * 15.33543 * 21 19 18 23 23 Si 1.86794 * 120.00189 * 195.33488 * 21 19 18 24 24 H 1.48500 * 109.47314 * 90.00205 * 23 21 19 25 25 H 1.48500 * 109.47040 * 210.00110 * 23 21 19 26 26 H 1.48499 * 109.47411 * 330.00242 * 23 21 19 27 27 C 1.37840 * 119.82217 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.46956 * 60.00264 * 1 2 3 29 29 H 1.09007 * 109.46753 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47279 * 300.00309 * 1 2 3 31 31 H 1.07995 * 119.71673 * 359.97438 * 4 3 2 32 32 H 1.07995 * 119.89893 * 179.97438 * 5 4 3 33 33 H 0.96996 * 120.00016 * 179.72360 * 7 6 5 34 34 H 1.08999 * 109.46884 * 299.99637 * 8 7 6 35 35 H 1.08997 * 109.47389 * 60.00114 * 8 7 6 36 36 H 1.08995 * 109.46815 * 300.00181 * 9 8 7 37 37 H 1.09006 * 109.47101 * 60.00007 * 9 8 7 38 38 H 1.09001 * 109.47478 * 300.00260 * 10 9 8 39 39 H 1.08997 * 109.47256 * 59.99919 * 10 9 8 40 40 H 1.08001 * 126.42143 * 298.48146 * 13 11 10 41 41 H 0.96999 * 124.43593 * 179.87916 * 15 14 13 42 42 H 0.96998 * 119.99272 * 180.02562 * 22 21 19 43 43 H 1.08002 * 120.10636 * 0.04908 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2832 2.3783 0.0005 5 6 1.8940 3.6169 0.0011 6 6 3.2779 3.7124 0.0016 7 7 3.8915 4.9580 0.0080 8 6 3.0771 6.1758 0.0079 9 6 3.9928 7.4016 0.0149 10 6 3.1423 8.6734 0.0142 11 6 4.0579 9.8992 0.0218 12 1 4.7600 9.8470 0.8539 13 6 4.7984 10.0196 -1.2937 14 7 4.4464 11.1310 -1.8202 15 7 3.5366 11.8420 -1.0436 16 6 3.2410 11.1753 0.0919 17 8 2.4859 11.5211 0.9760 18 6 4.0610 2.5334 0.0022 19 6 5.4688 2.6149 0.0033 20 1 5.9589 3.4886 0.4071 21 6 6.2308 1.5640 -0.5186 22 7 5.6635 0.6544 -1.2698 23 14 8.0577 1.4590 -0.1436 24 1 8.2642 0.6645 1.0939 25 1 8.7585 0.8022 -1.2762 26 1 8.6029 2.8267 0.0496 27 6 3.4229 1.2794 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 0.2052 2.3130 0.0005 32 1 1.2924 4.5138 0.0011 33 1 4.8594 5.0218 0.0124 34 1 2.4521 6.1948 -0.8848 35 1 2.4441 6.1897 0.8951 36 1 4.6182 7.3828 0.9073 37 1 4.6255 7.3876 -0.8726 38 1 2.5171 8.6920 -0.8785 39 1 2.5093 8.6877 0.9014 40 1 5.4915 9.3020 -1.7074 41 1 3.1640 12.7041 -1.2865 42 1 6.1917 -0.0743 -1.6313 43 1 4.0101 0.3729 0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164384028.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:17 Heat of formation + Delta-G solvation = -3.123866 kcal Electronic energy + Delta-G solvation = -25289.111707 eV Core-core repulsion = 21528.516183 eV Total energy + Delta-G solvation = -3760.595525 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.60816 -38.67812 -37.76316 -37.18911 -35.65924 -33.76019 -32.99348 -31.34806 -29.82607 -29.37892 -27.71285 -25.85753 -25.11941 -24.24289 -22.60524 -21.55900 -21.07432 -20.38996 -19.88649 -18.14432 -17.59916 -16.47797 -16.22642 -15.79320 -15.73030 -15.13730 -15.11065 -14.98735 -14.69649 -14.63948 -14.34337 -14.00923 -13.32524 -13.17564 -12.78917 -12.67111 -12.45498 -12.20084 -11.94673 -11.75576 -11.48468 -11.31742 -11.24443 -11.12320 -11.04614 -10.97141 -10.80437 -10.48776 -10.13167 -10.09828 -9.92610 -9.46373 -9.35691 -9.10877 -8.34836 -7.38338 -6.70264 -5.97257 -4.18765 1.21191 2.24545 2.35487 2.80851 3.10045 3.11219 3.19096 3.26380 3.49506 3.85036 3.96387 4.32284 4.44983 4.49577 4.66690 4.72147 4.94305 5.12747 5.30388 5.35656 5.54500 5.64515 5.66546 5.72018 5.77096 5.84537 5.87569 5.99067 6.20687 6.24376 6.25685 6.28160 6.41037 6.89830 7.01062 7.13907 7.19310 7.47947 7.55971 7.56012 7.66318 7.93765 8.08036 8.27270 8.61836 8.82040 8.88100 8.99361 9.14655 10.28382 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011789 B = 0.002979 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.451434 B = 9396.797996 C =11402.953048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.331 6.331 3 C 0.092 3.908 4 C -0.277 4.277 5 C -0.149 4.149 6 C 0.093 3.907 7 N -0.750 5.750 8 C 0.137 3.863 9 C -0.129 4.129 10 C -0.087 4.087 11 C -0.149 4.149 12 H 0.139 0.861 13 C 0.088 3.912 14 N -0.239 5.239 15 N -0.579 5.579 16 C 0.502 3.498 17 O -0.497 6.497 18 C 0.097 3.903 19 C -0.461 4.461 20 H 0.075 0.925 21 C 0.075 3.925 22 N -0.793 5.793 23 Si 0.906 3.094 24 H -0.269 1.269 25 H -0.280 1.280 26 H -0.264 1.264 27 C -0.171 4.171 28 H 0.042 0.958 29 H 0.080 0.920 30 H 0.042 0.958 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.394 0.606 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.215 0.785 41 H 0.433 0.567 42 H 0.279 0.721 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.926 13.194 -0.328 13.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.246 6.246 3 C 0.048 3.952 4 C -0.298 4.298 5 C -0.173 4.173 6 C -0.005 4.005 7 N -0.386 5.386 8 C 0.012 3.988 9 C -0.167 4.167 10 C -0.126 4.126 11 C -0.173 4.173 12 H 0.157 0.843 13 C -0.126 4.126 14 N -0.044 5.044 15 N -0.327 5.327 16 C 0.287 3.713 17 O -0.369 6.369 18 C 0.092 3.908 19 C -0.492 4.492 20 H 0.093 0.907 21 C -0.142 4.142 22 N -0.419 5.419 23 Si 0.731 3.269 24 H -0.195 1.195 25 H -0.205 1.205 26 H -0.189 1.189 27 C -0.193 4.193 28 H 0.061 0.939 29 H 0.098 0.902 30 H 0.060 0.940 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.230 0.770 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.231 0.769 41 H 0.278 0.722 42 H 0.090 0.910 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.301 13.761 -0.718 13.841 hybrid contribution 0.541 0.096 0.530 0.763 sum -0.760 13.857 -0.187 13.879 Atomic orbital electron populations 1.22697 0.81264 1.01536 1.00253 1.85998 1.19030 1.29182 1.90398 1.18827 0.92442 0.82362 1.01609 1.20190 0.96931 0.92207 1.20425 1.19765 0.92285 0.95666 1.09577 1.17834 0.91014 0.85158 1.06509 1.43837 1.07282 1.01387 1.86135 1.20943 0.93628 0.84262 1.00001 1.21783 0.98659 0.92996 1.03217 1.21227 0.96919 0.90437 1.04024 1.21975 0.99403 0.95987 0.99902 0.84315 1.27277 0.97546 0.94401 0.93377 1.74882 1.03725 1.07178 1.18642 1.47649 1.42940 1.22930 1.19137 1.21386 0.81710 0.86399 0.81784 1.90823 1.36096 1.72881 1.37111 1.16957 0.92769 0.88541 0.92495 1.19125 0.90785 1.03153 1.36112 0.90740 1.25808 1.00684 0.94828 0.92855 1.69863 1.38076 1.10918 1.22998 0.86361 0.82362 0.79345 0.78847 1.19467 1.20492 1.18855 1.20367 0.89242 0.98739 1.10928 0.93949 0.90196 0.93983 0.88998 0.89202 0.77027 0.93810 0.93739 0.90837 0.90872 0.90970 0.89821 0.76888 0.72186 0.91029 0.85431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 9.81 101.05 0.99 1.64 16 2 O -0.33 -7.52 10.49 -19.61 -0.21 -7.73 16 3 C 0.09 2.27 6.67 -39.29 -0.26 2.01 16 4 C -0.28 -6.30 9.03 -39.19 -0.35 -6.65 16 5 C -0.15 -3.31 9.28 -39.46 -0.37 -3.68 16 6 C 0.09 2.14 6.68 -83.24 -0.56 1.59 16 7 N -0.75 -13.90 5.63 -58.17 -0.33 -14.22 16 8 C 0.14 1.94 4.90 -4.04 -0.02 1.92 16 9 C -0.13 -1.24 5.19 -26.73 -0.14 -1.37 16 10 C -0.09 -0.75 4.74 -26.73 -0.13 -0.88 16 11 C -0.15 -1.16 3.04 -92.08 -0.28 -1.44 16 12 H 0.14 0.89 8.14 -51.93 -0.42 0.47 16 13 C 0.09 0.58 11.17 -13.54 -0.15 0.43 16 14 N -0.24 -2.06 12.22 32.83 0.40 -1.65 16 15 N -0.58 -5.15 7.13 31.51 0.22 -4.93 16 16 C 0.50 5.30 8.26 -10.42 -0.09 5.22 16 17 O -0.50 -7.02 18.03 5.54 0.10 -6.92 16 18 C 0.10 2.49 5.58 -106.65 -0.60 1.90 16 19 C -0.46 -11.49 8.51 -37.91 -0.32 -11.81 16 20 H 0.07 1.72 6.67 -52.48 -0.35 1.37 16 21 C 0.08 1.84 5.18 -17.33 -0.09 1.75 16 22 N -0.79 -20.43 10.87 55.55 0.60 -19.82 16 23 Si 0.91 18.12 29.59 -169.99 -5.03 13.09 16 24 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 25 H -0.28 -5.55 7.11 56.52 0.40 -5.14 16 26 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 27 C -0.17 -4.57 8.60 -38.80 -0.33 -4.91 16 28 H 0.04 0.68 7.65 -51.93 -0.40 0.28 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.04 0.66 7.65 -51.93 -0.40 0.26 16 31 H 0.09 1.86 6.26 -52.49 -0.33 1.53 16 32 H 0.09 1.77 6.70 -52.49 -0.35 1.42 16 33 H 0.39 7.10 6.68 -40.82 -0.27 6.82 16 34 H 0.04 0.64 7.95 -51.93 -0.41 0.23 16 35 H 0.04 0.65 7.93 -51.93 -0.41 0.24 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.62 7.33 -51.93 -0.38 0.24 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.21 0.75 7.73 -52.49 -0.41 0.34 16 41 H 0.43 3.04 8.96 -183.31 -1.64 1.40 16 42 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 43 H 0.13 3.60 6.14 -52.49 -0.32 3.28 16 LS Contribution 358.59 15.07 5.40 5.40 Total: -1.00 -31.85 358.59 -8.44 -40.29 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -6.92 Total: 10.79 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: -2.69 Total: -14.30 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 0.90 Total: -40.63 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.11 Total: -14.65 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.09 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.85 -8.44 -40.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164384028.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.169 kcal (2) G-P(sol) polarization free energy of solvation -31.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds