Wall clock time and date at job start Tue Mar 31 2020 11:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35957 * 116.99717 * 2 1 4 4 C 1.39421 * 119.82173 * 0.02562 * 3 2 1 5 5 C 1.38099 * 120.56856 * 179.97438 * 4 3 2 6 6 C 1.38716 * 120.20019 * 359.97438 * 5 4 3 7 7 N 1.38858 * 120.17877 * 180.27677 * 6 5 4 8 8 C 1.46504 * 119.99809 * 359.72026 * 7 6 5 9 9 C 1.53005 * 109.46940 * 180.02562 * 8 7 6 10 10 C 1.52995 * 109.47025 * 179.97438 * 9 8 7 11 11 C 1.53005 * 109.47025 * 179.97438 * 10 9 8 12 12 H 1.08995 * 110.54378 * 305.70072 * 11 10 9 13 13 C 1.51435 * 110.60705 * 68.55359 * 11 10 9 14 14 N 1.27924 * 106.97929 * 118.45541 * 13 11 10 15 15 N 1.39153 * 113.21291 * 0.14696 * 14 13 11 16 16 C 1.34954 * 111.12057 * 359.90085 * 15 14 13 17 17 O 1.21302 * 127.49831 * 180.02562 * 16 15 14 18 18 C 1.41542 * 119.64319 * 359.97438 * 6 5 4 19 19 C 1.41019 * 120.28014 * 180.02562 * 18 6 5 20 20 H 1.08007 * 120.00248 * 25.54583 * 19 18 6 21 21 C 1.39904 * 120.00314 * 205.54473 * 19 18 6 22 22 N 1.30899 * 119.99604 * 15.33543 * 21 19 18 23 23 Si 1.86794 * 120.00189 * 195.33488 * 21 19 18 24 24 H 1.48500 * 109.47314 * 90.00205 * 23 21 19 25 25 H 1.48500 * 109.47040 * 210.00110 * 23 21 19 26 26 H 1.48499 * 109.47411 * 330.00242 * 23 21 19 27 27 C 1.37840 * 119.82217 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.46956 * 60.00264 * 1 2 3 29 29 H 1.09007 * 109.46753 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47279 * 300.00309 * 1 2 3 31 31 H 1.07995 * 119.71673 * 359.97438 * 4 3 2 32 32 H 1.07995 * 119.89893 * 179.97438 * 5 4 3 33 33 H 0.96996 * 120.00016 * 179.72360 * 7 6 5 34 34 H 1.08999 * 109.46884 * 299.99637 * 8 7 6 35 35 H 1.08997 * 109.47389 * 60.00114 * 8 7 6 36 36 H 1.08995 * 109.46815 * 300.00181 * 9 8 7 37 37 H 1.09006 * 109.47101 * 60.00007 * 9 8 7 38 38 H 1.09001 * 109.47478 * 300.00260 * 10 9 8 39 39 H 1.08997 * 109.47256 * 59.99919 * 10 9 8 40 40 H 1.08001 * 126.42143 * 298.48146 * 13 11 10 41 41 H 0.96999 * 124.43593 * 179.87916 * 15 14 13 42 42 H 0.96998 * 119.99272 * 180.02562 * 22 21 19 43 43 H 1.08002 * 120.10636 * 0.04908 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2832 2.3783 0.0005 5 6 1.8940 3.6169 0.0011 6 6 3.2779 3.7124 0.0016 7 7 3.8915 4.9580 0.0080 8 6 3.0771 6.1758 0.0079 9 6 3.9928 7.4016 0.0149 10 6 3.1423 8.6734 0.0142 11 6 4.0579 9.8992 0.0218 12 1 4.7600 9.8470 0.8539 13 6 4.7984 10.0196 -1.2937 14 7 4.4464 11.1310 -1.8202 15 7 3.5366 11.8420 -1.0436 16 6 3.2410 11.1753 0.0919 17 8 2.4859 11.5211 0.9760 18 6 4.0610 2.5334 0.0022 19 6 5.4688 2.6149 0.0033 20 1 5.9589 3.4886 0.4071 21 6 6.2308 1.5640 -0.5186 22 7 5.6635 0.6544 -1.2698 23 14 8.0577 1.4590 -0.1436 24 1 8.2642 0.6645 1.0939 25 1 8.7585 0.8022 -1.2762 26 1 8.6029 2.8267 0.0496 27 6 3.4229 1.2794 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 0.2052 2.3130 0.0005 32 1 1.2924 4.5138 0.0011 33 1 4.8594 5.0218 0.0124 34 1 2.4521 6.1948 -0.8848 35 1 2.4441 6.1897 0.8951 36 1 4.6182 7.3828 0.9073 37 1 4.6255 7.3876 -0.8726 38 1 2.5171 8.6920 -0.8785 39 1 2.5093 8.6877 0.9014 40 1 5.4915 9.3020 -1.7074 41 1 3.1640 12.7041 -1.2865 42 1 6.1917 -0.0743 -1.6313 43 1 4.0101 0.3729 0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164384028.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:15 Heat of formation + Delta-G solvation = -25.285690 kcal Electronic energy + Delta-G solvation = -25290.072716 eV Core-core repulsion = 21528.516183 eV Total energy + Delta-G solvation = -3761.556533 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.30137 -40.39508 -38.75674 -38.56446 -36.84482 -35.32713 -34.39144 -32.14328 -31.50852 -30.61931 -29.10239 -27.27399 -26.85063 -25.43409 -23.51591 -22.65753 -21.90952 -21.65679 -21.49021 -19.36843 -18.87297 -17.96283 -17.43346 -17.17654 -16.80855 -16.46507 -16.27381 -16.22956 -15.92079 -15.84866 -15.44824 -14.98578 -14.84894 -14.38300 -14.16089 -13.79337 -13.73665 -13.34025 -13.20715 -13.12006 -13.02920 -12.76411 -12.68174 -12.52935 -12.23979 -12.13010 -12.01162 -11.76543 -11.60065 -11.46964 -11.11133 -10.90747 -10.83418 -10.16679 -9.93963 -9.25916 -8.51324 -7.69408 -6.04171 0.58375 1.04545 1.38478 1.46207 1.54717 1.58380 1.60156 1.71568 2.29027 2.79047 2.85849 2.95099 3.15670 3.27591 3.74115 3.84807 3.96142 4.21541 4.36322 4.43377 4.47259 4.51287 4.55322 4.57717 4.62497 4.77238 4.78192 4.85710 4.97393 5.08705 5.14061 5.21488 5.34451 5.37943 5.38144 5.62684 5.65820 5.81678 5.89761 6.08073 6.26729 6.45297 6.49467 6.85963 6.86992 7.04523 7.09514 7.33093 7.46804 8.49791 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011789 B = 0.002979 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.451434 B = 9396.797996 C =11402.953048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.356 6.356 3 C 0.076 3.924 4 C -0.274 4.274 5 C -0.159 4.159 6 C 0.094 3.906 7 N -0.745 5.745 8 C 0.132 3.868 9 C -0.116 4.116 10 C -0.077 4.077 11 C -0.144 4.144 12 H 0.160 0.840 13 C 0.110 3.890 14 N -0.264 5.264 15 N -0.576 5.576 16 C 0.493 3.507 17 O -0.544 6.544 18 C 0.066 3.934 19 C -0.482 4.482 20 H 0.088 0.912 21 C 0.031 3.969 22 N -0.833 5.833 23 Si 0.979 3.021 24 H -0.273 1.273 25 H -0.277 1.277 26 H -0.246 1.246 27 C -0.207 4.207 28 H 0.050 0.950 29 H 0.112 0.888 30 H 0.053 0.947 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.397 0.603 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.250 0.750 41 H 0.438 0.562 42 H 0.281 0.719 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.119 14.530 -0.481 14.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.272 6.272 3 C 0.031 3.969 4 C -0.295 4.295 5 C -0.183 4.183 6 C -0.006 4.006 7 N -0.380 5.380 8 C 0.008 3.992 9 C -0.153 4.153 10 C -0.116 4.116 11 C -0.167 4.167 12 H 0.177 0.823 13 C -0.103 4.103 14 N -0.069 5.069 15 N -0.323 5.323 16 C 0.280 3.720 17 O -0.419 6.419 18 C 0.061 3.939 19 C -0.512 4.512 20 H 0.106 0.894 21 C -0.183 4.183 22 N -0.460 5.460 23 Si 0.801 3.199 24 H -0.198 1.198 25 H -0.202 1.202 26 H -0.169 1.169 27 C -0.229 4.229 28 H 0.068 0.932 29 H 0.130 0.870 30 H 0.072 0.928 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.232 0.768 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.102 0.898 37 H 0.111 0.889 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.266 0.734 41 H 0.284 0.716 42 H 0.091 0.909 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.493 15.144 -0.899 15.178 hybrid contribution 0.161 -0.331 0.557 0.667 sum -0.332 14.813 -0.343 14.820 Atomic orbital electron populations 1.23050 0.78237 1.04106 1.01104 1.85949 1.22222 1.28656 1.90363 1.18938 0.92243 0.83725 1.01987 1.20509 0.98212 0.91744 1.19022 1.20092 0.92394 0.96535 1.09319 1.17991 0.91432 0.86190 1.05024 1.43965 1.07809 1.01234 1.85034 1.21167 0.94196 0.84192 0.99687 1.21681 0.98021 0.90886 1.04742 1.21067 0.96744 0.90272 1.03531 1.21976 0.99226 0.94039 1.01485 0.82319 1.27909 0.96480 0.93934 0.91972 1.74955 1.04627 1.08310 1.19030 1.47726 1.42685 1.23179 1.18707 1.21812 0.81335 0.87382 0.81510 1.90793 1.38237 1.74151 1.38745 1.17316 0.93783 0.89304 0.93482 1.19451 0.90971 1.04197 1.36597 0.89392 1.26713 1.05348 0.94100 0.92126 1.69979 1.39977 1.11759 1.24307 0.85242 0.76485 0.80008 0.78184 1.19807 1.20243 1.16906 1.20340 0.90373 0.98401 1.13740 0.93185 0.86957 0.92827 0.86402 0.86542 0.76776 0.93982 0.94027 0.89783 0.88922 0.91210 0.90809 0.73391 0.71650 0.90857 0.88353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 9.81 113.37 1.11 2.07 16 2 O -0.36 -16.41 10.49 -93.07 -0.98 -17.39 16 3 C 0.08 3.82 6.67 22.46 0.15 3.97 16 4 C -0.27 -12.28 9.03 22.52 0.20 -12.08 16 5 C -0.16 -6.89 9.28 22.35 0.21 -6.69 16 6 C 0.09 4.28 6.68 38.96 0.26 4.54 16 7 N -0.75 -26.34 5.63 -337.96 -1.90 -28.24 16 8 C 0.13 3.40 4.90 86.38 0.42 3.83 16 9 C -0.12 -1.82 5.19 30.59 0.16 -1.66 16 10 C -0.08 -1.12 4.74 30.59 0.15 -0.98 16 11 C -0.14 -1.84 3.04 -11.74 -0.04 -1.88 16 12 H 0.16 1.48 8.14 -2.39 -0.02 1.46 16 13 C 0.11 1.06 11.17 88.91 0.99 2.05 16 14 N -0.26 -3.91 12.22 -49.90 -0.61 -4.52 16 15 N -0.58 -9.55 7.13 -172.49 -1.23 -10.78 16 16 C 0.49 9.88 8.26 87.94 0.73 10.60 16 17 O -0.54 -15.36 18.03 -3.10 -0.06 -15.42 16 18 C 0.07 3.45 5.58 -21.18 -0.12 3.34 16 19 C -0.48 -24.25 8.51 23.36 0.20 -24.05 16 20 H 0.09 4.00 6.67 -2.91 -0.02 3.99 16 21 C 0.03 1.51 5.18 85.24 0.44 1.95 16 22 N -0.83 -44.55 10.87 21.82 0.24 -44.31 16 23 Si 0.98 37.10 29.59 68.60 2.03 39.13 16 24 H -0.27 -10.38 7.11 99.48 0.71 -9.68 16 25 H -0.28 -10.29 7.11 99.48 0.71 -9.58 16 26 H -0.25 -8.50 7.11 99.48 0.71 -7.79 16 27 C -0.21 -11.52 8.60 22.78 0.20 -11.33 16 28 H 0.05 1.52 7.65 -2.39 -0.02 1.50 16 29 H 0.11 2.83 8.14 -2.38 -0.02 2.81 16 30 H 0.05 1.59 7.65 -2.39 -0.02 1.57 16 31 H 0.12 4.53 6.26 -2.91 -0.02 4.51 16 32 H 0.12 4.32 6.70 -2.91 -0.02 4.30 16 33 H 0.40 13.50 6.68 -92.71 -0.62 12.88 16 34 H 0.04 1.12 7.95 -2.39 -0.02 1.10 16 35 H 0.04 1.12 7.93 -2.39 -0.02 1.10 16 36 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.09 1.14 7.33 -2.38 -0.02 1.12 16 38 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.25 0.45 7.73 -2.91 -0.02 0.43 16 41 H 0.44 5.91 8.96 -213.93 -1.92 3.99 16 42 H 0.28 13.84 8.30 -92.71 -0.77 13.07 16 43 H 0.10 5.93 6.14 -2.91 -0.02 5.91 16 Total: -1.00 -72.72 358.59 1.08 -71.63 By element: Atomic # 1 Polarization: 37.66 SS G_CDS: -1.47 Total: 36.19 kcal Atomic # 6 Polarization: -31.37 SS G_CDS: 5.06 Total: -26.30 kcal Atomic # 7 Polarization: -84.34 SS G_CDS: -3.51 Total: -87.85 kcal Atomic # 8 Polarization: -31.77 SS G_CDS: -1.03 Total: -32.80 kcal Atomic # 14 Polarization: 37.10 SS G_CDS: 2.03 Total: 39.13 kcal Total: -72.72 1.08 -71.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164384028.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.349 kcal (2) G-P(sol) polarization free energy of solvation -72.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds