Wall clock time and date at job start Tue Mar 31 2020 11:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35985 * 116.99740 * 2 1 4 4 C 1.39380 * 119.82013 * 0.02562 * 3 2 1 5 5 C 1.37602 * 120.59935 * 179.97438 * 4 3 2 6 6 C 1.39205 * 120.02709 * 359.97438 * 5 4 3 7 7 N 1.37673 * 133.03308 * 179.97438 * 6 5 4 8 8 H 0.97007 * 125.61339 * 0.04202 * 7 6 5 9 9 C 1.38118 * 108.77377 * 180.02562 * 7 6 5 10 10 C 1.47042 * 125.43027 * 180.26586 * 9 7 6 11 11 O 1.21652 * 120.00276 * 179.69222 * 10 9 7 12 12 N 1.34785 * 120.00378 * 359.68952 * 10 9 7 13 13 C 1.46496 * 120.00411 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47225 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.47298 * 180.02562 * 14 13 12 16 16 N 1.46493 * 109.47155 * 180.02562 * 15 14 13 17 17 C 1.36936 * 120.00089 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99769 * 359.97438 * 17 16 15 19 19 C 1.38815 * 120.00071 * 179.97438 * 17 16 15 20 20 N 1.31625 * 119.99876 * 179.97438 * 19 17 16 21 21 Si 1.86795 * 119.99957 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47389 * 90.00111 * 21 19 17 23 23 H 1.48506 * 109.46670 * 209.99932 * 21 19 17 24 24 H 1.48501 * 109.47032 * 329.99443 * 21 19 17 25 25 C 1.35885 * 109.13813 * 359.97438 * 9 7 6 26 26 C 1.40812 * 119.61598 * 0.02562 * 6 5 4 27 27 C 1.37842 * 119.82018 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.46765 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47111 * 299.99877 * 1 2 3 30 30 H 1.08995 * 109.47574 * 60.00155 * 1 2 3 31 31 H 1.07999 * 119.70314 * 359.95452 * 4 3 2 32 32 H 1.08004 * 119.98227 * 179.97438 * 5 4 3 33 33 H 0.97000 * 119.99575 * 0.02562 * 12 10 9 34 34 H 1.08998 * 109.46904 * 300.00142 * 13 12 10 35 35 H 1.08999 * 109.46904 * 60.00059 * 13 12 10 36 36 H 1.09003 * 109.47051 * 300.00190 * 14 13 12 37 37 H 1.09002 * 109.46966 * 59.99426 * 14 13 12 38 38 H 1.09006 * 109.46602 * 299.99466 * 15 14 13 39 39 H 1.08999 * 109.46977 * 59.99616 * 15 14 13 40 40 H 0.97000 * 120.00466 * 359.97438 * 16 15 14 41 41 H 0.96996 * 119.99829 * 179.97438 * 20 19 17 42 42 H 1.07999 * 126.12113 * 180.02562 * 25 9 7 43 43 H 1.08001 * 120.16613 * 0.03212 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2835 2.3782 0.0005 5 6 1.8914 3.6126 0.0011 6 6 3.2804 3.7051 0.0016 7 7 4.1510 4.7716 0.0018 8 1 3.8972 5.7079 0.0021 9 6 5.4451 4.2890 0.0018 10 6 6.6624 5.1138 0.0075 11 8 7.7569 4.5828 0.0127 12 7 6.5657 6.4582 0.0070 13 6 7.7785 7.2799 0.0121 14 6 7.3916 8.7602 0.0110 15 6 8.6582 9.6184 0.0157 16 7 8.2878 11.0357 0.0152 17 6 9.2620 11.9980 0.0184 18 1 10.3035 11.7121 0.0218 19 6 8.9109 13.3411 0.0175 20 7 9.8474 14.2660 0.0211 21 14 7.1096 13.8356 0.0124 22 1 6.6283 13.9667 1.4111 23 1 6.9553 15.1359 -0.6881 24 1 6.3133 12.7974 -0.6899 25 6 5.4140 2.9306 0.0023 26 6 4.0560 2.5299 0.0011 27 6 3.4231 1.2795 0.0005 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 0.2055 2.3126 0.0002 32 1 1.2906 4.5101 0.0011 33 1 5.6930 6.8816 0.0032 34 1 8.3637 7.0584 0.9046 35 1 8.3713 7.0582 -0.8753 36 1 6.8062 8.9820 -0.8813 37 1 6.7989 8.9815 0.8986 38 1 9.2440 9.3966 0.9078 39 1 9.2505 9.3969 -0.8722 40 1 7.3524 11.2926 0.0118 41 1 9.6021 15.2045 0.0200 42 1 6.2716 2.2741 0.0028 43 1 4.0111 0.3737 0.0004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165491163.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:53 Heat of formation + Delta-G solvation = -2.745878 kcal Electronic energy + Delta-G solvation = -24350.545393 eV Core-core repulsion = 20589.966260 eV Total energy + Delta-G solvation = -3760.579134 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.97481 -39.99837 -39.24359 -36.33237 -36.00880 -34.63373 -32.64463 -32.11703 -30.41166 -29.81450 -29.16506 -27.29133 -25.95369 -24.01851 -22.51897 -22.20613 -21.48236 -21.28502 -20.32998 -18.92204 -18.05307 -17.67447 -17.32033 -16.25316 -16.14657 -16.02926 -15.95816 -15.05884 -15.05023 -14.52422 -14.21575 -14.17004 -14.15650 -13.75337 -13.58392 -13.41234 -13.12534 -12.86678 -12.69115 -12.42548 -12.33776 -12.10174 -11.29813 -11.17998 -11.12618 -10.98035 -10.95827 -10.78851 -10.37427 -10.27521 -10.19906 -9.64207 -9.36318 -8.95500 -8.42692 -7.97777 -7.29796 -5.81302 -3.17817 0.31183 1.21072 1.73342 2.47926 2.76164 2.97182 3.04942 3.31238 3.33572 3.40149 3.43668 4.21697 4.36358 4.48468 4.53749 4.58324 4.72152 4.75396 4.80250 4.91981 4.96826 5.03873 5.09367 5.12764 5.38294 5.46575 5.48783 5.57562 5.67155 5.77513 5.81687 5.85336 5.91312 6.00047 6.02891 6.16372 6.26169 6.46224 6.61096 6.64080 6.92018 7.04310 7.17964 7.83306 7.94469 8.37329 9.15713 9.87679 10.06754 11.37006 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.026732 B = 0.001856 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.184651 B =15085.203821 C =16101.332724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.095 3.905 4 C -0.166 4.166 5 C -0.092 4.092 6 C 0.083 3.917 7 N -0.578 5.578 8 H 0.418 0.582 9 C 0.030 3.970 10 C 0.580 3.420 11 O -0.518 6.518 12 N -0.725 5.725 13 C 0.122 3.878 14 C -0.142 4.142 15 C 0.160 3.840 16 N -0.757 5.757 17 C -0.247 4.247 18 H 0.091 0.909 19 C 0.004 3.996 20 N -0.933 5.933 21 Si 0.887 3.113 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.279 1.279 25 C -0.114 4.114 26 C -0.080 4.080 27 C -0.102 4.102 28 H 0.098 0.902 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.133 0.867 32 H 0.127 0.873 33 H 0.395 0.605 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.032 0.968 39 H 0.031 0.969 40 H 0.360 0.640 41 H 0.260 0.740 42 H 0.159 0.841 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.156 -28.335 -0.061 35.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.050 3.950 4 C -0.185 4.185 5 C -0.112 4.112 6 C -0.025 4.025 7 N -0.184 5.184 8 H 0.256 0.744 9 C -0.080 4.080 10 C 0.365 3.635 11 O -0.393 6.393 12 N -0.375 5.375 13 C -0.001 4.001 14 C -0.181 4.181 15 C 0.033 3.967 16 N -0.402 5.402 17 C -0.377 4.377 18 H 0.109 0.891 19 C -0.191 4.191 20 N -0.580 5.580 21 Si 0.717 3.283 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.205 1.205 25 C -0.141 4.141 26 C -0.084 4.084 27 C -0.121 4.121 28 H 0.117 0.883 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.151 0.849 32 H 0.145 0.855 33 H 0.229 0.771 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.050 0.950 39 H 0.049 0.951 40 H 0.193 0.807 41 H 0.070 0.930 42 H 0.176 0.824 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -20.985 -28.610 -0.057 35.481 hybrid contribution -2.187 1.466 -0.019 2.633 sum -23.172 -27.145 -0.075 35.690 Atomic orbital electron populations 1.23030 0.78590 1.03897 1.01192 1.86086 1.21121 1.26606 1.89495 1.18570 0.91869 0.84107 1.00481 1.20998 0.99927 0.91388 1.06237 1.19847 0.90319 0.97937 1.03133 1.18243 0.91539 0.86925 1.05830 1.41916 1.04137 1.07888 1.64446 0.74376 1.20231 0.83408 0.94033 1.10321 1.17188 0.87311 0.81757 0.77198 1.90877 1.26511 1.72504 1.49423 1.45978 1.10615 1.05753 1.75199 1.21433 0.85940 0.89484 1.03254 1.22011 1.00619 0.92865 1.02583 1.20495 0.93150 0.83866 0.99228 1.42672 1.05162 1.01060 1.91338 1.19077 0.89569 0.85844 1.43220 0.89091 1.24690 0.96940 0.95556 1.01964 1.69704 1.31077 0.99882 1.57381 0.86519 0.86334 0.77732 0.77714 1.21073 1.21661 1.20486 1.20870 0.95929 0.92483 1.04790 1.17844 0.93013 0.91862 1.05721 1.19713 0.91139 0.96671 1.04617 0.88326 0.92764 0.92757 0.84883 0.85474 0.77127 0.90633 0.90636 0.91326 0.91308 0.95045 0.95097 0.80729 0.92999 0.82383 0.84752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.11 16 2 O -0.32 -2.60 10.49 -19.69 -0.21 -2.81 16 3 C 0.10 0.82 6.67 -39.30 -0.26 0.56 16 4 C -0.17 -1.17 9.01 -39.39 -0.35 -1.52 16 5 C -0.09 -0.66 10.06 -39.45 -0.40 -1.06 16 6 C 0.08 0.74 7.25 -83.91 -0.61 0.14 16 7 N -0.58 -4.59 6.08 -7.33 -0.04 -4.63 16 8 H 0.42 2.10 8.12 -40.82 -0.33 1.77 16 9 C 0.03 0.31 6.97 -82.31 -0.57 -0.26 16 10 C 0.58 6.97 7.80 -12.69 -0.10 6.87 16 11 O -0.52 -8.08 16.84 5.23 0.09 -7.99 16 12 N -0.72 -7.33 5.55 -61.51 -0.34 -7.68 16 13 C 0.12 1.46 5.67 -4.04 -0.02 1.43 16 14 C -0.14 -1.88 5.44 -26.73 -0.15 -2.03 16 15 C 0.16 2.93 6.26 -4.05 -0.03 2.91 16 16 N -0.76 -17.60 5.41 -59.91 -0.32 -17.92 16 17 C -0.25 -6.99 10.47 -15.06 -0.16 -7.14 16 18 H 0.09 2.75 8.06 -52.48 -0.42 2.33 16 19 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 20 N -0.93 -29.20 13.97 55.49 0.78 -28.43 16 21 Si 0.89 21.72 27.74 -169.99 -4.71 17.00 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.28 -6.34 6.52 56.52 0.37 -5.97 16 25 C -0.11 -1.20 10.53 -39.15 -0.41 -1.61 16 26 C -0.08 -0.80 6.16 -106.93 -0.66 -1.46 16 27 C -0.10 -0.95 10.04 -39.01 -0.39 -1.34 16 28 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.05 0.17 7.65 -51.93 -0.40 -0.22 16 30 H 0.05 0.17 7.65 -51.93 -0.40 -0.22 16 31 H 0.13 0.60 6.26 -52.49 -0.33 0.28 16 32 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 33 H 0.40 2.87 7.53 -40.82 -0.31 2.56 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.36 8.04 5.53 -40.82 -0.23 7.82 16 41 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 42 H 0.16 1.55 8.06 -52.49 -0.42 1.13 16 43 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 364.71 15.07 5.50 5.50 Total: -1.00 -35.55 364.71 -8.29 -43.84 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -5.81 Total: 6.49 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -3.21 Total: -3.37 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: 0.07 Total: -58.65 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: -0.12 Total: -10.80 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.71 Total: 17.00 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.55 -8.29 -43.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165491163.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.092 kcal (2) G-P(sol) polarization free energy of solvation -35.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds