Wall clock time and date at job start Tue Mar 31 2020 11:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35985 * 116.99740 * 2 1 4 4 C 1.39380 * 119.82013 * 0.02562 * 3 2 1 5 5 C 1.37602 * 120.59935 * 179.97438 * 4 3 2 6 6 C 1.39205 * 120.02709 * 359.97438 * 5 4 3 7 7 N 1.37673 * 133.03308 * 179.97438 * 6 5 4 8 8 H 0.97007 * 125.61339 * 0.04202 * 7 6 5 9 9 C 1.38118 * 108.77377 * 180.02562 * 7 6 5 10 10 C 1.47042 * 125.43027 * 180.26586 * 9 7 6 11 11 O 1.21652 * 120.00276 * 179.69222 * 10 9 7 12 12 N 1.34785 * 120.00378 * 359.68952 * 10 9 7 13 13 C 1.46496 * 120.00411 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47225 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.47298 * 180.02562 * 14 13 12 16 16 N 1.46493 * 109.47155 * 180.02562 * 15 14 13 17 17 C 1.36936 * 120.00089 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99769 * 359.97438 * 17 16 15 19 19 C 1.38815 * 120.00071 * 179.97438 * 17 16 15 20 20 N 1.31625 * 119.99876 * 179.97438 * 19 17 16 21 21 Si 1.86795 * 119.99957 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47389 * 90.00111 * 21 19 17 23 23 H 1.48506 * 109.46670 * 209.99932 * 21 19 17 24 24 H 1.48501 * 109.47032 * 329.99443 * 21 19 17 25 25 C 1.35885 * 109.13813 * 359.97438 * 9 7 6 26 26 C 1.40812 * 119.61598 * 0.02562 * 6 5 4 27 27 C 1.37842 * 119.82018 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.46765 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47111 * 299.99877 * 1 2 3 30 30 H 1.08995 * 109.47574 * 60.00155 * 1 2 3 31 31 H 1.07999 * 119.70314 * 359.95452 * 4 3 2 32 32 H 1.08004 * 119.98227 * 179.97438 * 5 4 3 33 33 H 0.97000 * 119.99575 * 0.02562 * 12 10 9 34 34 H 1.08998 * 109.46904 * 300.00142 * 13 12 10 35 35 H 1.08999 * 109.46904 * 60.00059 * 13 12 10 36 36 H 1.09003 * 109.47051 * 300.00190 * 14 13 12 37 37 H 1.09002 * 109.46966 * 59.99426 * 14 13 12 38 38 H 1.09006 * 109.46602 * 299.99466 * 15 14 13 39 39 H 1.08999 * 109.46977 * 59.99616 * 15 14 13 40 40 H 0.97000 * 120.00466 * 359.97438 * 16 15 14 41 41 H 0.96996 * 119.99829 * 179.97438 * 20 19 17 42 42 H 1.07999 * 126.12113 * 180.02562 * 25 9 7 43 43 H 1.08001 * 120.16613 * 0.03212 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2835 2.3782 0.0005 5 6 1.8914 3.6126 0.0011 6 6 3.2804 3.7051 0.0016 7 7 4.1510 4.7716 0.0018 8 1 3.8972 5.7079 0.0021 9 6 5.4451 4.2890 0.0018 10 6 6.6624 5.1138 0.0075 11 8 7.7569 4.5828 0.0127 12 7 6.5657 6.4582 0.0070 13 6 7.7785 7.2799 0.0121 14 6 7.3916 8.7602 0.0110 15 6 8.6582 9.6184 0.0157 16 7 8.2878 11.0357 0.0152 17 6 9.2620 11.9980 0.0184 18 1 10.3035 11.7121 0.0218 19 6 8.9109 13.3411 0.0175 20 7 9.8474 14.2660 0.0211 21 14 7.1096 13.8356 0.0124 22 1 6.6283 13.9667 1.4111 23 1 6.9553 15.1359 -0.6881 24 1 6.3133 12.7974 -0.6899 25 6 5.4140 2.9306 0.0023 26 6 4.0560 2.5299 0.0011 27 6 3.4231 1.2795 0.0005 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 0.2055 2.3126 0.0002 32 1 1.2906 4.5101 0.0011 33 1 5.6930 6.8816 0.0032 34 1 8.3637 7.0584 0.9046 35 1 8.3713 7.0582 -0.8753 36 1 6.8062 8.9820 -0.8813 37 1 6.7989 8.9815 0.8986 38 1 9.2440 9.3966 0.9078 39 1 9.2505 9.3969 -0.8722 40 1 7.3524 11.2926 0.0118 41 1 9.6021 15.2045 0.0200 42 1 6.2716 2.2741 0.0028 43 1 4.0111 0.3737 0.0004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165491163.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:52 Heat of formation + Delta-G solvation = -28.939360 kcal Electronic energy + Delta-G solvation = -24351.681228 eV Core-core repulsion = 20589.966260 eV Total energy + Delta-G solvation = -3761.714968 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.65783 -40.76264 -39.96713 -37.68308 -36.62337 -36.08266 -33.94075 -33.25531 -31.94187 -30.39886 -29.99401 -27.70303 -27.31112 -25.14380 -23.75689 -23.08399 -22.73746 -22.08269 -21.21249 -19.87341 -19.39430 -18.62882 -18.13317 -17.19199 -16.99552 -16.76800 -16.57440 -16.45573 -15.99015 -15.80233 -15.48629 -15.07901 -14.88911 -14.80373 -14.76101 -14.21574 -14.13086 -13.94265 -13.80371 -13.69437 -12.93634 -12.88298 -12.76556 -12.58089 -12.56050 -12.12486 -12.02661 -11.82321 -11.70139 -11.50734 -11.41214 -10.98594 -10.93520 -10.31416 -9.32422 -9.09455 -8.59966 -8.03778 -5.38921 -0.37754 0.58863 0.98256 1.37111 1.43016 1.50339 1.76222 1.96831 2.19588 2.47139 2.48499 2.80438 3.27476 3.51831 3.60441 3.68628 3.97675 4.03034 4.05422 4.19380 4.20933 4.30487 4.37568 4.44253 4.48297 4.50683 4.68235 4.69328 4.78368 4.83183 4.86344 5.01610 5.10979 5.15243 5.26859 5.27771 5.33093 5.38992 5.57305 5.74291 5.80950 6.19609 6.28181 6.46836 6.53196 6.95337 7.06769 7.81134 8.01873 9.17702 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.026732 B = 0.001856 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.184651 B =15085.203821 C =16101.332724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.340 6.340 3 C 0.090 3.910 4 C -0.162 4.162 5 C -0.087 4.087 6 C 0.077 3.923 7 N -0.562 5.562 8 H 0.433 0.567 9 C 0.023 3.977 10 C 0.583 3.417 11 O -0.561 6.561 12 N -0.709 5.709 13 C 0.130 3.870 14 C -0.123 4.123 15 C 0.153 3.847 16 N -0.758 5.758 17 C -0.243 4.243 18 H 0.053 0.947 19 C -0.067 4.067 20 N -0.985 5.985 21 Si 0.963 3.037 22 H -0.276 1.276 23 H -0.297 1.297 24 H -0.245 1.245 25 C -0.128 4.128 26 C -0.100 4.100 27 C -0.125 4.125 28 H 0.113 0.887 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.162 0.838 32 H 0.159 0.841 33 H 0.413 0.587 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.026 0.974 39 H 0.025 0.975 40 H 0.369 0.631 41 H 0.259 0.741 42 H 0.153 0.847 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.554 -28.748 -0.102 39.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.254 6.254 3 C 0.045 3.955 4 C -0.182 4.182 5 C -0.108 4.108 6 C -0.033 4.033 7 N -0.169 5.169 8 H 0.274 0.726 9 C -0.088 4.088 10 C 0.370 3.630 11 O -0.440 6.440 12 N -0.360 5.360 13 C 0.006 3.994 14 C -0.161 4.161 15 C 0.026 3.974 16 N -0.404 5.404 17 C -0.374 4.374 18 H 0.071 0.929 19 C -0.258 4.258 20 N -0.635 5.635 21 Si 0.789 3.211 22 H -0.202 1.202 23 H -0.224 1.224 24 H -0.169 1.169 25 C -0.156 4.156 26 C -0.105 4.105 27 C -0.145 4.145 28 H 0.132 0.868 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.180 0.820 32 H 0.176 0.824 33 H 0.249 0.751 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.044 0.956 39 H 0.043 0.957 40 H 0.202 0.798 41 H 0.067 0.933 42 H 0.170 0.830 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -25.445 -29.047 -0.099 38.616 hybrid contribution -0.804 1.461 -0.001 1.667 sum -26.248 -27.586 -0.100 38.079 Atomic orbital electron populations 1.23327 0.76540 1.05422 1.02340 1.86065 1.23333 1.26646 1.89370 1.18755 0.91806 0.85028 0.99942 1.21353 1.01329 0.90658 1.04817 1.20220 0.89627 0.99200 1.01710 1.18490 0.92349 0.86579 1.05846 1.41771 1.02972 1.08572 1.63578 0.72598 1.19883 0.83748 0.93645 1.11523 1.17350 0.87204 0.82121 0.76365 1.90856 1.28199 1.73345 1.51564 1.45737 1.10970 1.05048 1.74278 1.21207 0.86484 0.89014 1.02711 1.21772 0.98081 0.92147 1.04095 1.20662 0.95869 0.82244 0.98609 1.42630 1.04539 1.02091 1.91133 1.19059 0.89195 0.87246 1.41935 0.92917 1.25630 1.02518 0.95427 1.02262 1.69909 1.34035 1.00209 1.59367 0.85299 0.79977 0.77598 0.78211 1.20224 1.22384 1.16898 1.20981 0.96423 0.92939 1.05238 1.17960 0.92926 0.92805 1.06766 1.19823 0.92004 0.96602 1.06049 0.86843 0.91543 0.91534 0.82010 0.82360 0.75080 0.91330 0.91360 0.89837 0.89708 0.95566 0.95656 0.79757 0.93278 0.82956 0.85002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 113.37 1.11 1.22 16 2 O -0.34 -5.11 10.49 -93.39 -0.98 -6.09 16 3 C 0.09 1.45 6.67 22.45 0.15 1.60 16 4 C -0.16 -1.81 9.01 22.39 0.20 -1.60 16 5 C -0.09 -0.96 10.06 22.35 0.22 -0.74 16 6 C 0.08 1.22 7.25 39.09 0.28 1.50 16 7 N -0.56 -7.68 6.08 -177.12 -1.08 -8.76 16 8 H 0.43 2.93 8.12 -92.70 -0.75 2.17 16 9 C 0.02 0.45 6.97 39.92 0.28 0.73 16 10 C 0.58 13.60 7.80 86.55 0.67 14.27 16 11 O -0.56 -17.78 16.84 -4.20 -0.07 -17.85 16 12 N -0.71 -12.86 5.55 -466.74 -2.59 -15.45 16 13 C 0.13 2.88 5.67 86.38 0.49 3.37 16 14 C -0.12 -2.88 5.44 30.59 0.17 -2.72 16 15 C 0.15 5.40 6.26 86.38 0.54 5.95 16 16 N -0.76 -34.08 5.41 -343.46 -1.86 -35.93 16 17 C -0.24 -13.88 10.47 84.03 0.88 -13.00 16 18 H 0.05 3.33 8.06 -2.91 -0.02 3.30 16 19 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 20 N -0.99 -63.10 13.97 21.65 0.30 -62.80 16 21 Si 0.96 43.93 27.74 68.60 1.90 45.84 16 22 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 23 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 24 H -0.24 -9.70 6.52 99.48 0.65 -9.06 16 25 C -0.13 -2.76 10.53 22.55 0.24 -2.53 16 26 C -0.10 -1.98 6.16 -21.36 -0.13 -2.12 16 27 C -0.13 -2.35 10.04 22.64 0.23 -2.13 16 28 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.07 0.23 7.65 -2.39 -0.02 0.21 16 30 H 0.07 0.23 7.65 -2.39 -0.02 0.21 16 31 H 0.16 0.80 6.26 -2.91 -0.02 0.78 16 32 H 0.16 0.73 8.06 -2.91 -0.02 0.71 16 33 H 0.41 4.60 7.53 -92.71 -0.70 3.90 16 34 H 0.07 1.65 8.14 -2.39 -0.02 1.64 16 35 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 39 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.37 15.23 5.53 -92.71 -0.51 14.72 16 41 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 42 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 43 H 0.13 2.34 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -79.43 364.71 0.48 -78.95 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: -0.96 Total: 21.75 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: 5.80 Total: 0.35 kcal Atomic # 7 Polarization: -117.72 SS G_CDS: -5.22 Total: -122.94 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -1.05 Total: -23.94 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.90 Total: 45.84 kcal Total: -79.43 0.48 -78.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165491163.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.011 kcal (2) G-P(sol) polarization free energy of solvation -79.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds