Wall clock time and date at job start Tue Mar 31 2020 11:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35895 * 117.00245 * 2 1 4 4 C 1.36698 * 119.55244 * 0.02562 * 3 2 1 5 5 C 1.40009 * 119.42819 * 179.97438 * 4 3 2 6 6 C 1.40758 * 122.63252 * 180.02562 * 5 4 3 7 7 N 1.31284 * 119.10723 * 179.97438 * 6 5 4 8 8 N 1.28083 * 123.51176 * 359.97438 * 7 6 5 9 9 C 1.32130 * 123.25439 * 0.02562 * 8 7 6 10 10 N 1.38596 * 120.61776 * 179.97438 * 9 8 7 11 11 C 1.46497 * 119.99724 * 0.02562 * 10 9 8 12 12 C 1.53003 * 109.46983 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.47182 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47305 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99738 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99965 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00416 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99978 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47117 * 59.99881 * 18 16 14 20 20 H 1.48498 * 109.47120 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46974 * 299.99909 * 18 16 14 22 22 C 1.41318 * 118.77081 * 0.02562 * 9 8 7 23 23 C 1.39856 * 122.65558 * 180.02562 * 22 9 8 24 24 C 1.36708 * 119.44575 * 179.71528 * 23 22 9 25 25 O 1.35923 * 119.56087 * 180.24497 * 24 23 22 26 26 C 1.42909 * 116.99995 * 0.26178 * 25 24 23 27 27 H 1.08996 * 109.47672 * 59.99760 * 1 2 3 28 28 H 1.09006 * 109.47331 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47220 * 299.99816 * 1 2 3 30 30 H 1.08004 * 120.28834 * 359.97438 * 4 3 2 31 31 H 1.07999 * 120.44455 * 359.94841 * 6 5 4 32 32 H 0.97002 * 120.00225 * 180.02562 * 10 9 8 33 33 H 1.08995 * 109.47534 * 300.00347 * 11 10 9 34 34 H 1.09000 * 109.47275 * 60.00554 * 11 10 9 35 35 H 1.08992 * 109.47578 * 300.00087 * 12 11 10 36 36 H 1.08996 * 109.46875 * 60.00658 * 12 11 10 37 37 H 1.08995 * 109.47470 * 300.00489 * 13 12 11 38 38 H 1.09004 * 109.47069 * 60.00089 * 13 12 11 39 39 H 0.96995 * 120.00450 * 180.02562 * 17 16 14 40 40 H 1.08002 * 120.27632 * 359.96822 * 23 22 9 41 41 H 1.08994 * 109.47063 * 300.00620 * 26 25 24 42 42 H 1.09001 * 109.46673 * 60.00544 * 26 25 24 43 43 H 1.09001 * 109.47154 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2925 2.3514 0.0005 5 6 1.9309 3.5975 0.0011 6 6 1.2220 4.8135 0.0022 7 7 1.8913 5.9430 0.0031 8 7 3.1706 6.0069 0.0036 9 6 3.9493 4.9395 0.0027 10 7 5.3289 5.0722 0.0028 11 6 5.9364 6.4053 0.0044 12 6 7.4606 6.2711 0.0048 13 6 8.0951 7.6633 0.0059 14 6 9.5963 7.5312 0.0068 15 1 10.0522 6.5521 0.0063 16 6 10.3877 8.6602 0.0085 17 7 9.8326 9.8524 0.0096 18 14 12.2485 8.4964 0.0090 19 1 12.6807 7.7571 -1.2042 20 1 12.8644 9.8477 0.0114 21 1 12.6798 7.7543 1.2208 22 6 3.3495 3.6599 0.0006 23 6 4.0954 2.4768 0.0000 24 6 3.4467 1.2734 0.0038 25 8 4.1693 0.1222 0.0083 26 6 5.5927 0.2496 0.0146 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.2141 2.2920 0.0005 31 1 0.1420 4.8174 0.0018 32 1 5.8922 4.2825 0.0017 33 1 5.6195 6.9502 -0.8847 34 1 5.6197 6.9478 0.8952 35 1 7.7772 5.7264 0.8942 36 1 7.7777 5.7285 -0.8857 37 1 7.7785 8.2077 -0.8838 38 1 7.7780 8.2065 0.8962 39 1 10.3894 10.6467 0.0104 40 1 5.1748 2.5136 0.0007 41 1 5.9128 0.7929 -0.8744 42 1 5.9047 0.7947 0.9055 43 1 6.0462 -0.7416 0.0182 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168427936.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:45 Heat of formation + Delta-G solvation = -4.411196 kcal Electronic energy + Delta-G solvation = -25491.243634 eV Core-core repulsion = 21730.592287 eV Total energy + Delta-G solvation = -3760.651347 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.67596 -40.10503 -39.01074 -36.84517 -36.45317 -34.00577 -32.34853 -31.37600 -30.59458 -29.61034 -28.20981 -27.68557 -26.51206 -24.28578 -23.91369 -22.81584 -21.91643 -20.52130 -19.25500 -19.03066 -17.76480 -17.01237 -16.71673 -16.58616 -16.24528 -15.90967 -15.69592 -15.32474 -15.28721 -14.99523 -14.54223 -14.36918 -14.29792 -13.56611 -13.34812 -12.93111 -12.63982 -12.31377 -12.28584 -12.05948 -11.91934 -11.81001 -11.67545 -11.33783 -11.05093 -10.85893 -10.74396 -10.73878 -10.60197 -9.86503 -9.52215 -9.37581 -9.17917 -9.16179 -8.55060 -8.38578 -7.62672 -6.03065 -4.06559 0.23861 0.56694 1.72265 2.70936 2.74122 2.79436 3.11424 3.30495 3.35625 3.37246 3.92551 4.09655 4.20030 4.36978 4.42860 4.58291 4.60908 4.71589 4.72591 4.78331 4.83504 4.88228 5.06751 5.08014 5.17726 5.23657 5.32479 5.41066 5.55067 5.64736 5.75369 5.82721 5.99210 6.12637 6.18405 6.54555 6.56123 6.62113 6.92047 7.04204 7.14786 7.48709 7.61394 7.74068 7.95198 8.35804 8.99662 9.19259 9.57545 11.08085 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019055 B = 0.002544 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.098698 B =11002.805867 C =12435.546348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.303 6.303 3 C 0.140 3.860 4 C -0.174 4.174 5 C -0.030 4.030 6 C 0.001 3.999 7 N -0.209 5.209 8 N -0.337 5.337 9 C 0.382 3.618 10 N -0.695 5.695 11 C 0.123 3.877 12 C -0.122 4.122 13 C 0.025 3.975 14 C -0.524 4.524 15 H 0.054 0.946 16 C 0.057 3.943 17 N -0.892 5.892 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.111 4.111 23 C -0.150 4.150 24 C 0.116 3.884 25 O -0.304 6.304 26 C 0.020 3.980 27 H 0.059 0.941 28 H 0.103 0.897 29 H 0.059 0.941 30 H 0.150 0.850 31 H 0.168 0.832 32 H 0.404 0.596 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.262 0.738 40 H 0.144 0.856 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.785 -22.315 -0.011 29.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.215 6.215 3 C 0.093 3.907 4 C -0.196 4.196 5 C -0.038 4.038 6 C -0.180 4.180 7 N -0.041 5.041 8 N -0.185 5.185 9 C 0.131 3.869 10 N -0.326 5.326 11 C 0.001 3.999 12 C -0.160 4.160 13 C -0.012 4.012 14 C -0.562 4.562 15 H 0.072 0.928 16 C -0.144 4.144 17 N -0.531 5.531 18 Si 0.721 3.279 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.203 1.203 22 C -0.122 4.122 23 C -0.171 4.171 24 C 0.069 3.931 25 O -0.217 6.217 26 C -0.074 4.074 27 H 0.078 0.922 28 H 0.122 0.878 29 H 0.078 0.922 30 H 0.168 0.832 31 H 0.185 0.815 32 H 0.241 0.759 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.072 0.928 40 H 0.161 0.839 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -18.637 -20.585 -0.008 27.768 hybrid contribution 1.333 -1.641 -0.002 2.114 sum -17.303 -22.226 -0.010 28.168 Atomic orbital electron populations 1.23178 0.77953 1.04444 1.01713 1.86181 1.21562 1.25702 1.88083 1.18085 0.89037 0.85393 0.98194 1.20735 1.00329 0.89971 1.08533 1.18346 0.91944 0.94953 0.98532 1.24042 1.01311 0.88070 1.04535 1.72153 1.00807 1.25367 1.05768 1.72673 0.98377 1.24335 1.23115 1.20173 0.87638 0.89670 0.89431 1.44820 1.00897 1.10512 1.76350 1.21759 0.94252 0.81385 1.02529 1.21914 0.90794 1.02555 1.00757 1.19010 0.94994 0.89428 0.97792 1.21145 0.91431 0.92415 1.51252 0.92774 1.25025 0.98754 0.95386 0.95256 1.69948 1.35448 0.97430 1.50294 0.86647 0.85555 0.77154 0.78555 1.20260 1.21236 1.20268 1.18104 0.93625 0.93051 1.07378 1.20608 1.00276 0.90180 1.06042 1.17935 0.88425 0.85945 1.00808 1.86172 1.19514 1.27495 1.88479 1.23200 0.77904 1.04552 1.01794 0.92221 0.87832 0.92213 0.83214 0.81534 0.75887 0.91302 0.91309 0.92794 0.92800 0.96157 0.96160 0.92823 0.83868 0.92202 0.92210 0.87668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.80 101.05 0.99 1.10 16 2 O -0.30 -2.85 10.24 -34.51 -0.35 -3.20 16 3 C 0.14 1.44 6.67 -39.39 -0.26 1.18 16 4 C -0.17 -1.61 8.79 -39.47 -0.35 -1.96 16 5 C -0.03 -0.36 5.75 -106.84 -0.61 -0.97 16 6 C 0.00 0.01 11.20 -16.83 -0.19 -0.17 16 7 N -0.21 -3.38 11.39 30.89 0.35 -3.03 16 8 N -0.34 -5.95 10.68 31.46 0.34 -5.61 16 9 C 0.38 5.89 7.61 -154.81 -1.18 4.72 16 10 N -0.69 -10.10 5.65 -59.98 -0.34 -10.44 16 11 C 0.12 2.13 5.73 -4.04 -0.02 2.11 16 12 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 13 C 0.03 0.64 4.97 -27.88 -0.14 0.50 16 14 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 15 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 18 Si 0.89 21.39 29.54 -169.99 -5.02 16.36 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 C -0.11 -1.46 5.76 -106.68 -0.61 -2.07 16 23 C -0.15 -1.64 8.51 -39.53 -0.34 -1.98 16 24 C 0.12 1.28 6.67 -39.39 -0.26 1.01 16 25 O -0.30 -3.15 10.24 -34.60 -0.35 -3.51 16 26 C 0.02 0.14 9.80 101.05 0.99 1.13 16 27 H 0.06 0.22 7.63 -51.93 -0.40 -0.17 16 28 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.22 7.63 -51.93 -0.40 -0.17 16 30 H 0.15 0.88 6.20 -52.48 -0.33 0.56 16 31 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.40 4.79 6.76 -40.82 -0.28 4.51 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 34 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.14 1.27 4.76 -52.49 -0.25 1.02 16 41 H 0.06 0.36 7.62 -51.93 -0.40 -0.03 16 42 H 0.06 0.36 7.64 -51.93 -0.40 -0.03 16 43 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 360.91 15.07 5.44 5.44 Total: -1.00 -34.45 360.91 -7.52 -41.97 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -5.78 Total: -0.84 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -2.54 Total: -11.20 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 1.09 Total: -45.03 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: -0.71 Total: -6.71 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.45 -7.52 -41.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427936.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.561 kcal (2) G-P(sol) polarization free energy of solvation -34.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds