Wall clock time and date at job start Tue Mar 31 2020 11:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35895 * 117.00245 * 2 1 4 4 C 1.36698 * 119.55244 * 0.02562 * 3 2 1 5 5 C 1.40009 * 119.42819 * 179.97438 * 4 3 2 6 6 C 1.40758 * 122.63252 * 180.02562 * 5 4 3 7 7 N 1.31284 * 119.10723 * 179.97438 * 6 5 4 8 8 N 1.28083 * 123.51176 * 359.97438 * 7 6 5 9 9 C 1.32130 * 123.25439 * 0.02562 * 8 7 6 10 10 N 1.38596 * 120.61776 * 179.97438 * 9 8 7 11 11 C 1.46497 * 119.99724 * 0.02562 * 10 9 8 12 12 C 1.53003 * 109.46983 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.47182 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47305 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99738 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99965 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00416 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99978 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47117 * 59.99881 * 18 16 14 20 20 H 1.48498 * 109.47120 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46974 * 299.99909 * 18 16 14 22 22 C 1.41318 * 118.77081 * 0.02562 * 9 8 7 23 23 C 1.39856 * 122.65558 * 180.02562 * 22 9 8 24 24 C 1.36708 * 119.44575 * 179.71528 * 23 22 9 25 25 O 1.35923 * 119.56087 * 180.24497 * 24 23 22 26 26 C 1.42909 * 116.99995 * 0.26178 * 25 24 23 27 27 H 1.08996 * 109.47672 * 59.99760 * 1 2 3 28 28 H 1.09006 * 109.47331 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47220 * 299.99816 * 1 2 3 30 30 H 1.08004 * 120.28834 * 359.97438 * 4 3 2 31 31 H 1.07999 * 120.44455 * 359.94841 * 6 5 4 32 32 H 0.97002 * 120.00225 * 180.02562 * 10 9 8 33 33 H 1.08995 * 109.47534 * 300.00347 * 11 10 9 34 34 H 1.09000 * 109.47275 * 60.00554 * 11 10 9 35 35 H 1.08992 * 109.47578 * 300.00087 * 12 11 10 36 36 H 1.08996 * 109.46875 * 60.00658 * 12 11 10 37 37 H 1.08995 * 109.47470 * 300.00489 * 13 12 11 38 38 H 1.09004 * 109.47069 * 60.00089 * 13 12 11 39 39 H 0.96995 * 120.00450 * 180.02562 * 17 16 14 40 40 H 1.08002 * 120.27632 * 359.96822 * 23 22 9 41 41 H 1.08994 * 109.47063 * 300.00620 * 26 25 24 42 42 H 1.09001 * 109.46673 * 60.00544 * 26 25 24 43 43 H 1.09001 * 109.47154 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2925 2.3514 0.0005 5 6 1.9309 3.5975 0.0011 6 6 1.2220 4.8135 0.0022 7 7 1.8913 5.9430 0.0031 8 7 3.1706 6.0069 0.0036 9 6 3.9493 4.9395 0.0027 10 7 5.3289 5.0722 0.0028 11 6 5.9364 6.4053 0.0044 12 6 7.4606 6.2711 0.0048 13 6 8.0951 7.6633 0.0059 14 6 9.5963 7.5312 0.0068 15 1 10.0522 6.5521 0.0063 16 6 10.3877 8.6602 0.0085 17 7 9.8326 9.8524 0.0096 18 14 12.2485 8.4964 0.0090 19 1 12.6807 7.7571 -1.2042 20 1 12.8644 9.8477 0.0114 21 1 12.6798 7.7543 1.2208 22 6 3.3495 3.6599 0.0006 23 6 4.0954 2.4768 0.0000 24 6 3.4467 1.2734 0.0038 25 8 4.1693 0.1222 0.0083 26 6 5.5927 0.2496 0.0146 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.2141 2.2920 0.0005 31 1 0.1420 4.8174 0.0018 32 1 5.8922 4.2825 0.0017 33 1 5.6195 6.9502 -0.8847 34 1 5.6197 6.9478 0.8952 35 1 7.7772 5.7264 0.8942 36 1 7.7777 5.7285 -0.8857 37 1 7.7785 8.2077 -0.8838 38 1 7.7780 8.2065 0.8962 39 1 10.3894 10.6467 0.0104 40 1 5.1748 2.5136 0.0007 41 1 5.9128 0.7929 -0.8744 42 1 5.9047 0.7947 0.9055 43 1 6.0462 -0.7416 0.0182 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168427936.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:44 Heat of formation + Delta-G solvation = -26.897491 kcal Electronic energy + Delta-G solvation = -25492.218713 eV Core-core repulsion = 21730.592287 eV Total energy + Delta-G solvation = -3761.626426 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.56016 -40.95914 -39.68083 -38.10542 -37.30668 -35.76931 -33.96518 -32.40865 -31.68070 -30.70178 -28.93885 -28.20451 -28.10762 -25.42809 -25.07053 -24.10414 -22.82173 -22.20609 -20.09069 -19.89040 -18.72919 -18.47675 -17.87750 -17.54254 -17.25907 -16.69492 -16.58666 -16.51949 -16.25134 -16.06866 -15.80732 -15.71355 -15.36046 -14.42414 -14.25051 -14.05425 -13.92155 -13.74380 -13.54271 -13.31475 -12.80953 -12.69306 -12.54179 -12.43894 -12.38084 -12.32232 -12.14547 -12.02887 -11.83998 -11.53046 -11.45618 -11.20596 -10.54980 -10.43704 -10.13412 -9.33083 -8.71110 -8.19262 -6.31053 -0.61135 -0.35726 0.79311 1.41045 1.44181 1.52041 1.87336 1.97755 2.10966 2.15379 2.41942 2.92995 3.14186 3.21795 3.36446 3.49615 3.75680 3.88798 3.97499 4.14044 4.20312 4.21893 4.31008 4.35650 4.39228 4.45119 4.45487 4.54887 4.60091 4.69757 4.76093 4.82495 4.88532 4.94688 5.05016 5.15357 5.21234 5.31725 5.49884 5.70147 5.83701 5.89155 5.93474 6.22454 6.36478 6.45605 6.86024 7.38328 8.13750 8.92605 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019055 B = 0.002544 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.098698 B =11002.805867 C =12435.546348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.319 6.319 3 C 0.135 3.865 4 C -0.157 4.157 5 C -0.047 4.047 6 C 0.025 3.975 7 N -0.258 5.258 8 N -0.384 5.384 9 C 0.370 3.630 10 N -0.691 5.691 11 C 0.144 3.856 12 C -0.103 4.103 13 C 0.026 3.974 14 C -0.542 4.542 15 H 0.066 0.934 16 C -0.004 4.004 17 N -0.934 5.934 18 Si 0.967 3.033 19 H -0.265 1.265 20 H -0.286 1.286 21 H -0.265 1.265 22 C -0.121 4.121 23 C -0.156 4.156 24 C 0.116 3.884 25 O -0.317 6.317 26 C 0.010 3.990 27 H 0.074 0.926 28 H 0.121 0.879 29 H 0.074 0.926 30 H 0.188 0.812 31 H 0.208 0.792 32 H 0.417 0.583 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.067 0.933 36 H 0.067 0.933 37 H -0.008 1.008 38 H -0.008 1.008 39 H 0.263 0.737 40 H 0.159 0.841 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.373 -25.548 -0.013 32.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.232 6.232 3 C 0.087 3.913 4 C -0.178 4.178 5 C -0.054 4.054 6 C -0.157 4.157 7 N -0.088 5.088 8 N -0.230 5.230 9 C 0.118 3.882 10 N -0.326 5.326 11 C 0.020 3.980 12 C -0.140 4.140 13 C -0.012 4.012 14 C -0.580 4.580 15 H 0.084 0.916 16 C -0.202 4.202 17 N -0.574 5.574 18 Si 0.791 3.209 19 H -0.190 1.190 20 H -0.212 1.212 21 H -0.190 1.190 22 C -0.131 4.131 23 C -0.177 4.177 24 C 0.068 3.932 25 O -0.230 6.230 26 C -0.084 4.084 27 H 0.092 0.908 28 H 0.139 0.861 29 H 0.092 0.908 30 H 0.205 0.795 31 H 0.225 0.775 32 H 0.257 0.743 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.011 0.989 38 H 0.011 0.989 39 H 0.072 0.928 40 H 0.176 0.824 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -19.251 -23.845 -0.010 30.646 hybrid contribution 1.329 -0.852 -0.002 1.579 sum -17.922 -24.697 -0.012 30.514 Atomic orbital electron populations 1.23545 0.75589 1.06234 1.03096 1.86179 1.24049 1.25189 1.87765 1.18269 0.89101 0.86191 0.97766 1.21017 1.02014 0.88283 1.06462 1.18589 0.91619 0.95952 0.99259 1.24721 1.03013 0.87280 1.00724 1.72055 1.00481 1.27349 1.08865 1.72495 0.99525 1.26134 1.24830 1.20251 0.87454 0.90437 0.90087 1.44430 1.01034 1.09550 1.77537 1.21236 0.93061 0.82834 1.00902 1.21606 0.91517 0.98960 1.01958 1.18912 0.94815 0.92368 0.95119 1.21636 0.92671 0.93016 1.50638 0.91552 1.26033 1.04338 0.94987 0.94797 1.70104 1.37465 0.98337 1.51528 0.85471 0.78883 0.77244 0.79259 1.19004 1.21186 1.19015 1.18233 0.94574 0.92614 1.07717 1.20693 1.01070 0.89508 1.06383 1.18189 0.89181 0.86067 0.99786 1.86167 1.21227 1.27390 1.88179 1.23486 0.76244 1.06152 1.02520 0.90760 0.86091 0.90755 0.79520 0.77512 0.74343 0.93080 0.93088 0.91463 0.91472 0.98926 0.98934 0.92802 0.82354 0.91458 0.91477 0.85709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.80 113.37 1.11 1.17 16 2 O -0.32 -5.09 10.24 -77.92 -0.80 -5.89 16 3 C 0.13 2.42 6.67 22.39 0.15 2.57 16 4 C -0.16 -2.41 8.79 22.34 0.20 -2.21 16 5 C -0.05 -1.03 5.75 -21.30 -0.12 -1.15 16 6 C 0.02 0.57 11.20 85.39 0.96 1.53 16 7 N -0.26 -8.46 11.39 -56.19 -0.64 -9.10 16 8 N -0.38 -14.11 10.68 -54.37 -0.58 -14.69 16 9 C 0.37 11.63 7.61 133.82 1.02 12.65 16 10 N -0.69 -20.42 5.65 -343.68 -1.94 -22.37 16 11 C 0.14 5.20 5.73 86.38 0.50 5.69 16 12 C -0.10 -3.98 5.27 30.60 0.16 -3.82 16 13 C 0.03 1.34 4.97 29.85 0.15 1.49 16 14 C -0.54 -30.30 9.11 25.60 0.23 -30.07 16 15 H 0.07 3.47 7.74 -2.91 -0.02 3.44 16 16 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 17 N -0.93 -57.44 13.29 21.45 0.28 -57.15 16 18 Si 0.97 43.87 29.54 68.60 2.03 45.90 16 19 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 20 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 21 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 22 C -0.12 -3.10 5.76 -21.20 -0.12 -3.23 16 23 C -0.16 -3.21 8.51 22.30 0.19 -3.02 16 24 C 0.12 2.32 6.67 22.39 0.15 2.47 16 25 O -0.32 -5.96 10.24 -78.24 -0.80 -6.77 16 26 C 0.01 0.12 9.80 113.37 1.11 1.23 16 27 H 0.07 0.25 7.63 -2.39 -0.02 0.23 16 28 H 0.12 0.31 8.14 -2.38 -0.02 0.29 16 29 H 0.07 0.25 7.63 -2.39 -0.02 0.23 16 30 H 0.19 1.32 6.20 -2.91 -0.02 1.30 16 31 H 0.21 2.77 8.06 -2.91 -0.02 2.74 16 32 H 0.42 9.66 6.76 -92.71 -0.63 9.03 16 33 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 37 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 38 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 39 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 40 H 0.16 2.58 4.76 -2.91 -0.01 2.57 16 41 H 0.07 0.68 7.62 -2.39 -0.02 0.66 16 42 H 0.07 0.68 7.64 -2.39 -0.02 0.66 16 43 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -77.85 360.91 4.10 -73.75 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 0.42 Total: 10.79 kcal Atomic # 6 Polarization: -20.60 SS G_CDS: 6.14 Total: -14.46 kcal Atomic # 7 Polarization: -100.43 SS G_CDS: -2.88 Total: -103.31 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: -1.60 Total: -12.65 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -77.85 4.10 -73.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427936.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.848 kcal (2) G-P(sol) polarization free energy of solvation -77.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds