Wall clock time and date at job start Tue Mar 31 2020 11:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35937 * 117.00044 * 2 1 4 4 C 1.39579 * 119.64119 * 359.97438 * 3 2 1 5 5 C 1.36295 * 120.89526 * 180.02562 * 4 3 2 6 6 C 1.39998 * 119.80330 * 359.97438 * 5 4 3 7 7 C 1.41554 * 121.97769 * 180.02562 * 6 5 4 8 8 N 1.37915 * 120.89454 * 0.02562 * 7 6 5 9 9 C 1.46499 * 120.00251 * 180.02562 * 8 7 6 10 10 C 1.53008 * 109.46950 * 179.97438 * 9 8 7 11 11 C 1.53004 * 109.46940 * 180.02562 * 10 9 8 12 12 C 1.50692 * 109.46871 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00233 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99769 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00100 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00029 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46939 * 90.00282 * 16 14 12 18 18 H 1.48502 * 109.47318 * 209.99799 * 16 14 12 19 19 H 1.48492 * 109.47277 * 330.00103 * 16 14 12 20 20 N 1.32634 * 118.21749 * 179.97438 * 7 6 5 21 21 C 1.32398 * 121.51189 * 359.97438 * 20 7 6 22 22 N 1.31144 * 122.93454 * 0.02562 * 21 20 7 23 23 C 1.34205 * 120.45486 * 359.96048 * 22 21 20 24 24 C 1.38250 * 119.64707 * 179.97438 * 3 2 1 25 25 O 1.36019 * 120.31851 * 0.02562 * 24 3 2 26 26 C 1.42904 * 117.00156 * 90.00099 * 25 24 3 27 27 H 1.08998 * 109.46736 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47252 * 300.00332 * 1 2 3 29 29 H 1.09002 * 109.46743 * 60.00672 * 1 2 3 30 30 H 1.08004 * 119.55496 * 359.97438 * 4 3 2 31 31 H 1.07995 * 120.09739 * 179.70252 * 5 4 3 32 32 H 0.97000 * 119.99780 * 0.02562 * 8 7 6 33 33 H 1.08997 * 109.47409 * 300.00074 * 9 8 7 34 34 H 1.08994 * 109.47009 * 60.00463 * 9 8 7 35 35 H 1.08997 * 109.47165 * 300.00272 * 10 9 8 36 36 H 1.09002 * 109.46701 * 60.00691 * 10 9 8 37 37 H 1.09007 * 109.46619 * 300.00285 * 11 10 9 38 38 H 1.08998 * 109.47026 * 59.99981 * 11 10 9 39 39 H 0.97003 * 120.00228 * 180.02562 * 15 14 12 40 40 H 1.07997 * 118.53014 * 180.02562 * 21 20 7 41 41 H 1.08999 * 109.47114 * 179.97438 * 26 25 24 42 42 H 1.09000 * 109.46506 * 299.99882 * 26 25 24 43 43 H 1.08994 * 109.47007 * 60.00036 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 1.2786 2.3770 -0.0005 5 6 1.8707 3.6047 -0.0011 6 6 3.2671 3.7037 -0.0005 7 6 3.9299 4.9545 -0.0005 8 7 3.2158 6.1344 -0.0005 9 6 3.9219 7.4180 -0.0011 10 6 2.9037 8.5601 -0.0016 11 6 3.6411 9.9007 -0.0028 12 6 2.6383 11.0255 -0.0027 13 1 1.5808 10.8062 -0.0022 14 6 3.0708 12.3346 -0.0031 15 7 4.3586 12.6017 -0.0042 16 14 1.8278 13.7290 -0.0037 17 1 1.4984 14.0990 1.3963 18 1 2.4035 14.9052 -0.7041 19 1 0.5934 13.2915 -0.7035 20 7 5.2563 4.9614 0.0005 21 6 5.9541 3.8362 0.0020 22 7 5.3946 2.6501 0.0021 23 6 4.0580 2.5286 0.0014 24 6 3.4271 1.2750 0.0005 25 8 4.1673 0.1338 0.0005 26 6 4.5208 -0.4102 -1.2727 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 0.2009 2.3054 -0.0014 31 1 1.2643 4.4983 -0.0063 32 1 2.2460 6.1143 -0.0001 33 1 4.5476 7.4889 0.8886 34 1 4.5468 7.4885 -0.8913 35 1 2.2783 8.4889 -0.8915 36 1 2.2784 8.4897 0.8885 37 1 4.2667 9.9719 0.8870 38 1 4.2661 9.9707 -0.8930 39 1 4.6629 13.5228 -0.0041 40 1 7.0323 3.8980 0.0033 41 1 5.1091 -1.3166 -1.1299 42 1 3.6149 -0.6486 -1.8301 43 1 5.1083 0.3199 -1.8293 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168428196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:07 Heat of formation + Delta-G solvation = -33.576936 kcal Electronic energy + Delta-G solvation = -25460.903197 eV Core-core repulsion = 21698.987128 eV Total energy + Delta-G solvation = -3761.916069 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.48376 -40.73840 -39.09879 -38.07479 -37.27455 -35.80053 -34.12766 -32.72920 -31.37494 -30.92144 -28.55821 -28.18136 -27.66310 -25.54263 -25.18279 -24.13274 -22.67561 -22.17337 -20.30547 -19.50971 -18.73215 -18.50928 -17.80357 -17.51386 -17.20177 -16.98450 -16.54831 -16.50306 -16.07727 -15.68564 -15.55432 -15.44994 -15.32137 -14.60387 -14.28519 -14.03737 -13.96091 -13.82351 -13.67584 -13.20978 -12.86024 -12.71390 -12.54969 -12.42014 -12.36918 -12.32857 -12.04519 -11.64903 -11.57864 -11.48344 -11.19251 -11.04815 -10.54282 -10.41228 -10.09501 -9.41613 -8.80022 -8.18767 -6.29757 -0.67113 -0.28821 0.81639 1.42442 1.43192 1.53960 1.83422 1.89763 2.09451 2.42567 2.68962 3.06986 3.15352 3.27917 3.41086 3.51664 3.72184 3.82233 3.95975 4.16968 4.24609 4.31531 4.37365 4.42161 4.43576 4.49004 4.57301 4.64960 4.75171 4.77601 4.86482 4.96994 4.99115 5.01590 5.17066 5.18644 5.36764 5.52496 5.70746 5.72715 5.85770 5.97119 6.06892 6.23969 6.49997 6.64093 6.87969 7.35735 7.39833 8.93111 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022802 B = 0.002347 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.661285 B =11925.474184 C =13044.837123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.319 6.319 3 C 0.156 3.844 4 C -0.196 4.196 5 C -0.023 4.023 6 C -0.233 4.233 7 C 0.475 3.525 8 N -0.676 5.676 9 C 0.140 3.860 10 C -0.105 4.105 11 C 0.025 3.975 12 C -0.540 4.540 13 H 0.066 0.934 14 C -0.003 4.003 15 N -0.934 5.934 16 Si 0.964 3.036 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.260 1.260 20 N -0.626 5.626 21 C 0.352 3.648 22 N -0.576 5.576 23 C 0.184 3.816 24 C 0.019 3.981 25 O -0.328 6.328 26 C 0.039 3.961 27 H 0.121 0.879 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.179 0.821 31 H 0.166 0.834 32 H 0.423 0.577 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.067 0.933 37 H -0.007 1.007 38 H -0.006 1.006 39 H 0.263 0.737 40 H 0.217 0.783 41 H 0.110 0.890 42 H 0.048 0.952 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.597 -26.432 -1.881 28.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.231 6.231 3 C 0.106 3.894 4 C -0.215 4.215 5 C -0.043 4.043 6 C -0.241 4.241 7 C 0.220 3.780 8 N -0.308 5.308 9 C 0.017 3.983 10 C -0.143 4.143 11 C -0.012 4.012 12 C -0.578 4.578 13 H 0.084 0.916 14 C -0.201 4.201 15 N -0.574 5.574 16 Si 0.789 3.211 17 H -0.199 1.199 18 H -0.212 1.212 19 H -0.184 1.184 20 N -0.355 5.355 21 C 0.062 3.938 22 N -0.297 5.297 23 C 0.059 3.941 24 C -0.028 4.028 25 O -0.244 6.244 26 C -0.055 4.055 27 H 0.139 0.861 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.197 0.803 31 H 0.183 0.817 32 H 0.263 0.737 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.012 0.988 38 H 0.012 0.988 39 H 0.071 0.929 40 H 0.233 0.767 41 H 0.128 0.872 42 H 0.067 0.933 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -8.291 -26.486 -1.739 27.808 hybrid contribution -1.174 1.189 -0.181 1.681 sum -9.465 -25.297 -1.921 27.078 Atomic orbital electron populations 1.23548 0.75528 1.06187 1.03108 1.86169 1.24151 1.25540 1.87257 1.19485 0.90619 0.86212 0.93093 1.21237 1.02194 0.90110 1.07972 1.20952 0.91389 0.99458 0.92473 1.18919 0.96640 0.92745 1.15846 1.18801 0.89001 0.85889 0.84340 1.44650 1.09305 1.02333 1.74464 1.21333 0.94974 0.80483 1.01536 1.21630 0.97515 0.93015 1.02110 1.18914 0.95169 0.91936 0.95217 1.21679 0.93905 0.91878 1.50337 0.91595 1.25993 0.97105 1.02069 0.94895 1.70104 1.15488 1.20118 1.51713 0.85456 0.79088 0.78152 0.78402 1.19916 1.21162 1.18443 1.68063 1.06181 1.33450 1.27853 1.25122 1.01547 0.81260 0.85890 1.68812 1.09961 1.27662 1.23289 1.18859 0.90095 0.91872 0.93322 1.17424 0.87147 0.85060 1.13137 1.86059 1.70869 1.37199 1.30259 1.23046 0.99721 0.98726 0.84023 0.86114 0.90858 0.90662 0.80337 0.81668 0.73655 0.92436 0.92375 0.91373 0.91404 0.98830 0.98776 0.92851 0.76679 0.87188 0.93323 0.94618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.80 113.37 1.11 1.19 16 2 O -0.32 -5.81 10.25 -78.32 -0.80 -6.61 16 3 C 0.16 3.28 6.69 22.60 0.15 3.43 16 4 C -0.20 -2.98 8.94 22.14 0.20 -2.78 16 5 C -0.02 -0.39 9.52 22.24 0.21 -0.18 16 6 C -0.23 -5.98 5.76 -21.19 -0.12 -6.10 16 7 C 0.48 13.44 7.55 133.96 1.01 14.46 16 8 N -0.68 -17.17 5.62 -343.67 -1.93 -19.11 16 9 C 0.14 4.47 5.73 86.38 0.50 4.97 16 10 C -0.10 -3.74 5.27 30.60 0.16 -3.58 16 11 C 0.03 1.26 4.97 29.85 0.15 1.41 16 12 C -0.54 -29.21 9.11 25.60 0.23 -28.98 16 13 H 0.07 3.34 7.74 -2.91 -0.02 3.32 16 14 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 15 N -0.93 -55.97 13.29 21.45 0.28 -55.69 16 16 Si 0.96 42.89 29.54 68.60 2.03 44.92 16 17 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 18 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 19 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 20 N -0.63 -19.53 9.67 -196.76 -1.90 -21.43 16 21 C 0.35 10.04 12.22 180.90 2.21 12.25 16 22 N -0.58 -17.80 10.27 -193.71 -1.99 -19.78 16 23 C 0.18 5.44 6.62 40.13 0.27 5.70 16 24 C 0.02 0.53 5.78 22.78 0.13 0.66 16 25 O -0.33 -9.31 10.02 -79.25 -0.79 -10.11 16 26 C 0.04 0.82 11.13 113.37 1.26 2.08 16 27 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.07 0.37 7.64 -2.39 -0.02 0.35 16 29 H 0.07 0.33 7.64 -2.39 -0.02 0.31 16 30 H 0.18 1.24 6.22 -2.91 -0.02 1.23 16 31 H 0.17 1.75 6.56 -2.91 -0.02 1.73 16 32 H 0.42 7.96 6.71 -92.71 -0.62 7.34 16 33 H 0.06 1.99 8.14 -2.39 -0.02 1.98 16 34 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 37 H -0.01 -0.37 8.14 -2.38 -0.02 -0.38 16 38 H -0.01 -0.34 8.14 -2.39 -0.02 -0.35 16 39 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 40 H 0.22 4.66 8.06 -2.91 -0.02 4.63 16 41 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -74.84 364.81 3.24 -71.61 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 0.41 Total: 11.37 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: 7.93 Total: 4.83 kcal Atomic # 7 Polarization: -110.47 SS G_CDS: -5.54 Total: -116.01 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -1.60 Total: -16.72 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -74.84 3.24 -71.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168428196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.029 kcal (2) G-P(sol) polarization free energy of solvation -74.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds