Wall clock time and date at job start Tue Mar 31 2020 11:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34231 * 116.99859 * 2 1 4 4 O 1.20828 * 120.00273 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00162 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.62557 * 300.38890 * 5 3 2 7 7 C 1.50476 * 109.62665 * 60.96548 * 5 3 2 8 8 C 1.54070 * 112.49821 * 213.85864 * 7 5 3 9 9 C 1.54065 * 112.81967 * 318.28132 * 8 7 5 10 10 C 1.50473 * 112.49313 * 318.28872 * 9 8 7 11 11 H 1.09002 * 109.63446 * 334.24482 * 10 9 8 12 12 N 1.46507 * 109.62762 * 213.85946 * 10 9 8 13 13 C 1.38227 * 119.99749 * 86.62590 * 12 10 9 14 14 C 1.38995 * 120.00126 * 5.27613 * 13 12 10 15 15 H 1.07993 * 120.00054 * 317.75774 * 14 13 12 16 16 C 1.40824 * 119.99444 * 137.75658 * 14 13 12 17 17 N 1.30335 * 120.00235 * 341.40676 * 16 14 13 18 18 Si 1.86798 * 119.99691 * 161.40884 * 16 14 13 19 19 H 1.48500 * 109.47125 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47163 * 119.99942 * 18 16 14 21 21 H 1.48493 * 109.47248 * 239.99790 * 18 16 14 22 22 C 1.41157 * 119.99894 * 185.28464 * 13 12 10 23 23 C 1.43192 * 120.00005 * 174.28800 * 22 13 12 24 24 N 8.83824 * 159.34063 * 65.32487 * 5 1 2 25 25 C 1.43196 * 119.99887 * 354.28660 * 22 13 12 26 26 N 9.14497 * 167.38058 * 323.35440 * 3 1 2 27 27 C 1.54236 * 108.51524 * 94.15674 * 10 9 8 28 28 C 1.45545 * 112.40645 * 279.99587 * 27 10 9 29 29 H 1.08998 * 109.47612 * 60.00028 * 1 2 3 30 30 H 1.09000 * 109.46987 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47358 * 299.99706 * 1 2 3 32 32 H 1.08996 * 108.87796 * 334.63900 * 7 5 3 33 33 H 1.09003 * 108.87400 * 93.17970 * 7 5 3 34 34 H 1.09003 * 108.81102 * 197.42431 * 8 7 5 35 35 H 1.09000 * 108.81632 * 79.14750 * 8 7 5 36 36 H 1.08999 * 108.87858 * 197.51088 * 9 8 7 37 37 H 1.08997 * 108.87280 * 79.06284 * 9 8 7 38 38 H 0.97000 * 119.99839 * 266.62466 * 12 10 9 39 39 H 0.97004 * 120.00119 * 185.07782 * 17 16 14 40 40 H 1.08996 * 108.89834 * 40.75058 * 27 10 9 41 41 H 1.08998 * 108.89468 * 159.34036 * 27 10 9 42 42 H 1.09007 * 108.89626 * 182.69366 * 28 27 10 43 43 H 1.08998 * 108.89577 * 301.28107 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2750 -0.0006 6 1 3.9594 0.7753 0.8848 7 6 4.1065 0.6148 -1.2401 8 6 5.4565 -0.0857 -0.9943 9 6 6.4076 0.7433 -0.1101 10 6 6.3939 2.2058 -0.4636 11 1 6.0997 2.3279 -1.5061 12 7 7.7288 2.7740 -0.2593 13 6 8.6696 2.7091 -1.2699 14 6 8.3172 2.2044 -2.5161 15 1 7.6969 1.3232 -2.5861 16 6 8.7691 2.8424 -3.6874 17 7 9.1953 4.0731 -3.6362 18 14 8.7577 1.9249 -5.3145 19 1 8.2303 0.5525 -5.1051 20 1 7.8920 2.6449 -6.2827 21 1 10.1408 1.8480 -5.8492 22 6 9.9883 3.1551 -1.0362 23 6 10.9933 2.9759 -2.0404 24 7 11.7916 2.8319 -2.8348 25 6 10.3211 3.7868 0.2051 26 7 10.5846 4.2882 1.1925 27 6 5.3804 2.9217 0.4524 28 6 4.0075 2.7528 -0.0004 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 3.3847 -0.1234 -1.5897 33 1 4.2391 1.3715 -2.0134 34 1 5.9385 -0.2671 -1.9550 35 1 5.2720 -1.0444 -0.5095 36 1 7.4216 0.3614 -0.2282 37 1 6.1090 0.6295 0.9320 38 1 7.9523 3.1958 0.5852 39 1 9.4370 4.5370 -4.4531 40 1 5.4712 2.5197 1.4615 41 1 5.6149 3.9859 0.4745 42 1 3.3469 3.3184 0.6568 43 1 3.9189 3.1464 -1.0130 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172794557.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:51 Heat of formation + Delta-G solvation = -46.535735 kcal Electronic energy + Delta-G solvation = -26613.242111 eV Core-core repulsion = 22850.764106 eV Total energy + Delta-G solvation = -3762.478004 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.94522 -39.08278 -37.01020 -36.48208 -34.77042 -34.61560 -33.42160 -32.45580 -31.60480 -28.94938 -27.82085 -26.79076 -25.31228 -24.15908 -21.97854 -21.09354 -20.40746 -19.49953 -18.27782 -17.71102 -17.32632 -16.94114 -16.46104 -15.97245 -15.45650 -15.02432 -14.79041 -14.40202 -13.97138 -13.59445 -13.44958 -13.21017 -13.03081 -12.83772 -12.37792 -12.33703 -12.28390 -12.13862 -11.92490 -11.80871 -11.60170 -11.48716 -11.26404 -11.10844 -11.03086 -11.01160 -10.80671 -10.69683 -10.67808 -10.64507 -10.51743 -10.33656 -10.09631 -10.00993 -9.61148 -8.98633 -7.15885 -6.49143 -5.11487 2.04396 2.50997 2.68987 2.99540 3.04278 3.18186 3.74844 4.01922 4.07128 4.30041 4.41316 4.54275 4.60726 4.63584 4.75215 4.83685 4.90654 5.04023 5.08830 5.21325 5.24701 5.27500 5.36851 5.41319 5.54576 5.70041 5.83369 5.85780 5.94420 5.99344 6.04448 6.11414 6.12828 6.24775 6.28448 6.36645 6.46231 6.60454 6.71250 6.77712 7.20608 7.43677 7.57551 7.86490 8.25370 8.52547 8.72090 9.13165 9.54876 9.81108 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015619 B = 0.003817 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.240467 B = 7333.112900 C = 8427.017725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.465 3.535 4 O -0.508 6.508 5 C -0.077 4.077 6 H 0.113 0.887 7 C -0.116 4.116 8 C -0.110 4.110 9 C -0.138 4.138 10 C 0.155 3.845 11 H 0.098 0.902 12 N -0.733 5.733 13 C 0.443 3.557 14 C -0.480 4.480 15 H 0.100 0.900 16 C 0.097 3.903 17 N -0.738 5.738 18 Si 0.905 3.095 19 H -0.255 1.255 20 H -0.271 1.271 21 H -0.263 1.263 22 C -0.297 4.297 23 C 0.355 3.645 24 N -0.548 5.548 25 C 0.305 3.695 26 N -0.549 5.549 27 C -0.128 4.128 28 C -0.098 4.098 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.056 0.944 38 H 0.386 0.614 39 H 0.293 0.707 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.522 -9.074 2.916 20.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.309 3.691 4 O -0.395 6.395 5 C -0.096 4.096 6 H 0.131 0.869 7 C -0.154 4.154 8 C -0.148 4.148 9 C -0.177 4.177 10 C 0.049 3.951 11 H 0.116 0.884 12 N -0.359 5.359 13 C 0.329 3.671 14 C -0.512 4.512 15 H 0.118 0.882 16 C -0.132 4.132 17 N -0.358 5.358 18 Si 0.728 3.272 19 H -0.178 1.178 20 H -0.196 1.196 21 H -0.187 1.187 22 C -0.317 4.317 23 C 0.047 3.953 24 N -0.231 5.231 25 C 0.000 4.000 26 N -0.233 5.233 27 C -0.166 4.166 28 C -0.136 4.136 29 H 0.081 0.919 30 H 0.118 0.882 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.074 0.926 38 H 0.220 0.780 39 H 0.105 0.895 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.147 -8.111 3.060 19.214 hybrid contribution -0.599 -0.138 -0.511 0.799 sum -17.746 -8.249 2.549 19.735 Atomic orbital electron populations 1.23249 0.76629 1.03577 1.02486 1.86518 1.23170 1.33700 1.84131 1.23991 0.92321 0.81109 0.71719 1.90657 1.67287 1.36376 1.45174 1.20937 0.85973 0.99958 1.02694 0.86942 1.21396 0.97667 1.00551 0.95787 1.21823 0.93808 0.98114 1.01029 1.21984 1.00576 0.96015 0.99109 1.20557 0.82462 0.91154 1.00910 0.88432 1.45144 1.10919 1.62579 1.17221 1.16981 0.84007 0.81207 0.84933 1.19090 1.30178 1.13104 0.88801 0.88242 1.25878 0.91187 0.94423 1.01685 1.69494 1.24747 1.09576 1.32005 0.86265 0.79794 0.80850 0.80281 1.17840 1.19609 1.18718 1.12540 0.90535 1.38016 0.90618 1.24291 0.90420 0.89875 0.90718 1.80917 1.12921 1.17303 1.11916 1.25587 0.92272 0.90211 0.91947 1.81155 1.08852 1.19043 1.14240 1.20750 0.94169 1.02145 0.99499 1.20342 0.96657 0.92800 1.03819 0.91939 0.88192 0.92013 0.91262 0.90551 0.91002 0.92110 0.90553 0.92575 0.78031 0.89548 0.91899 0.90604 0.90670 0.90761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.31 16 2 O -0.36 -3.53 10.11 -39.26 -0.40 -3.92 16 3 C 0.47 5.16 7.12 36.01 0.26 5.41 16 4 O -0.51 -6.93 15.35 -18.75 -0.29 -7.22 16 5 C -0.08 -0.74 2.30 -92.39 -0.21 -0.95 16 6 H 0.11 0.97 7.00 -51.93 -0.36 0.60 16 7 C -0.12 -1.11 4.87 -27.43 -0.13 -1.24 16 8 C -0.11 -1.09 5.86 -25.62 -0.15 -1.24 16 9 C -0.14 -1.61 4.88 -27.44 -0.13 -1.74 16 10 C 0.15 2.06 1.88 -68.54 -0.13 1.94 16 11 H 0.10 1.42 5.74 -51.93 -0.30 1.12 16 12 N -0.73 -12.36 5.00 -52.51 -0.26 -12.62 16 13 C 0.44 9.11 6.13 -83.59 -0.51 8.60 16 14 C -0.48 -9.85 7.20 -38.32 -0.28 -10.12 16 15 H 0.10 1.86 7.26 -52.49 -0.38 1.47 16 16 C 0.10 2.10 4.06 -17.21 -0.07 2.03 16 17 N -0.74 -17.13 11.16 55.59 0.62 -16.51 16 18 Si 0.91 17.19 29.61 -169.99 -5.03 12.15 16 19 H -0.26 -4.59 7.11 56.52 0.40 -4.19 16 20 H -0.27 -4.95 7.11 56.52 0.40 -4.54 16 21 H -0.26 -5.45 7.11 56.52 0.40 -5.04 16 22 C -0.30 -6.88 5.40 -104.94 -0.57 -7.44 16 23 C 0.36 8.96 11.53 -22.49 -0.26 8.70 16 24 N -0.55 -14.35 18.53 41.82 0.77 -13.57 16 25 C 0.31 7.10 14.10 -22.40 -0.32 6.79 16 26 N -0.55 -13.06 18.55 41.93 0.78 -12.28 16 27 C -0.13 -1.44 4.77 -29.60 -0.14 -1.58 16 28 C -0.10 -1.04 4.30 -29.60 -0.13 -1.17 16 29 H 0.06 0.45 8.13 -51.93 -0.42 0.02 16 30 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 32 H 0.07 0.62 7.36 -51.93 -0.38 0.24 16 33 H 0.08 0.77 6.63 -51.93 -0.34 0.43 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 1.04 7.87 -51.93 -0.41 0.63 16 37 H 0.06 0.58 6.64 -51.93 -0.34 0.24 16 38 H 0.39 6.52 7.46 -40.82 -0.30 6.22 16 39 H 0.29 6.46 8.29 -40.82 -0.34 6.12 16 40 H 0.06 0.64 7.47 -51.93 -0.39 0.25 16 41 H 0.08 0.92 8.12 -51.93 -0.42 0.50 16 42 H 0.07 0.83 7.32 -51.93 -0.38 0.45 16 43 H 0.07 0.83 7.47 -51.93 -0.39 0.45 16 LS Contribution 359.91 15.07 5.42 5.42 Total: -1.00 -28.08 359.91 -5.74 -33.82 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -5.65 Total: 5.45 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: -1.70 Total: 9.28 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: 1.91 Total: -54.98 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: -0.68 Total: -11.14 kcal Atomic # 14 Polarization: 17.19 SS G_CDS: -5.03 Total: 12.15 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.08 -5.74 -33.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172794557.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.719 kcal (2) G-P(sol) polarization free energy of solvation -28.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds