Wall clock time and date at job start Tue Mar 31 2020 11:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34231 * 116.99859 * 2 1 4 4 O 1.20828 * 120.00273 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00162 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.62557 * 300.38890 * 5 3 2 7 7 C 1.50476 * 109.62665 * 60.96548 * 5 3 2 8 8 C 1.54070 * 112.49821 * 213.85864 * 7 5 3 9 9 C 1.54065 * 112.81967 * 318.28132 * 8 7 5 10 10 C 1.50473 * 112.49313 * 318.28872 * 9 8 7 11 11 H 1.09002 * 109.63446 * 334.24482 * 10 9 8 12 12 N 1.46507 * 109.62762 * 213.85946 * 10 9 8 13 13 C 1.38227 * 119.99749 * 86.62590 * 12 10 9 14 14 C 1.38995 * 120.00126 * 5.27613 * 13 12 10 15 15 H 1.07993 * 120.00054 * 317.75774 * 14 13 12 16 16 C 1.40824 * 119.99444 * 137.75658 * 14 13 12 17 17 N 1.30335 * 120.00235 * 341.40676 * 16 14 13 18 18 Si 1.86798 * 119.99691 * 161.40884 * 16 14 13 19 19 H 1.48500 * 109.47125 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47163 * 119.99942 * 18 16 14 21 21 H 1.48493 * 109.47248 * 239.99790 * 18 16 14 22 22 C 1.41157 * 119.99894 * 185.28464 * 13 12 10 23 23 C 1.43192 * 120.00005 * 174.28800 * 22 13 12 24 24 N 8.83824 * 159.34063 * 65.32487 * 5 1 2 25 25 C 1.43196 * 119.99887 * 354.28660 * 22 13 12 26 26 N 9.14497 * 167.38058 * 323.35440 * 3 1 2 27 27 C 1.54236 * 108.51524 * 94.15674 * 10 9 8 28 28 C 1.45545 * 112.40645 * 279.99587 * 27 10 9 29 29 H 1.08998 * 109.47612 * 60.00028 * 1 2 3 30 30 H 1.09000 * 109.46987 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47358 * 299.99706 * 1 2 3 32 32 H 1.08996 * 108.87796 * 334.63900 * 7 5 3 33 33 H 1.09003 * 108.87400 * 93.17970 * 7 5 3 34 34 H 1.09003 * 108.81102 * 197.42431 * 8 7 5 35 35 H 1.09000 * 108.81632 * 79.14750 * 8 7 5 36 36 H 1.08999 * 108.87858 * 197.51088 * 9 8 7 37 37 H 1.08997 * 108.87280 * 79.06284 * 9 8 7 38 38 H 0.97000 * 119.99839 * 266.62466 * 12 10 9 39 39 H 0.97004 * 120.00119 * 185.07782 * 17 16 14 40 40 H 1.08996 * 108.89834 * 40.75058 * 27 10 9 41 41 H 1.08998 * 108.89468 * 159.34036 * 27 10 9 42 42 H 1.09007 * 108.89626 * 182.69366 * 28 27 10 43 43 H 1.08998 * 108.89577 * 301.28107 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2750 -0.0006 6 1 3.9594 0.7753 0.8848 7 6 4.1065 0.6148 -1.2401 8 6 5.4565 -0.0857 -0.9943 9 6 6.4076 0.7433 -0.1101 10 6 6.3939 2.2058 -0.4636 11 1 6.0997 2.3279 -1.5061 12 7 7.7288 2.7740 -0.2593 13 6 8.6696 2.7091 -1.2699 14 6 8.3172 2.2044 -2.5161 15 1 7.6969 1.3232 -2.5861 16 6 8.7691 2.8424 -3.6874 17 7 9.1953 4.0731 -3.6362 18 14 8.7577 1.9249 -5.3145 19 1 8.2303 0.5525 -5.1051 20 1 7.8920 2.6449 -6.2827 21 1 10.1408 1.8480 -5.8492 22 6 9.9883 3.1551 -1.0362 23 6 10.9933 2.9759 -2.0404 24 7 11.7916 2.8319 -2.8348 25 6 10.3211 3.7868 0.2051 26 7 10.5846 4.2882 1.1925 27 6 5.3804 2.9217 0.4524 28 6 4.0075 2.7528 -0.0004 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 3.3847 -0.1234 -1.5897 33 1 4.2391 1.3715 -2.0134 34 1 5.9385 -0.2671 -1.9550 35 1 5.2720 -1.0444 -0.5095 36 1 7.4216 0.3614 -0.2282 37 1 6.1090 0.6295 0.9320 38 1 7.9523 3.1958 0.5852 39 1 9.4370 4.5370 -4.4531 40 1 5.4712 2.5197 1.4615 41 1 5.6149 3.9859 0.4745 42 1 3.3469 3.3184 0.6568 43 1 3.9189 3.1464 -1.0130 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172794557.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:50 Heat of formation + Delta-G solvation = -60.947605 kcal Electronic energy + Delta-G solvation = -26613.867056 eV Core-core repulsion = 22850.764106 eV Total energy + Delta-G solvation = -3763.102950 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.78530 -40.13744 -38.39253 -37.45384 -36.51535 -36.33644 -35.03273 -33.34054 -32.87907 -30.27716 -28.57196 -28.49545 -26.15432 -25.20247 -22.85571 -22.62333 -21.38134 -20.49641 -19.98182 -18.83948 -18.54319 -17.81760 -17.43683 -17.22889 -16.98505 -16.22210 -15.74672 -15.24738 -15.03187 -14.68385 -14.52571 -14.47317 -14.19805 -14.14220 -14.01213 -13.68198 -13.52342 -13.33655 -13.21450 -13.13687 -12.95083 -12.93709 -12.79390 -12.73945 -12.50897 -12.27163 -11.96158 -11.81572 -11.75961 -11.67326 -11.53139 -11.36464 -11.30171 -11.08904 -10.93654 -10.46602 -8.83121 -8.12923 -6.84129 1.06849 1.20909 1.45365 1.54953 1.61667 1.79794 2.15882 2.18259 2.40053 2.52349 2.85324 3.03815 3.59502 3.65559 3.73143 3.81309 4.05919 4.15733 4.29498 4.35741 4.36648 4.38623 4.42094 4.51252 4.54705 4.75053 4.75570 4.81262 4.97596 5.01934 5.10005 5.15561 5.16732 5.26875 5.30052 5.38665 5.46805 5.50067 5.54464 5.62171 5.69598 5.86642 6.28173 6.58957 6.76907 6.95389 7.17196 7.31747 7.62541 8.15181 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015619 B = 0.003817 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.240467 B = 7333.112900 C = 8427.017725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.360 6.360 3 C 0.468 3.532 4 O -0.539 6.539 5 C -0.071 4.071 6 H 0.131 0.869 7 C -0.112 4.112 8 C -0.104 4.104 9 C -0.134 4.134 10 C 0.151 3.849 11 H 0.088 0.912 12 N -0.724 5.724 13 C 0.449 3.551 14 C -0.481 4.481 15 H 0.121 0.879 16 C 0.069 3.931 17 N -0.770 5.770 18 Si 0.949 3.051 19 H -0.233 1.233 20 H -0.258 1.258 21 H -0.292 1.292 22 C -0.319 4.319 23 C 0.356 3.644 24 N -0.578 5.578 25 C 0.310 3.690 26 N -0.563 5.563 27 C -0.118 4.118 28 C -0.093 4.093 29 H 0.059 0.941 30 H 0.130 0.870 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.387 0.613 39 H 0.292 0.708 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.619 -10.968 3.291 23.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.276 6.276 3 C 0.313 3.687 4 O -0.429 6.429 5 C -0.090 4.090 6 H 0.149 0.851 7 C -0.150 4.150 8 C -0.142 4.142 9 C -0.173 4.173 10 C 0.046 3.954 11 H 0.106 0.894 12 N -0.347 5.347 13 C 0.331 3.669 14 C -0.513 4.513 15 H 0.138 0.862 16 C -0.157 4.157 17 N -0.392 5.392 18 Si 0.771 3.229 19 H -0.155 1.155 20 H -0.183 1.183 21 H -0.218 1.218 22 C -0.339 4.339 23 C 0.049 3.951 24 N -0.262 5.262 25 C 0.006 3.994 26 N -0.248 5.248 27 C -0.156 4.156 28 C -0.131 4.131 29 H 0.078 0.922 30 H 0.148 0.852 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.220 0.780 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -19.297 -10.033 3.467 22.024 hybrid contribution -0.047 0.431 -0.594 0.736 sum -19.344 -9.601 2.873 21.786 Atomic orbital electron populations 1.23523 0.75153 1.05584 1.02359 1.86506 1.24650 1.32857 1.83631 1.24195 0.92730 0.81009 0.70804 1.90650 1.68038 1.37434 1.46793 1.20913 0.85308 0.99220 1.03578 0.85130 1.21347 0.97659 1.00530 0.95417 1.21774 0.93323 0.98561 1.00505 1.21912 1.00198 0.94463 1.00718 1.20793 0.80904 0.92632 1.01029 0.89400 1.45245 1.11469 1.61587 1.16358 1.17001 0.83762 0.80207 0.85920 1.19402 1.29929 1.13449 0.88529 0.86171 1.26521 0.90390 0.94589 1.04170 1.69559 1.26182 1.10915 1.32567 0.85592 0.78237 0.81367 0.77719 1.15499 1.18258 1.21835 1.12746 0.91403 1.39471 0.90313 1.24683 0.90331 0.89372 0.90669 1.80891 1.13682 1.18797 1.12861 1.25614 0.91993 0.89963 0.91877 1.81145 1.09133 1.19848 1.14694 1.20657 0.93766 1.01315 0.99863 1.20242 0.96000 0.93710 1.03143 0.92216 0.85163 0.92075 0.90273 0.91364 0.91619 0.90215 0.92350 0.90705 0.77955 0.89662 0.90193 0.91673 0.90993 0.91701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 113.37 1.20 1.52 16 2 O -0.36 -6.17 10.11 -51.42 -0.52 -6.69 16 3 C 0.47 9.41 7.12 71.24 0.51 9.92 16 4 O -0.54 -14.09 15.35 21.96 0.34 -13.76 16 5 C -0.07 -1.19 2.30 -11.94 -0.03 -1.22 16 6 H 0.13 1.75 7.00 -2.39 -0.02 1.73 16 7 C -0.11 -1.82 4.87 30.14 0.15 -1.67 16 8 C -0.10 -1.73 5.86 31.32 0.18 -1.55 16 9 C -0.13 -2.76 4.88 30.14 0.15 -2.61 16 10 C 0.15 3.74 1.88 44.59 0.08 3.82 16 11 H 0.09 2.40 5.74 -2.39 -0.01 2.39 16 12 N -0.72 -23.53 5.00 -320.04 -1.60 -25.12 16 13 C 0.45 18.13 6.13 39.03 0.24 18.37 16 14 C -0.48 -19.16 7.20 23.08 0.17 -18.99 16 15 H 0.12 4.22 7.26 -2.91 -0.02 4.19 16 16 C 0.07 2.95 4.06 85.55 0.35 3.30 16 17 N -0.77 -35.95 11.16 21.98 0.25 -35.71 16 18 Si 0.95 34.32 29.61 68.60 2.03 36.35 16 19 H -0.23 -7.53 7.11 99.48 0.71 -6.83 16 20 H -0.26 -8.75 7.11 99.48 0.71 -8.04 16 21 H -0.29 -12.00 7.11 99.48 0.71 -11.29 16 22 C -0.32 -14.75 5.40 -20.07 -0.11 -14.86 16 23 C 0.36 18.13 11.53 88.34 1.02 19.15 16 24 N -0.58 -30.68 18.53 19.00 0.35 -30.33 16 25 C 0.31 14.41 14.10 88.30 1.25 15.66 16 26 N -0.56 -26.67 18.55 19.03 0.35 -26.32 16 27 C -0.12 -2.42 4.77 28.74 0.14 -2.29 16 28 C -0.09 -1.81 4.30 28.74 0.12 -1.69 16 29 H 0.06 0.76 8.13 -2.39 -0.02 0.74 16 30 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.75 8.13 -2.39 -0.02 0.73 16 32 H 0.08 1.16 7.36 -2.39 -0.02 1.15 16 33 H 0.07 1.24 6.63 -2.39 -0.02 1.22 16 34 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.06 1.45 7.87 -2.39 -0.02 1.43 16 37 H 0.07 1.27 6.64 -2.39 -0.02 1.26 16 38 H 0.39 12.64 7.46 -92.71 -0.69 11.95 16 39 H 0.29 13.08 8.29 -92.71 -0.77 12.31 16 40 H 0.08 1.39 7.47 -2.39 -0.02 1.37 16 41 H 0.06 1.50 8.12 -2.39 -0.02 1.48 16 42 H 0.07 1.49 7.32 -2.38 -0.02 1.47 16 43 H 0.06 1.39 7.47 -2.39 -0.02 1.37 16 Total: -1.00 -60.10 359.91 6.98 -53.13 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: 0.37 Total: 21.60 kcal Atomic # 6 Polarization: 21.44 SS G_CDS: 5.41 Total: 26.85 kcal Atomic # 7 Polarization: -116.83 SS G_CDS: -0.65 Total: -117.48 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.18 Total: -20.44 kcal Atomic # 14 Polarization: 34.32 SS G_CDS: 2.03 Total: 36.35 kcal Total: -60.10 6.98 -53.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172794557.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.820 kcal (2) G-P(sol) polarization free energy of solvation -60.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds