Wall clock time and date at job start Tue Mar 31 2020 11:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35919 * 116.99865 * 2 1 4 4 C 1.38746 * 120.47119 * 359.97438 * 3 2 1 5 5 N 1.31814 * 120.68018 * 180.02562 * 4 3 2 6 6 C 1.31882 * 121.78112 * 359.97438 * 5 4 3 7 7 C 1.38206 * 120.88517 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.38699 * 179.97438 * 7 6 5 9 9 C 1.52995 * 109.47426 * 270.04651 * 8 7 6 10 10 C 1.50701 * 109.47046 * 179.97438 * 9 8 7 11 11 O 1.21283 * 120.00117 * 0.02562 * 10 9 8 12 12 N 1.34782 * 119.99888 * 179.97438 * 10 9 8 13 13 C 1.46502 * 119.99989 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.47207 * 90.00255 * 13 12 10 15 15 H 1.07999 * 119.99480 * 359.97438 * 14 13 12 16 16 C 1.37868 * 120.00101 * 179.97438 * 14 13 12 17 17 N 1.31520 * 120.00250 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00065 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47501 * 90.00101 * 18 16 14 20 20 H 1.48498 * 109.47211 * 209.99912 * 18 16 14 21 21 H 1.48497 * 109.47252 * 329.99692 * 18 16 14 22 22 C 1.46503 * 119.99856 * 0.02562 * 12 10 9 23 23 C 1.52998 * 109.46875 * 90.00033 * 22 12 10 24 24 C 1.47201 * 109.46806 * 180.02562 * 23 22 12 25 25 N 8.92079 * 119.17411 * 302.38985 * 2 1 3 26 26 C 1.38583 * 119.22768 * 0.02698 * 7 6 5 27 27 H 1.09007 * 109.46745 * 60.00668 * 1 2 3 28 28 H 1.08999 * 109.47164 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47439 * 300.00428 * 1 2 3 30 30 H 1.08004 * 119.66580 * 359.97438 * 4 3 2 31 31 H 1.08000 * 119.55505 * 179.97438 * 6 5 4 32 32 H 1.08994 * 109.47036 * 30.04970 * 8 7 6 33 33 H 1.09005 * 109.47100 * 150.04577 * 8 7 6 34 34 H 1.09005 * 109.47129 * 299.99653 * 9 8 7 35 35 H 1.08998 * 109.47327 * 60.00121 * 9 8 7 36 36 H 1.08993 * 109.47215 * 210.00694 * 13 12 10 37 37 H 1.09005 * 109.46862 * 330.00298 * 13 12 10 38 38 H 0.96997 * 120.00166 * 180.02562 * 17 16 14 39 39 H 1.08997 * 109.46562 * 209.99377 * 22 12 10 40 40 H 1.08997 * 109.47094 * 329.99650 * 22 12 10 41 41 H 1.08997 * 109.46990 * 299.99082 * 23 22 12 42 42 H 1.08997 * 109.47572 * 59.99910 * 23 22 12 43 43 H 1.07991 * 120.81450 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2999 2.3808 -0.0005 5 7 1.8940 3.5575 -0.0010 6 6 3.2079 3.6722 -0.0006 7 6 4.0178 2.5524 0.0010 8 6 5.5179 2.6966 0.0010 9 6 6.0257 2.7446 -1.4415 10 6 7.5257 2.8894 -1.4414 11 8 8.1293 2.9479 -0.3911 12 7 8.1966 2.9528 -2.6086 13 6 9.6548 3.0941 -2.6086 14 6 10.2919 1.7284 -2.6067 15 1 9.6725 0.8437 -2.6052 16 6 11.6653 1.6084 -2.6069 17 7 12.2214 0.4165 -2.6058 18 14 12.7366 3.1387 -2.6088 19 1 13.0209 3.5458 -1.2092 20 1 14.0136 2.8481 -3.3088 21 1 12.0271 4.2388 -3.3099 22 6 7.4676 2.8815 -3.8774 23 6 7.0758 4.2926 -4.3203 24 6 6.3427 4.2209 -5.5948 25 7 5.7776 4.1725 -6.5773 26 6 3.4344 1.2953 0.0016 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 0.2212 2.3269 -0.0014 31 1 3.6568 4.6545 -0.0014 32 1 5.7944 3.6174 0.5143 33 1 5.9647 1.8457 0.5153 34 1 5.7492 1.8236 -1.9548 35 1 5.5789 3.5954 -1.9558 36 1 9.9670 3.6395 -3.4992 37 1 9.9667 3.6418 -1.7193 38 1 13.1877 0.3321 -2.6055 39 1 8.1033 2.4258 -4.6365 40 1 6.5688 2.2790 -3.7466 41 1 6.4401 4.7483 -3.5612 42 1 7.9746 4.8951 -4.4511 43 1 4.0428 0.4031 0.0032 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175789491.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:25 Heat of formation + Delta-G solvation = -14.632123 kcal Electronic energy + Delta-G solvation = -25479.325704 eV Core-core repulsion = 21718.231144 eV Total energy + Delta-G solvation = -3761.094560 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.92318 -39.49614 -38.44274 -36.97112 -35.45671 -34.56969 -32.83308 -31.65950 -31.03903 -30.04658 -28.11972 -27.69497 -25.04968 -24.04013 -23.72931 -22.37893 -21.20922 -18.52912 -18.12999 -17.75698 -17.32228 -16.90430 -16.86137 -16.55289 -16.19432 -15.70017 -15.18422 -14.73031 -14.52229 -14.22783 -13.95777 -13.87912 -13.72596 -13.28208 -13.18258 -12.84073 -12.67786 -12.50690 -12.42268 -12.28166 -12.20497 -11.95230 -11.84521 -11.77278 -11.57758 -11.19355 -11.06574 -10.79670 -10.58274 -10.23585 -9.70679 -9.64346 -9.60799 -9.13647 -8.67089 -8.64137 -7.94002 -6.13634 -4.13413 0.86068 1.07324 2.67684 2.76495 2.83903 3.18817 3.25109 3.30388 3.32974 3.47084 3.60098 4.08988 4.24684 4.34506 4.38931 4.58043 4.70227 4.75312 4.81912 4.89116 4.92728 4.96035 5.05189 5.08667 5.12559 5.18298 5.27052 5.33313 5.43872 5.56978 5.71147 5.74864 5.79741 6.01336 6.11133 6.19114 6.30124 6.57405 6.84647 6.90406 7.16630 7.51618 7.54061 7.72221 8.05430 8.39788 8.79676 8.90426 9.45873 10.99637 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013393 B = 0.003043 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.107592 B = 9200.721107 C =10187.142575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.312 6.312 3 C 0.078 3.922 4 C 0.007 3.993 5 N -0.449 5.449 6 C 0.063 3.937 7 C -0.085 4.085 8 C -0.064 4.064 9 C -0.138 4.138 10 C 0.510 3.490 11 O -0.532 6.532 12 N -0.593 5.593 13 C 0.214 3.786 14 C -0.531 4.531 15 H 0.075 0.925 16 C 0.073 3.927 17 N -0.896 5.896 18 Si 0.875 3.125 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.265 1.265 22 C 0.117 3.883 23 C -0.051 4.051 24 C 0.216 3.784 25 N -0.442 5.442 26 C -0.106 4.106 27 H 0.057 0.943 28 H 0.103 0.897 29 H 0.057 0.943 30 H 0.155 0.845 31 H 0.159 0.841 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.032 0.968 37 H 0.040 0.960 38 H 0.265 0.735 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.108 0.892 42 H 0.115 0.885 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.950 4.743 3.560 21.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.224 6.224 3 C 0.031 3.969 4 C -0.151 4.151 5 N -0.158 5.158 6 C -0.094 4.094 7 C -0.087 4.087 8 C -0.102 4.102 9 C -0.178 4.178 10 C 0.297 3.703 11 O -0.408 6.408 12 N -0.324 5.324 13 C 0.094 3.906 14 C -0.570 4.570 15 H 0.093 0.907 16 C -0.130 4.130 17 N -0.534 5.534 18 Si 0.702 3.298 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.190 1.190 22 C -0.009 4.009 23 C -0.092 4.092 24 C -0.102 4.102 25 N -0.120 5.120 26 C -0.133 4.133 27 H 0.076 0.924 28 H 0.121 0.879 29 H 0.076 0.924 30 H 0.172 0.828 31 H 0.176 0.824 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.050 0.950 37 H 0.058 0.942 38 H 0.075 0.925 39 H 0.114 0.886 40 H 0.098 0.902 41 H 0.126 0.874 42 H 0.133 0.867 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -21.712 5.144 2.655 22.471 hybrid contribution 1.128 -0.070 0.239 1.156 sum -20.584 5.074 2.894 21.397 Atomic orbital electron populations 1.23115 0.78055 1.04360 1.01520 1.86103 1.21592 1.26136 1.88531 1.20088 0.93185 0.85691 0.97936 1.22848 1.00389 0.87331 1.04488 1.67530 1.12217 1.26410 1.09612 1.22625 0.88499 0.98841 0.99480 1.20867 0.97666 0.92738 0.97405 1.20334 0.88040 1.05325 0.96496 1.21740 0.93788 1.04188 0.98059 1.20343 0.88998 0.77026 0.83941 1.90699 1.70049 1.49333 1.30742 1.47892 1.08910 1.71619 1.03969 1.19725 0.74950 0.98348 0.97605 1.21302 0.92070 0.91945 1.51674 0.90676 1.24861 0.97834 0.95885 0.94400 1.69892 1.10983 1.22333 1.50206 0.86868 0.80379 0.83641 0.78876 1.19893 1.21139 1.18976 1.21334 0.98049 0.93285 0.88268 1.19896 0.99968 1.01808 0.87571 1.28996 0.93403 0.93249 0.94593 1.81155 1.10354 1.08482 1.11969 1.20925 0.91539 0.98831 1.01955 0.92410 0.87905 0.92437 0.82807 0.82376 0.89295 0.89360 0.88935 0.89201 0.95032 0.94233 0.92501 0.88570 0.90218 0.87442 0.86680 0.83755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.82 101.05 0.99 1.13 16 2 O -0.31 -3.01 10.51 -19.48 -0.20 -3.21 16 3 C 0.08 0.82 6.71 -39.08 -0.26 0.56 16 4 C 0.01 0.07 10.22 -17.37 -0.18 -0.10 16 5 N -0.45 -5.12 10.36 -13.12 -0.14 -5.26 16 6 C 0.06 0.66 10.85 -17.54 -0.19 0.47 16 7 C -0.08 -0.88 5.15 -104.51 -0.54 -1.42 16 8 C -0.06 -0.70 4.66 -27.88 -0.13 -0.83 16 9 C -0.14 -1.56 4.23 -27.89 -0.12 -1.68 16 10 C 0.51 8.50 7.67 -10.98 -0.08 8.42 16 11 O -0.53 -11.27 15.56 5.55 0.09 -11.18 16 12 N -0.59 -10.01 2.46 -175.06 -0.43 -10.44 16 13 C 0.21 4.60 4.23 -5.19 -0.02 4.57 16 14 C -0.53 -14.17 9.94 -34.44 -0.34 -14.51 16 15 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 16 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 17 N -0.90 -26.67 13.96 55.43 0.77 -25.89 16 18 Si 0.88 20.40 27.47 -169.99 -4.67 15.73 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.27 -5.67 6.54 56.52 0.37 -5.30 16 22 C 0.12 1.44 5.17 -4.04 -0.02 1.42 16 23 C -0.05 -0.48 6.03 -29.52 -0.18 -0.65 16 24 C 0.22 2.47 15.43 -20.81 -0.32 2.15 16 25 N -0.44 -6.33 18.53 42.10 0.78 -5.55 16 26 C -0.11 -1.13 9.81 -39.14 -0.38 -1.52 16 27 H 0.06 0.26 7.68 -51.92 -0.40 -0.14 16 28 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.25 7.68 -51.93 -0.40 -0.15 16 30 H 0.15 1.14 6.32 -52.48 -0.33 0.81 16 31 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.09 0.97 8.05 -51.93 -0.42 0.55 16 33 H 0.09 1.09 8.05 -51.93 -0.42 0.68 16 34 H 0.09 0.98 7.40 -51.93 -0.38 0.59 16 35 H 0.09 0.77 7.19 -51.93 -0.37 0.40 16 36 H 0.03 0.63 7.13 -51.93 -0.37 0.26 16 37 H 0.04 0.92 6.85 -51.93 -0.36 0.56 16 38 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.10 1.30 8.07 -51.93 -0.42 0.88 16 40 H 0.08 0.83 6.44 -51.93 -0.33 0.50 16 41 H 0.11 0.77 7.22 -51.93 -0.38 0.39 16 42 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 371.83 15.07 5.60 5.60 Total: -1.00 -35.28 371.83 -5.93 -41.21 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -5.86 Total: -0.92 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -1.87 Total: -0.08 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: 0.99 Total: -47.15 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.12 Total: -14.39 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.67 Total: 15.73 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.28 -5.93 -41.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175789491.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.575 kcal (2) G-P(sol) polarization free energy of solvation -35.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds