Wall clock time and date at job start Tue Mar 31 2020 11:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35919 * 116.99865 * 2 1 4 4 C 1.38746 * 120.47119 * 359.97438 * 3 2 1 5 5 N 1.31814 * 120.68018 * 180.02562 * 4 3 2 6 6 C 1.31882 * 121.78112 * 359.97438 * 5 4 3 7 7 C 1.38206 * 120.88517 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.38699 * 179.97438 * 7 6 5 9 9 C 1.52995 * 109.47426 * 270.04651 * 8 7 6 10 10 C 1.50701 * 109.47046 * 179.97438 * 9 8 7 11 11 O 1.21283 * 120.00117 * 0.02562 * 10 9 8 12 12 N 1.34782 * 119.99888 * 179.97438 * 10 9 8 13 13 C 1.46502 * 119.99989 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.47207 * 90.00255 * 13 12 10 15 15 H 1.07999 * 119.99480 * 359.97438 * 14 13 12 16 16 C 1.37868 * 120.00101 * 179.97438 * 14 13 12 17 17 N 1.31520 * 120.00250 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00065 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47501 * 90.00101 * 18 16 14 20 20 H 1.48498 * 109.47211 * 209.99912 * 18 16 14 21 21 H 1.48497 * 109.47252 * 329.99692 * 18 16 14 22 22 C 1.46503 * 119.99856 * 0.02562 * 12 10 9 23 23 C 1.52998 * 109.46875 * 90.00033 * 22 12 10 24 24 C 1.47201 * 109.46806 * 180.02562 * 23 22 12 25 25 N 8.92079 * 119.17411 * 302.38985 * 2 1 3 26 26 C 1.38583 * 119.22768 * 0.02698 * 7 6 5 27 27 H 1.09007 * 109.46745 * 60.00668 * 1 2 3 28 28 H 1.08999 * 109.47164 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47439 * 300.00428 * 1 2 3 30 30 H 1.08004 * 119.66580 * 359.97438 * 4 3 2 31 31 H 1.08000 * 119.55505 * 179.97438 * 6 5 4 32 32 H 1.08994 * 109.47036 * 30.04970 * 8 7 6 33 33 H 1.09005 * 109.47100 * 150.04577 * 8 7 6 34 34 H 1.09005 * 109.47129 * 299.99653 * 9 8 7 35 35 H 1.08998 * 109.47327 * 60.00121 * 9 8 7 36 36 H 1.08993 * 109.47215 * 210.00694 * 13 12 10 37 37 H 1.09005 * 109.46862 * 330.00298 * 13 12 10 38 38 H 0.96997 * 120.00166 * 180.02562 * 17 16 14 39 39 H 1.08997 * 109.46562 * 209.99377 * 22 12 10 40 40 H 1.08997 * 109.47094 * 329.99650 * 22 12 10 41 41 H 1.08997 * 109.46990 * 299.99082 * 23 22 12 42 42 H 1.08997 * 109.47572 * 59.99910 * 23 22 12 43 43 H 1.07991 * 120.81450 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2999 2.3808 -0.0005 5 7 1.8940 3.5575 -0.0010 6 6 3.2079 3.6722 -0.0006 7 6 4.0178 2.5524 0.0010 8 6 5.5179 2.6966 0.0010 9 6 6.0257 2.7446 -1.4415 10 6 7.5257 2.8894 -1.4414 11 8 8.1293 2.9479 -0.3911 12 7 8.1966 2.9528 -2.6086 13 6 9.6548 3.0941 -2.6086 14 6 10.2919 1.7284 -2.6067 15 1 9.6725 0.8437 -2.6052 16 6 11.6653 1.6084 -2.6069 17 7 12.2214 0.4165 -2.6058 18 14 12.7366 3.1387 -2.6088 19 1 13.0209 3.5458 -1.2092 20 1 14.0136 2.8481 -3.3088 21 1 12.0271 4.2388 -3.3099 22 6 7.4676 2.8815 -3.8774 23 6 7.0758 4.2926 -4.3203 24 6 6.3427 4.2209 -5.5948 25 7 5.7776 4.1725 -6.5773 26 6 3.4344 1.2953 0.0016 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 0.2212 2.3269 -0.0014 31 1 3.6568 4.6545 -0.0014 32 1 5.7944 3.6174 0.5143 33 1 5.9647 1.8457 0.5153 34 1 5.7492 1.8236 -1.9548 35 1 5.5789 3.5954 -1.9558 36 1 9.9670 3.6395 -3.4992 37 1 9.9667 3.6418 -1.7193 38 1 13.1877 0.3321 -2.6055 39 1 8.1033 2.4258 -4.6365 40 1 6.5688 2.2790 -3.7466 41 1 6.4401 4.7483 -3.5612 42 1 7.9746 4.8951 -4.4511 43 1 4.0428 0.4031 0.0032 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175789491.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:24 Heat of formation + Delta-G solvation = -38.314548 kcal Electronic energy + Delta-G solvation = -25480.352651 eV Core-core repulsion = 21718.231144 eV Total energy + Delta-G solvation = -3762.121507 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.67547 -40.76995 -39.15541 -38.00603 -36.74154 -35.52212 -34.74026 -32.56082 -32.22013 -30.99379 -29.54832 -28.34151 -26.11778 -25.19175 -24.53378 -23.81349 -22.14938 -19.80103 -19.14433 -18.85597 -18.44235 -18.06335 -17.79147 -17.55346 -17.09437 -16.77641 -16.36428 -15.94205 -15.68205 -15.20465 -15.05845 -14.75307 -14.59761 -14.49866 -14.17456 -14.04675 -13.91038 -13.71409 -13.52699 -13.43125 -13.02753 -12.96013 -12.93538 -12.71031 -12.57955 -12.39275 -12.35488 -12.08392 -11.93687 -11.71907 -11.66573 -10.75557 -10.67685 -10.42435 -10.34574 -9.41502 -9.40294 -8.26100 -6.30594 0.09300 0.29470 1.40492 1.44415 1.51767 1.72305 1.88326 1.91152 2.23268 2.33873 2.38424 2.78223 3.08925 3.17518 3.52812 3.65768 3.74627 3.97453 4.02010 4.05536 4.12219 4.15468 4.19799 4.35367 4.39431 4.46909 4.50577 4.64192 4.70509 4.76198 4.85280 4.90948 4.97898 4.98843 5.08766 5.14702 5.25145 5.36528 5.55241 5.56151 5.67733 6.25276 6.31400 6.63811 6.72487 6.75182 6.96305 7.30256 7.50418 8.90905 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013393 B = 0.003043 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.107592 B = 9200.721107 C =10187.142575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.330 6.330 3 C 0.073 3.927 4 C 0.006 3.994 5 N -0.468 5.468 6 C 0.061 3.939 7 C -0.082 4.082 8 C -0.057 4.057 9 C -0.125 4.125 10 C 0.505 3.495 11 O -0.585 6.585 12 N -0.596 5.596 13 C 0.221 3.779 14 C -0.532 4.532 15 H 0.029 0.971 16 C 0.007 3.993 17 N -0.951 5.951 18 Si 0.945 3.055 19 H -0.278 1.278 20 H -0.286 1.286 21 H -0.226 1.226 22 C 0.112 3.888 23 C -0.038 4.038 24 C 0.245 3.755 25 N -0.493 5.493 26 C -0.121 4.121 27 H 0.068 0.932 28 H 0.120 0.880 29 H 0.069 0.931 30 H 0.178 0.822 31 H 0.179 0.821 32 H 0.091 0.909 33 H 0.066 0.934 34 H 0.103 0.897 35 H 0.130 0.870 36 H 0.059 0.941 37 H 0.027 0.973 38 H 0.265 0.735 39 H 0.081 0.919 40 H 0.102 0.898 41 H 0.142 0.858 42 H 0.129 0.871 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.776 7.211 3.058 24.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.243 6.243 3 C 0.026 3.974 4 C -0.151 4.151 5 N -0.177 5.177 6 C -0.097 4.097 7 C -0.084 4.084 8 C -0.095 4.095 9 C -0.165 4.165 10 C 0.294 3.706 11 O -0.465 6.465 12 N -0.326 5.326 13 C 0.099 3.901 14 C -0.571 4.571 15 H 0.047 0.953 16 C -0.191 4.191 17 N -0.592 5.592 18 Si 0.768 3.232 19 H -0.203 1.203 20 H -0.211 1.211 21 H -0.148 1.148 22 C -0.013 4.013 23 C -0.079 4.079 24 C -0.073 4.073 25 N -0.171 5.171 26 C -0.147 4.147 27 H 0.087 0.913 28 H 0.138 0.862 29 H 0.087 0.913 30 H 0.194 0.806 31 H 0.196 0.804 32 H 0.110 0.890 33 H 0.085 0.915 34 H 0.122 0.878 35 H 0.148 0.852 36 H 0.077 0.923 37 H 0.045 0.955 38 H 0.074 0.926 39 H 0.099 0.901 40 H 0.120 0.880 41 H 0.159 0.841 42 H 0.147 0.853 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -23.601 7.622 2.113 24.891 hybrid contribution 1.592 -0.996 0.447 1.931 sum -22.009 6.626 2.560 23.127 Atomic orbital electron populations 1.23420 0.75982 1.05946 1.02608 1.86085 1.23816 1.25934 1.88415 1.20162 0.93164 0.86251 0.97862 1.23211 1.01520 0.86837 1.03571 1.67591 1.12697 1.26989 1.10380 1.22936 0.88297 0.99589 0.98849 1.20693 0.96904 0.92779 0.97987 1.20207 0.88506 1.04572 0.96221 1.21743 0.89506 1.06366 0.98856 1.21255 0.91054 0.75373 0.82890 1.90675 1.71600 1.51607 1.32605 1.47866 1.07400 1.71471 1.05893 1.19406 0.77749 0.95020 0.97970 1.21646 0.91970 0.93155 1.50310 0.95310 1.25875 0.99666 0.99354 0.94168 1.70069 1.11330 1.25246 1.52539 0.85763 0.78315 0.80262 0.78909 1.20346 1.21144 1.14847 1.21517 0.98124 0.95791 0.85857 1.19888 1.00994 0.99823 0.87183 1.29188 0.92152 0.91711 0.94202 1.81201 1.12307 1.10023 1.13613 1.21078 0.92143 0.99094 1.02411 0.91318 0.86224 0.91277 0.80562 0.80371 0.89045 0.91496 0.87836 0.85234 0.92326 0.95505 0.92587 0.90062 0.88013 0.84051 0.85319 0.83963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.82 113.37 1.11 1.24 16 2 O -0.33 -5.97 10.51 -92.64 -0.97 -6.94 16 3 C 0.07 1.43 6.71 22.60 0.15 1.58 16 4 C 0.01 0.11 10.22 84.82 0.87 0.98 16 5 N -0.47 -9.62 10.36 -195.44 -2.02 -11.64 16 6 C 0.06 1.11 10.85 84.68 0.92 2.03 16 7 C -0.08 -1.56 5.15 -19.79 -0.10 -1.66 16 8 C -0.06 -1.18 4.66 29.85 0.14 -1.05 16 9 C -0.13 -2.53 4.23 29.85 0.13 -2.41 16 10 C 0.50 16.22 7.67 87.66 0.67 16.90 16 11 O -0.58 -24.94 15.56 -3.04 -0.05 -24.99 16 12 N -0.60 -19.17 2.46 -826.14 -2.03 -21.20 16 13 C 0.22 9.22 4.23 85.63 0.36 9.58 16 14 C -0.53 -28.99 9.94 25.60 0.25 -28.74 16 15 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 16 C 0.01 0.38 5.47 84.65 0.46 0.84 16 17 N -0.95 -58.72 13.96 21.44 0.30 -58.42 16 18 Si 0.94 41.78 27.47 68.60 1.88 43.67 16 19 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 20 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 21 H -0.23 -8.49 6.54 99.48 0.65 -7.84 16 22 C 0.11 2.47 5.17 86.38 0.45 2.91 16 23 C -0.04 -0.55 6.03 28.79 0.17 -0.38 16 24 C 0.24 4.84 15.43 89.46 1.38 6.22 16 25 N -0.49 -13.14 18.53 19.99 0.37 -12.77 16 26 C -0.12 -2.48 9.81 22.56 0.22 -2.26 16 27 H 0.07 0.47 7.68 -2.38 -0.02 0.45 16 28 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.07 0.46 7.68 -2.39 -0.02 0.44 16 30 H 0.18 2.18 6.32 -2.91 -0.02 2.16 16 31 H 0.18 2.39 8.06 -2.91 -0.02 2.36 16 32 H 0.09 1.87 8.05 -2.39 -0.02 1.85 16 33 H 0.07 1.69 8.05 -2.38 -0.02 1.67 16 34 H 0.10 1.93 7.40 -2.38 -0.02 1.91 16 35 H 0.13 1.62 7.19 -2.39 -0.02 1.60 16 36 H 0.06 2.15 7.13 -2.39 -0.02 2.14 16 37 H 0.03 1.21 6.85 -2.38 -0.02 1.19 16 38 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 39 H 0.08 2.07 8.07 -2.39 -0.02 2.05 16 40 H 0.10 1.81 6.44 -2.39 -0.02 1.79 16 41 H 0.14 1.21 7.22 -2.39 -0.02 1.19 16 42 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.14 2.86 8.06 -2.92 -0.02 2.84 16 Total: -1.00 -81.27 371.83 5.64 -75.63 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 0.97 Total: 10.85 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: 7.19 Total: 5.80 kcal Atomic # 7 Polarization: -100.64 SS G_CDS: -3.38 Total: -104.02 kcal Atomic # 8 Polarization: -30.91 SS G_CDS: -1.02 Total: -31.93 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 1.88 Total: 43.67 kcal Total: -81.27 5.64 -75.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175789491.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.317 kcal (2) G-P(sol) polarization free energy of solvation -81.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds