Wall clock time and date at job start Tue Mar 31 2020 11:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35642 * 116.99583 * 2 1 4 4 C 1.46388 * 126.59381 * 270.24609 * 3 2 1 5 5 C 1.39844 * 133.59248 * 359.33444 * 4 3 2 6 6 C 1.36539 * 119.79387 * 180.41531 * 5 4 3 7 7 C 1.38894 * 120.53238 * 0.26207 * 6 5 4 8 8 C 1.37674 * 120.69768 * 359.97438 * 7 6 5 9 9 C 1.39293 * 119.82514 * 0.02562 * 8 7 6 10 10 N 1.37496 * 133.00319 * 179.97438 * 9 8 7 11 11 H 0.97000 * 125.11498 * 0.07790 * 10 9 8 12 12 C 1.36685 * 126.59539 * 90.03159 * 3 2 1 13 13 C 1.46309 * 125.41538 * 359.95909 * 12 3 2 14 14 O 1.21741 * 120.00305 * 359.97438 * 13 12 3 15 15 N 1.34777 * 119.99913 * 179.97438 * 13 12 3 16 16 C 1.46499 * 120.00108 * 180.02562 * 15 13 12 17 17 C 1.52995 * 109.47116 * 179.97438 * 16 15 13 18 18 C 1.53002 * 109.46998 * 179.97438 * 17 16 15 19 19 N 1.46500 * 109.47041 * 179.97438 * 18 17 16 20 20 C 1.36936 * 119.99734 * 179.97438 * 19 18 17 21 21 H 1.07998 * 120.00187 * 0.02562 * 20 19 18 22 22 C 1.38818 * 120.00010 * 180.02562 * 20 19 18 23 23 N 1.31619 * 119.99900 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00301 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46942 * 89.99604 * 24 22 20 26 26 H 1.48498 * 109.46903 * 209.99899 * 24 22 20 27 27 H 1.48501 * 109.46730 * 329.99639 * 24 22 20 28 28 H 1.08992 * 109.47390 * 59.99995 * 1 2 3 29 29 H 1.09004 * 109.47011 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46937 * 299.99369 * 1 2 3 31 31 H 1.08002 * 120.10671 * 0.70209 * 5 4 3 32 32 H 1.07996 * 119.72764 * 180.23484 * 6 5 4 33 33 H 1.08001 * 119.65102 * 179.97438 * 7 6 5 34 34 H 1.08003 * 120.09133 * 179.97438 * 8 7 6 35 35 H 0.96997 * 119.99880 * 359.97438 * 15 13 12 36 36 H 1.09000 * 109.46785 * 300.00154 * 16 15 13 37 37 H 1.09000 * 109.46950 * 59.99246 * 16 15 13 38 38 H 1.08996 * 109.47113 * 299.99701 * 17 16 15 39 39 H 1.08996 * 109.47244 * 60.00015 * 17 16 15 40 40 H 1.08996 * 109.47128 * 299.99917 * 18 17 16 41 41 H 1.08999 * 109.47421 * 60.00031 * 18 17 16 42 42 H 0.96995 * 120.00064 * 0.02562 * 19 18 17 43 43 H 0.97000 * 120.00265 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2086 0.0000 4 6 2.4364 1.9885 -1.1753 5 6 2.3334 1.7735 -2.5533 6 6 2.8119 2.7104 -3.4237 7 6 3.4055 3.8740 -2.9518 8 6 3.5223 4.1050 -1.5996 9 6 3.0417 3.1639 -0.6920 10 7 3.0157 3.1141 0.6818 11 1 3.3646 3.8005 1.2717 12 6 2.4151 1.9344 1.0974 13 6 2.2100 1.5318 2.4890 14 8 1.6685 0.4713 2.7424 15 7 2.6205 2.3351 3.4904 16 6 2.4155 1.9317 4.8838 17 6 2.9686 3.0130 5.8143 18 6 2.7540 2.5920 7.2695 19 7 3.2841 3.6271 8.1605 20 6 3.2032 3.4687 9.5183 21 1 2.7490 2.5806 9.9322 22 6 3.7050 4.4497 10.3626 23 7 4.2590 5.5318 9.8581 24 14 3.5953 4.2334 12.2148 25 1 4.8129 3.5388 12.7049 26 1 3.4902 5.5652 12.8632 27 1 2.3956 3.4243 12.5484 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8727 0.8714 -2.9279 32 1 2.7284 2.5450 -4.4877 33 1 3.7795 4.6053 -3.6530 34 1 3.9861 5.0130 -1.2434 35 1 3.0522 3.1798 3.2885 36 1 1.3497 1.8009 5.0711 37 1 2.9351 0.9918 5.0701 38 1 4.0344 3.1433 5.6268 39 1 2.4493 3.9530 5.6280 40 1 1.6881 2.4620 7.4567 41 1 3.2730 1.6519 7.4561 42 1 3.6917 4.4248 7.7887 43 1 4.6100 6.2171 10.4480 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177151129.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:30 Heat of formation + Delta-G solvation = -5.361988 kcal Electronic energy + Delta-G solvation = -24994.833847 eV Core-core repulsion = 21234.141270 eV Total energy + Delta-G solvation = -3760.692577 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.81413 -39.55153 -38.21818 -37.02191 -36.10475 -34.43641 -32.10923 -31.93332 -30.27491 -29.42909 -29.11025 -27.02468 -25.67392 -23.96927 -22.55570 -22.46253 -21.42082 -21.21337 -20.23382 -18.78030 -17.57690 -17.09351 -16.83503 -16.42372 -16.12306 -15.69946 -15.51553 -15.11266 -14.80923 -14.57211 -14.56189 -14.27789 -14.07092 -13.99098 -13.39052 -13.30580 -13.05187 -12.54844 -12.22456 -12.03624 -11.92152 -11.73129 -11.41914 -11.04666 -10.97290 -10.84673 -10.68637 -10.40145 -10.12418 -10.00985 -9.97957 -9.74537 -9.26094 -8.91836 -8.66961 -8.05996 -6.97906 -5.81080 -3.10184 0.37417 1.18895 1.59050 2.42432 2.88596 2.98779 3.41646 3.42444 3.46787 3.48485 3.66863 4.23659 4.40115 4.55374 4.65720 4.79434 4.88054 4.99877 5.07331 5.10816 5.14453 5.21911 5.23352 5.31416 5.50286 5.52894 5.53538 5.62442 5.85518 5.88412 5.97516 6.02724 6.09457 6.11705 6.21682 6.25311 6.28431 6.61731 6.72424 6.76731 6.91932 7.25820 7.34445 7.66807 7.93202 8.37805 9.49024 10.05440 10.40040 11.41905 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023831 B = 0.002059 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.667422 B =13598.530300 C =14680.380190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.297 6.297 3 C 0.101 3.899 4 C -0.137 4.137 5 C -0.052 4.052 6 C -0.152 4.152 7 C -0.083 4.083 8 C -0.136 4.136 9 C 0.131 3.869 10 N -0.578 5.578 11 H 0.421 0.579 12 C 0.005 3.995 13 C 0.578 3.422 14 O -0.510 6.510 15 N -0.724 5.724 16 C 0.123 3.877 17 C -0.138 4.138 18 C 0.156 3.844 19 N -0.734 5.734 20 C -0.241 4.241 21 H 0.072 0.928 22 C -0.015 4.015 23 N -0.935 5.935 24 Si 0.909 3.091 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.281 1.281 28 H 0.043 0.957 29 H 0.095 0.905 30 H 0.049 0.951 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.395 0.605 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.023 0.977 41 H 0.023 0.977 42 H 0.383 0.617 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.200 -4.044 -29.577 30.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.211 6.211 3 C 0.047 3.953 4 C -0.142 4.142 5 C -0.071 4.071 6 C -0.171 4.171 7 C -0.102 4.102 8 C -0.157 4.157 9 C 0.022 3.978 10 N -0.187 5.187 11 H 0.260 0.740 12 C -0.104 4.104 13 C 0.364 3.636 14 O -0.385 6.385 15 N -0.375 5.375 16 C 0.000 4.000 17 C -0.176 4.176 18 C 0.028 3.972 19 N -0.378 5.378 20 C -0.372 4.372 21 H 0.090 0.910 22 C -0.211 4.211 23 N -0.583 5.583 24 Si 0.740 3.260 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.207 1.207 28 H 0.061 0.939 29 H 0.114 0.886 30 H 0.068 0.932 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.147 0.853 34 H 0.145 0.855 35 H 0.229 0.771 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.040 0.960 41 H 0.041 0.959 42 H 0.217 0.783 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.554 -5.047 -29.029 29.815 hybrid contribution 0.443 1.231 1.159 1.748 sum -4.111 -3.816 -27.870 28.429 Atomic orbital electron populations 1.23005 0.78657 1.03355 1.00470 1.85976 1.19960 1.21760 1.93374 1.18619 1.00443 0.87301 0.88956 1.19367 1.06251 0.94985 0.93568 1.20352 0.97430 0.98902 0.90383 1.20679 1.01879 0.94825 0.99721 1.20918 0.97777 0.97285 0.94233 1.20134 1.04653 0.98816 0.92051 1.18134 1.00507 0.96411 0.82776 1.41768 1.53553 1.18054 1.05276 0.73995 1.20441 1.06999 0.89070 0.93884 1.16939 0.79516 0.84434 0.82757 1.90909 1.42190 1.22119 1.83274 1.45977 1.61628 1.22928 1.06998 1.21436 1.01784 0.98714 0.78072 1.21957 1.01514 0.98012 0.96158 1.20516 0.96878 0.92839 0.86939 1.42329 1.71728 1.21154 1.02595 1.19248 1.32371 1.03087 0.82458 0.91046 1.24765 1.01352 0.96801 0.98181 1.69657 1.45172 1.09595 1.33919 0.86153 0.77726 0.76774 0.85335 1.21656 1.21738 1.20688 0.93857 0.88644 0.93209 0.85646 0.85649 0.85333 0.85531 0.77129 0.90919 0.90864 0.91249 0.91283 0.95963 0.95939 0.78329 0.93488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 11.13 101.05 1.12 1.52 16 2 O -0.30 -3.92 9.74 -30.73 -0.30 -4.22 16 3 C 0.10 1.27 6.47 -36.87 -0.24 1.04 16 4 C -0.14 -1.48 6.35 -105.06 -0.67 -2.15 16 5 C -0.05 -0.46 10.06 -39.59 -0.40 -0.86 16 6 C -0.15 -1.07 9.97 -39.95 -0.40 -1.46 16 7 C -0.08 -0.54 10.01 -39.54 -0.40 -0.94 16 8 C -0.14 -1.00 10.08 -39.40 -0.40 -1.40 16 9 C 0.13 1.24 7.25 -83.97 -0.61 0.63 16 10 N -0.58 -5.14 6.04 -7.25 -0.04 -5.18 16 11 H 0.42 2.49 8.08 -40.82 -0.33 2.16 16 12 C 0.01 0.06 6.98 -82.05 -0.57 -0.51 16 13 C 0.58 7.76 7.77 -13.02 -0.10 7.66 16 14 O -0.51 -8.55 16.19 -6.95 -0.11 -8.66 16 15 N -0.72 -8.23 5.55 -61.73 -0.34 -8.57 16 16 C 0.12 1.62 5.67 -4.04 -0.02 1.59 16 17 C -0.14 -2.03 5.44 -26.73 -0.15 -2.17 16 18 C 0.16 3.06 6.26 -4.04 -0.03 3.03 16 19 N -0.73 -18.45 5.60 -59.91 -0.34 -18.79 16 20 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 21 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 22 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 23 N -0.93 -28.14 13.06 55.49 0.72 -27.41 16 24 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 28 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 32 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 33 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 34 H 0.13 0.66 8.06 -52.48 -0.42 0.23 16 35 H 0.40 3.38 7.49 -40.82 -0.31 3.07 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.38 10.00 7.67 -40.82 -0.31 9.68 16 43 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 370.86 15.07 5.59 5.59 Total: -1.00 -34.96 370.86 -8.93 -43.89 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -5.99 Total: 7.44 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -3.09 Total: -1.46 kcal Atomic # 7 Polarization: -59.96 SS G_CDS: 0.00 Total: -59.95 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: -0.41 Total: -12.88 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.96 -8.93 -43.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177151129.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.529 kcal (2) G-P(sol) polarization free energy of solvation -34.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds